Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02415 and BPUM_1346

See Amino acid alignment / Visit BSNT_02415 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:53
# Commandline: needle
#    -asequence dna-align/BSNT_02415___ykqA.1.24716.seq
#    -bsequence dna-align/BPUM_1346.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02415___ykqA-BPUM_1346.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02415___ykqA-BPUM_1346.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02415___ykqA
# 2: BPUM_1346
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity:     534/933 (57.2%)
# Similarity:   534/933 (57.2%)
# Gaps:         195/933 (20.9%)
# Score: 1277.5
# 
#
#=======================================

BSNT_02415___      1 ------GTGAACTCGCTTCTGTTTGTATACGGGACATTAAGAAAGCATGA     44
                           ||.||   |.||.|.||||||||.||.||..||....|||||||
BPUM_1346          1 ATGACGGTAAA---GGTTTTATTTGTATATGGAACGCTATTGCAGCATGA     47

BSNT_02415___     45 AAA--------AAAC---CAT--------------CATTTGCTGGCACAA     69
                     |||        ||||   |||              .|||.|||    .||
BPUM_1346         48 AAAGCACCACGAAACGTACATGAAGGAAAGCAGGCTATTAGCT----AAA     93

BSNT_02415___     70 TCGGCATGTATCAATGAGCAGGCGAGAACAAAGGGAAGTTTGTTTGCTGC    119
                     ||.||.||.||.|.|                  |||||..|.|.||    
BPUM_1346         94 TCTGCTTGGATGAGT------------------GGAAGGATTTATG----    121

BSNT_02415___    120 AAAAGAGGTGCCCA--------CAGC-TGTTTTCAATGATGAAGATGAAG    160
                      |.|.||||   ||        |||| |||.|||    .||.|||..|||
BPUM_1346        122 -ATACAGGT---CAAGGATATCCAGCATGTATTC----CTGCAGAAAAAG    163

BSNT_02415___    161 GCTATATATATGGCGAAGTATATGA---AGCAGATGAATTGTGTATACAT    207
                     ||..|.||||.||.|||.|.||.||   |.|.|.|||...||   |..||
BPUM_1346        164 GCACTGTATACGGGGAATTGTACGAGGTAACCGCTGACGCGT---TGAAT    210

BSNT_02415___    208 AAGCTCGATCAATTTTTTCAAGGATATCATAAAC----AAACGGTGT-TT    252
                     |||.|.|||..|.|.....||||.|||.|.||.|    ||.|..||| .|
BPUM_1346        211 AAGATAGATGTACTAGAGGAAGGGTATGACAAGCAGGAAATCAATGTCAT    260

BSNT_02415___    253 GTAGAAACGGAT----GTCGGGATTAAAATTGCGCTTATTTA----TTTT    294
                     |     ||||||    |||.|  |||..|  ||..|.|..||    ||..
BPUM_1346        261 G-----ACGGATCGAGGTCAG--TTAGCA--GCCGTGACATACACGTTGC    301

BSNT_02415___    295 ATGAACAAAGACGGGT--GTGCCGGTTTTACGAAAATAAGCAGCGGCGAC    342
                     ..||.|||| |.|..|  ||||     |.|...||||||..||.||...|
BPUM_1346        302 CAGAGCAAA-AGGCATCAGTGC-----TGAAAGAAATAAAGAGAGGGTGC    345

BSNT_02415___    343 TGGAAAGAACATCAGATGAT--CAGCAAATCGAAAAATC--CCATTTATT    388
                     |||||||...||||..|| |  |||||||   ||..|||  ||.|.||||
BPUM_1346        346 TGGAAAGCTTATCAACTG-TGGCAGCAAA---AACCATCATCCTTCTATT    391

BSNT_02415___    389 ATTTTGCCTATGGATCATGCATGGATAATGCCCGCTTTCAAAAA----GC    434
                     |||||||||||||.||.||.||||||.||||..|.|||    ||    ||
BPUM_1346        392 ATTTTGCCTATGGCTCCTGTATGGATGATGCTAGATTT----AAGCTCGC    437

BSNT_02415___    435 GGGAGTCGATCACTATTTTCAA------GATC--CAGTAGGAAGAGCTGT    476
                     .|.||||||||| |..||||||      .|||  |.|| |||      ||
BPUM_1346        438 AGAAGTCGATCA-TCATTTCAAACAAATCATCGGCGGT-GGA------GT    479

BSNT_02415___    477 TTTAAAAGGATACACAACCCGCTTCACGCTAAAAAGGGAAGACGGTTCAA    526
                     ..||||.||.|..|||||..|.||.||..|....|||..|||.||.||||
BPUM_1346        480 ACTAAATGGTTTTACAACGAGATTTACCTTGGTGAGGCCAGATGGATCAA    529

BSNT_02415___    527 GAGCGGACATGTTGGAAGACGGAGGAACAACAGAAGGCGTTTTATACCGT    576
                     ||||.||.|||.|.|||||.||.||...||||||.||.|||||||| .|.
BPUM_1346        530 GAGCTGATATGGTAGAAGATGGCGGGGAAACAGAGGGTGTTTTATA-TGA    578

BSNT_02415___    577 A-TCCCTTATTCTGCTCTCTC-CTATCTATATAAAAGGGAGGGCGTCGAA    624
                     | |.||||.|..||| |..|| .|||.|.||||||||.||.|||||   |
BPUM_1346        579 AGTTCCTTTTGATGC-CATTCGTTATTTGTATAAAAGAGAAGGCGT---A    624

BSNT_02415___    625 TCT---CTTACGTATCGGCCGGCATTTGTAGACGTTGA---AGCTGGCGG    668
                     |.|   ..|||.|||||.||.||||||||.||.||..|   ||.||....
BPUM_1346        625 TATGAAGGTACATATCGTCCAGCATTTGTCGATGTCAAAATAGGTGATCA    674

BSNT_02415___    669 AAGGCACTACAAAGACTGTTTAACCTTTCTCGTCCTCCAAAAAGAAGCG-    717
                     ||.|   ||..|.|||||||||||||||||.||.||.|||||  ||||| 
BPUM_1346        675 AATG---TATGAGGACTGTTTAACCTTTCTTGTGCTTCAAAA--AAGCGA    719

BSNT_02415___    718 -GAAATTGCCCCGCCTCAGCACTATCAGATTGAAATCGAACGCGGAGCGG    766
                      |||||.||||||||....||.||||..|.||||||||||...|||||.|
BPUM_1346        720 AGAAATCGCCCCGCCAACTCATTATCGCAGTGAAATCGAAAAAGGAGCAG    769

BSNT_02415___    767 AGCTGTATTT--GTCGCCTGA---GTTTACTGAAAA-----GCTCAAGCG    806
                     |.||.|||||  |     |||   |||...|.||||     |.|||    
BPUM_1346        770 ACCTTTATTTAAG-----TGAAGCGTTCCGTAAAAAAATCCGTTCA----    810

BSNT_02415___    807 GCATATGAATTCGCT-GCCAAA----AGGATAA    834
                      ||||||.||||..| ..||||    ||     
BPUM_1346        811 -CATATGGATTCATTAATCAAACCGTAG-----    837


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