Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02415 and BPUM_1346
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:53
# Commandline: needle
# -asequence dna-align/BSNT_02415___ykqA.1.24716.seq
# -bsequence dna-align/BPUM_1346.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02415___ykqA-BPUM_1346.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02415___ykqA-BPUM_1346.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02415___ykqA
# 2: BPUM_1346
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity: 534/933 (57.2%)
# Similarity: 534/933 (57.2%)
# Gaps: 195/933 (20.9%)
# Score: 1277.5
#
#
#=======================================
BSNT_02415___ 1 ------GTGAACTCGCTTCTGTTTGTATACGGGACATTAAGAAAGCATGA 44
||.|| |.||.|.||||||||.||.||..||....|||||||
BPUM_1346 1 ATGACGGTAAA---GGTTTTATTTGTATATGGAACGCTATTGCAGCATGA 47
BSNT_02415___ 45 AAA--------AAAC---CAT--------------CATTTGCTGGCACAA 69
||| |||| ||| .|||.||| .||
BPUM_1346 48 AAAGCACCACGAAACGTACATGAAGGAAAGCAGGCTATTAGCT----AAA 93
BSNT_02415___ 70 TCGGCATGTATCAATGAGCAGGCGAGAACAAAGGGAAGTTTGTTTGCTGC 119
||.||.||.||.|.| |||||..|.|.||
BPUM_1346 94 TCTGCTTGGATGAGT------------------GGAAGGATTTATG---- 121
BSNT_02415___ 120 AAAAGAGGTGCCCA--------CAGC-TGTTTTCAATGATGAAGATGAAG 160
|.|.|||| || |||| |||.||| .||.|||..|||
BPUM_1346 122 -ATACAGGT---CAAGGATATCCAGCATGTATTC----CTGCAGAAAAAG 163
BSNT_02415___ 161 GCTATATATATGGCGAAGTATATGA---AGCAGATGAATTGTGTATACAT 207
||..|.||||.||.|||.|.||.|| |.|.|.|||...|| |..||
BPUM_1346 164 GCACTGTATACGGGGAATTGTACGAGGTAACCGCTGACGCGT---TGAAT 210
BSNT_02415___ 208 AAGCTCGATCAATTTTTTCAAGGATATCATAAAC----AAACGGTGT-TT 252
|||.|.|||..|.|.....||||.|||.|.||.| ||.|..||| .|
BPUM_1346 211 AAGATAGATGTACTAGAGGAAGGGTATGACAAGCAGGAAATCAATGTCAT 260
BSNT_02415___ 253 GTAGAAACGGAT----GTCGGGATTAAAATTGCGCTTATTTA----TTTT 294
| |||||| |||.| |||..| ||..|.|..|| ||..
BPUM_1346 261 G-----ACGGATCGAGGTCAG--TTAGCA--GCCGTGACATACACGTTGC 301
BSNT_02415___ 295 ATGAACAAAGACGGGT--GTGCCGGTTTTACGAAAATAAGCAGCGGCGAC 342
..||.|||| |.|..| |||| |.|...||||||..||.||...|
BPUM_1346 302 CAGAGCAAA-AGGCATCAGTGC-----TGAAAGAAATAAAGAGAGGGTGC 345
BSNT_02415___ 343 TGGAAAGAACATCAGATGAT--CAGCAAATCGAAAAATC--CCATTTATT 388
|||||||...||||..|| | ||||||| ||..||| ||.|.||||
BPUM_1346 346 TGGAAAGCTTATCAACTG-TGGCAGCAAA---AACCATCATCCTTCTATT 391
BSNT_02415___ 389 ATTTTGCCTATGGATCATGCATGGATAATGCCCGCTTTCAAAAA----GC 434
|||||||||||||.||.||.||||||.||||..|.||| || ||
BPUM_1346 392 ATTTTGCCTATGGCTCCTGTATGGATGATGCTAGATTT----AAGCTCGC 437
BSNT_02415___ 435 GGGAGTCGATCACTATTTTCAA------GATC--CAGTAGGAAGAGCTGT 476
.|.||||||||| |..|||||| .||| |.|| ||| ||
BPUM_1346 438 AGAAGTCGATCA-TCATTTCAAACAAATCATCGGCGGT-GGA------GT 479
BSNT_02415___ 477 TTTAAAAGGATACACAACCCGCTTCACGCTAAAAAGGGAAGACGGTTCAA 526
..||||.||.|..|||||..|.||.||..|....|||..|||.||.||||
BPUM_1346 480 ACTAAATGGTTTTACAACGAGATTTACCTTGGTGAGGCCAGATGGATCAA 529
BSNT_02415___ 527 GAGCGGACATGTTGGAAGACGGAGGAACAACAGAAGGCGTTTTATACCGT 576
||||.||.|||.|.|||||.||.||...||||||.||.|||||||| .|.
BPUM_1346 530 GAGCTGATATGGTAGAAGATGGCGGGGAAACAGAGGGTGTTTTATA-TGA 578
BSNT_02415___ 577 A-TCCCTTATTCTGCTCTCTC-CTATCTATATAAAAGGGAGGGCGTCGAA 624
| |.||||.|..||| |..|| .|||.|.||||||||.||.||||| |
BPUM_1346 579 AGTTCCTTTTGATGC-CATTCGTTATTTGTATAAAAGAGAAGGCGT---A 624
BSNT_02415___ 625 TCT---CTTACGTATCGGCCGGCATTTGTAGACGTTGA---AGCTGGCGG 668
|.| ..|||.|||||.||.||||||||.||.||..| ||.||....
BPUM_1346 625 TATGAAGGTACATATCGTCCAGCATTTGTCGATGTCAAAATAGGTGATCA 674
BSNT_02415___ 669 AAGGCACTACAAAGACTGTTTAACCTTTCTCGTCCTCCAAAAAGAAGCG- 717
||.| ||..|.|||||||||||||||||.||.||.||||| |||||
BPUM_1346 675 AATG---TATGAGGACTGTTTAACCTTTCTTGTGCTTCAAAA--AAGCGA 719
BSNT_02415___ 718 -GAAATTGCCCCGCCTCAGCACTATCAGATTGAAATCGAACGCGGAGCGG 766
|||||.||||||||....||.||||..|.||||||||||...|||||.|
BPUM_1346 720 AGAAATCGCCCCGCCAACTCATTATCGCAGTGAAATCGAAAAAGGAGCAG 769
BSNT_02415___ 767 AGCTGTATTT--GTCGCCTGA---GTTTACTGAAAA-----GCTCAAGCG 806
|.||.||||| | ||| |||...|.|||| |.|||
BPUM_1346 770 ACCTTTATTTAAG-----TGAAGCGTTCCGTAAAAAAATCCGTTCA---- 810
BSNT_02415___ 807 GCATATGAATTCGCT-GCCAAA----AGGATAA 834
||||||.||||..| ..|||| ||
BPUM_1346 811 -CATATGGATTCATTAATCAAACCGTAG----- 837
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