Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02414 and BPUM_1345
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:53
# Commandline: needle
# -asequence dna-align/BSNT_02414___kinC.1.24716.seq
# -bsequence dna-align/BPUM_1345___kinC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02414___kinC-BPUM_1345___kinC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02414___kinC-BPUM_1345___kinC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02414___kinC
# 2: BPUM_1345___kinC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1507
# Identity: 847/1507 (56.2%)
# Similarity: 847/1507 (56.2%)
# Gaps: 368/1507 (24.4%)
# Score: 2297.5
#
#
#=======================================
BSNT_02414___ 0 -------------------------------------------------- 0
BPUM_1345___k 1 GTGGAAAATGGTACAATTGACAAAGAATCTCAGGGCGGCAGGTGGAATCA 50
BSNT_02414___ 1 ----ATGAGAAAATATCAAGCTCGTATCAT-TTCCATC-ATTTTGGCAAT 44
|..|.||.||||||||..||.|||.| || ||| .||.|.|||.|
BPUM_1345___k 51 TTTGAACAAAACATATCAAGTGCGGATCGTGTT--ATCTGTTCTTGCATT 98
BSNT_02414___ 45 GATTTTTATAATGTTT----TGGGATTATTTATTTTATTTTATAGG---- 86
.|||||.|| ||| |||| ||||.|||||||.|.||||
BPUM_1345___k 99 TATTTTAAT----TTTAAGCTGGG---ATTTCTTTTATTATCTAGGTGGC 141
BSNT_02414___ 87 ---CAAAAACCCGATTAATTGGCCTGTTGATATTGTGTATACTGCAGTCA 133
||| |||||||||||..|.|||.|.|..|.|| |||||
BPUM_1345___k 142 TATCAA-------ATTAATTGGCCGCTCGATTTAGCCTTTA---CAGTC- 180
BSNT_02414___ 134 CGCTGG---TAAGTGTCTGGATGCTGGCTTAT-------TATATTGA--- 170
||.| |||..| |||| ||||.|||| |||.|.||
BPUM_1345___k 181 --CTTGTTATAACAG---GGAT-CTGGGTTATATCAGGCTATGTAGACCG 224
BSNT_02414___ 171 ----------------TGAG----AAACAGCAGCTGGTTAAGAAAATGAA 200
|.|| |||.|..|| ||||||.|||
BPUM_1345___k 225 CTTAAATCTACTTGTGTCAGACTTAAATACGAG-------AGAAAAAGAA 267
BSNT_02414___ 201 GGATAACGAA-TGGAAGTATAAACAGCTTTCTGAAGAAAAAAACCGCATC 249
|.| .||||| ||..|| |.|.||| .||.||.|||
BPUM_1345___k 268 GCA-CACGAACTGACAG----AGCGGCT------------GAATCGAATC 300
BSNT_02414___ 250 ATGGATAATTTGCAGGAAATCGTATTTCAAACGAATGCAAAAGGCGAAAT 299
|..|||||.|||||.||||||||.|||.||||.||||.||||||.|||||
BPUM_1345___k 301 ACAGATAACTTGCAAGAAATCGTCTTTGAAACAAATGAAAAAGGTGAAAT 350
BSNT_02414___ 300 TACATATTTAAACCAAGCGTGGGCATCAATAACCGGCTTTTCAATCAGTG 349
||..|..|||||.|||||.|||.||..|||.||.||||.|...|||..||
BPUM_1345___k 351 TATTTTCTTAAATCAAGCATGGACACAAATGACGGGCTATGACATCGATG 400
BSNT_02414___ 350 AATGTATGGGAACAATGTATAACGATTACTTCATAA--AAGAAAAGCACG 397
|||||.|.||.||.|||||.||..|.||||| |.| ||||..|.|.||
BPUM_1345___k 401 AATGTCTAGGTACCATGTACAATCAGTACTT--TGATCAAGAGGAACGCG 448
BSNT_02414___ 398 TAGCCGACCA--CATTAACACCCAAATCCAAAACAAAGCGTCTTCTGGCA 445
|.|.|.|.|| .|||| ||||
BPUM_1345___k 449 TGGTCCAGCATTTATTA--------------------------TCTG--- 469
BSNT_02414___ 446 TGTTTACG--GCAAA---ATACGTGAC----------------------A 468
||.|.|.| |||.| ||.||.||| .
BPUM_1345___k 470 TGATCAAGGAGCATAAGGATGCGGGACGGGTAGAGCTGCAGCTTCTCCAT 519
BSNT_02414___ 469 AAAAACGGCACGATTTTTTGGGGAGAAGTTCATTATAAACTTTACTATGA 518
|||.|.||.|.||...|.||||||||.||||||||.||.|||||.|.|||
BPUM_1345___k 520 AAAGAGGGAAAGAAGGTATGGGGAGACGTTCATTACAAGCTTTATTTTGA 569
BSNT_02414___ 519 CCGGGATGACCAATTTACAGGCAGCCTGGGTACAATGTCAGATATCACTG 568
|..|.||.||||.|||||.||..|..|.||.||..|..|.|||||.|| |
BPUM_1345___k 570 CGAGCATCACCAGTTTACCGGAGGAATTGGAACGGTAGCTGATATTAC-G 618
BSNT_02414___ 569 AGCGGAAAG-AGGCTGAAG-ATGAGCT---------CATTGAG--ATT-- 603
|....|||| |||| |||| .|||||| ||.|.|| |||
BPUM_1345___k 619 AAACAAAAGCAGGC-GAAGCTTGAGCTTGAAAGATCCAATCAGCAATTGC 667
BSNT_02414___ 604 -AATGAACGGCTGGCGAGGGAATCCCAGAAACTATCAATCACAAGTGAAC 652
||| ||.|||| ||.||.||..||.||.|..|..||.
BPUM_1345___k 668 AAAT-----GCAGGCG---------CAAAAGCTGGCAGTCGCTGGACAAA 703
BSNT_02414___ 653 TTGCCGCAGGTATTGCTCATGAGGTCAGAAACCCTTTAACATCTGTCAGT 702
|.|||||.||.||.||.|||||.||||||||.||..|.|||||.||.|.|
BPUM_1345___k 704 TAGCCGCTGGAATCGCCCATGAAGTCAGAAATCCACTGACATCCGTAAAT 753
BSNT_02414___ 703 GGTTTCCTCCAGATTATGAAAACACAATATCCGGACAGAAAAGACTATTT 752
|||||..|.|||.|.|||||.|||||||||||.||.||||..||.|||||
BPUM_1345___k 754 GGTTTTTTGCAGCTGATGAAGACACAATATCCTGAAAGAACCGATTATTT 803
BSNT_02414___ 753 TGACATCATCTTTTCAGAGATTAAAAGAATCGATTTAGTGCTCAGCGAGC 802
||||||.|||||||||||.||||||.|.||.|||||.||..|.||.||||
BPUM_1345___k 804 TGACATTATCTTTTCAGAAATTAAACGGATTGATTTTGTTTTAAGTGAGC 853
BSNT_02414___ 803 TGCT-------GCTTGCAAAACCGCAGGCAATCACATTT--AAAACACAC 843
|||| ||| ||.||.||..|..|| ||||| ||.| |..|
BPUM_1345___k 854 TGCTTGTATTGGCT----AAGCCTCAATCGGTC-CATTTTCAAGA-AGTC 897
BSNT_02414___ 844 CAGCTTAATGAG-ATCTTGAAACAAGTCACGACATTGCTTGAT-----AC 887
||||||.||||| .|||.| ||||||| .|||.|||.|| ||
BPUM_1345___k 898 CAGCTTCATGAGCTTCTAG-AACAAGT-----GATTACTTTATTAAAAAC 941
BSNT_02414___ 888 CAATGCAATTCTGTCCAATATCGTCATAGAG-AAAAATTTCAAAG--AGA 934
.|||||..|||||||.|||||.|.|.|..|| |...||||.|||| ||
BPUM_1345___k 942 AAATGCCGTTCTGTCAAATATTGACCTCAAGCAGCCATTTAAAAGGCAG- 990
BSNT_02414___ 935 CAGATGGCTGTATG--ATTAATGGAGACGAAAATCAGCTGAAGCAGGTCT 982
||| |||| .|| ||....|.|||||..|||||..||||||||.|.|
BPUM_1345___k 991 --GAT-GCTG-GTGCCATCCTCGCAGACGCTAATCAAATGAAGCAGCTGT 1036
BSNT_02414___ 983 TTATCAACATCATTAAAAACGGAATTGAGGCAATGCCAAAGGGTGGTGTC 1032
|.||.||..|.||.|||||.|..||||||||||||||..|.||||||..|
BPUM_1345___k 1037 TCATTAATTTAATCAAAAATGCGATTGAGGCAATGCCTGAAGGTGGTAGC 1086
BSNT_02414___ 1033 GTAACCATTTCAACTGCTAAAACCGCCTCTCATGCAGT------------ 1070
.||..|||.||.||.| |||| |||
BPUM_1345___k 1087 ATATACATATCTACAG--AAAA-------------AGTATTGAATGAATG 1121
BSNT_02414___ 1071 ---GATAAGCGTAAAGGATGAAGGAAACGGCATGCCGCAGGAAAAGCTGA 1117
|||.|.|.|..|.|||||||||||.||.||| .||||
BPUM_1345___k 1122 GAAGATTACCATTCAAGATGAAGGAAAAGGGATG-----------TCTGA 1160
BSNT_02414___ 1118 AGCAGATTGGCAAA-----------CCTTTTTATTCAACAAAAGAAAAGG 1156
||.||||...|||| |||||.|.|||.||.|||.||.|.|
BPUM_1345___k 1161 AGAAGATATTCAAAAAATATATGATCCTTTCTTTTCCACGAAAAAAGAAG 1210
BSNT_02414___ 1157 GCACTGGACTGGGACTTCCCATTTGTTTGAGAATCCTGAAGGAACATGAC 1206
|.||.||.||.||.||..||||.|||..||.|||..|.||.||.|||.||
BPUM_1345___k 1211 GAACAGGGCTTGGTCTGACCATCTGTGCGACAATTTTAAAAGATCATCAC 1260
BSNT_02414___ 1207 GG-GGAATTGAAAATCG---AAAGTGAAGC-TGGAAAAGGCAGCGTCTTT 1251
|| .||||.|| || .||||| ||| |||||||||||..|..|||
BPUM_1345___k 1261 GGAAGAATGGA----CGTGTCAAGTG-AGCTTGGAAAAGGCACAGCTTTT 1305
BSNT_02414___ 1252 CAAGTGGTTTTGCCTTT-------AAAATCAGACAGC-------TGA--- 1284
||..|...||||||..| ||||.|||||||| |||
BPUM_1345___k 1306 CATATTTATTTGCCAGTGTGTCAAAAAAGCAGACAGCAGCAAGTTGAGAG 1355
BSNT_02414___ 1284 ------- 1284
BPUM_1345___k 1356 GACGTGA 1362
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