Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02406 and BPUM_1339
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:53
# Commandline: needle
# -asequence dna-align/BSNT_02406.1.24716.seq
# -bsequence dna-align/BPUM_1339___ykpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02406-BPUM_1339___ykpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02406-BPUM_1339___ykpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02406
# 2: BPUM_1339___ykpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1623
# Identity: 1108/1623 (68.3%)
# Similarity: 1108/1623 (68.3%)
# Gaps: 243/1623 (15.0%)
# Score: 4370.0
#
#
#=======================================
BSNT_02406 1 ATGATTGCTGTAAATAATGTAAGCTTGCGGTTTGCGGATCGCAAGTTATT 50
||||||||.|||||||||||.||.|||||.|||||.|||||.||..||||
BPUM_1339___y 1 ATGATTGCAGTAAATAATGTTAGTTTGCGATTTGCTGATCGTAAACTATT 50
BSNT_02406 51 TGAAGATGTTAATATTAAATTTACCCCAGGCAACTGCTATGGGTTAATTG 100
||||||.||.|||||||||||.||.||.|||||||||||.||.|||||||
BPUM_1339___y 51 TGAAGAAGTAAATATTAAATTCACTCCTGGCAACTGCTACGGTTTAATTG 100
BSNT_02406 101 GTGCAAACGGTGCCGGTAAATCAACGTTTCTAAAGGTGCTGTCAGGCGAA 150
||||.||.||.||.|||||||||||||||||||||.|.||.|||||.|||
BPUM_1339___y 101 GTGCCAATGGAGCTGGTAAATCAACGTTTCTAAAGATTCTTTCAGGTGAA 150
BSNT_02406 151 ATCGAGCCTCAGACAGGCGACGTGCATATGAGTCCTGGCGAGCGTCTTGC 200
||||||.|||||||||||||.||.||||||||.|||||.||||||.|.||
BPUM_1339___y 151 ATCGAGGCTCAGACAGGCGATGTTCATATGAGCCCTGGTGAGCGTTTAGC 200
BSNT_02406 201 CGTCTTGAAGCAGAACCATTTTGAGTACGAAGAGTATGAAGTGCTGAAAG 250
..|.||.||.||||||||.|||||.||||||||.|.||||||..|.||||
BPUM_1339___y 201 GATTTTAAAACAGAACCACTTTGAATACGAAGAATTTGAAGTATTAAAAG 250
BSNT_02406 251 TGGTCATTATGGGCCACAAACGCCTGTATGAAGTCATGCAGGAGAAAGAC 300
|||||||.|||||.||||||||.||.|||||.||.||||||||||||||.
BPUM_1339___y 251 TGGTCATGATGGGTCACAAACGTCTATATGATGTGATGCAGGAGAAAGAT 300
BSNT_02406 301 GCTATTTACATGAAGCCTGATTTCTCAGATGAGGATGGGATTCGTGCTGC 350
||.|||||.|||||.|||||||||||||||||.||.||.||||||||.||
BPUM_1339___y 301 GCGATTTATATGAAACCTGATTTCTCAGATGAAGACGGAATTCGTGCAGC 350
BSNT_02406 351 TGAGCTAGAAGGTGAATTCGCGGAACTGAACGGTTGGGAAGCGGAAAGTG 400
.|||||.||||||||.|||||.||..|.|||||.||||||||.|||||||
BPUM_1339___y 351 AGAGCTTGAAGGTGAGTTCGCTGAGTTAAACGGCTGGGAAGCAGAAAGTG 400
BSNT_02406 401 AAGCTGCGATCCTGTTAAAAGGCCTTGGTATCTCAGAAGA-TCTGCACAC 449
||||.||.|||.|.||||||||.|||||.||..||| ||| .||.||..|
BPUM_1339___y 401 AAGCAGCAATCTTATTAAAAGGTCTTGGCATACCAG-AGAGCCTTCAATC 449
BSNT_02406 450 AAAAAAGATGGCAGACCTCGGCGGTTCGGAGAAGGTAAAAGTTCTCTTGG 499
.||.||.|||.|.||.||.||||||||.||.|||||.|||||..|..|.|
BPUM_1339___y 450 GAAGAAAATGTCTGAGCTTGGCGGTTCTGAAAAGGTCAAAGTATTACTAG 499
BSNT_02406 500 CACAGGCATTATTCGGCAAGCCGGATGTTCTGCTGCTCGATGAGCCGACG 549
|.||.||.|||||.||||||||.||.|||||.||.||.||||||||.|||
BPUM_1339___y 500 CTCAAGCTTTATTTGGCAAGCCTGACGTTCTTCTTCTGGATGAGCCAACG 549
BSNT_02406 550 AACCACTTGGACCTTCAGGCAATCCAGTGGCTTGAAGAGTTTCTGATTAA 599
||||||||||||.|.||.||.|||||||||||.||||||||.||.|||||
BPUM_1339___y 550 AACCACTTGGACTTACAAGCCATCCAGTGGCTGGAAGAGTTCCTCATTAA 599
BSNT_02406 600 CTTTGAAAACACAGTTATTGTCGTATCCCATGACCGTCACTTCTTAAATA 649
.||||||||.||.||.||.|||||.||.||||||||||||||||||||.|
BPUM_1339___y 600 TTTTGAAAATACCGTGATCGTCGTTTCGCATGACCGTCACTTCTTAAACA 649
BSNT_02406 650 AAGTATGTACGCACATTGCCGACCTTGATTTTAACAAAATTCAAATCTAT 699
||||||||||.||.|||||.|||||.||.||....|||||||||.|.|||
BPUM_1339___y 650 AAGTATGTACACATATTGCGGACCTAGACTTCGGAAAAATTCAAGTATAT 699
BSNT_02406 700 GTAGGAAACTATGATTTCTGGTACGAGTCAAGCCAGCTGGCGTTAAAGCT 749
||.||.|||||||||||||||||.|||||.||||||||.|||.|.||.||
BPUM_1339___y 700 GTCGGTAACTATGATTTCTGGTATGAGTCCAGCCAGCTAGCGCTGAAACT 749
BSNT_02406 750 TTCTCAAGAAGCGAACAAGAAAAAAGAAGAGCAGATTAAACAGCTTCAAG 799
|..||||||.||.||.|||||||||||||||||.|||||.||||||||||
BPUM_1339___y 750 TAGTCAAGATGCAAATAAGAAAAAAGAAGAGCAAATTAAGCAGCTTCAAG 799
BSNT_02406 800 AGTTTGTCGCTAGATTCAGCGCCAATGCGTCTAAATCTAAGCAGGCTACA 849
||||.||.|||.|.|||||.||.||.||.||||||||.|||||.||.||.
BPUM_1339___y 800 AGTTCGTTGCTCGGTTCAGTGCGAACGCTTCTAAATCGAAGCAAGCGACC 849
BSNT_02406 850 TCAAGAAAGAAACTTCTCGAAAAAATCACGCTGGATGATATTAAACCGTC 899
||||||||||||.|.||.||.||||||.|..|.||.||||||||.||.||
BPUM_1339___y 850 TCAAGAAAGAAATTGCTTGATAAAATCTCTTTAGACGATATTAAGCCATC 899
BSNT_02406 900 TTCCCGCCGCTATCCTTATGTTAACTTCACGCCGGAACGGGAAATCGGAA 949
|||.||....|||||.||||||.|.||..||||.||.||.||||||||||
BPUM_1339___y 900 TTCACGTAAATATCCGTATGTTCATTTTGCGCCAGAGCGCGAAATCGGAA 949
BSNT_02406 950 ATGATGTTCTTCGCGTGGAAGGCTTAACAAAAACAATCGATGGCGTAAAG 999
|||||||.||||..||.|||||..||.|.||||||||.||.||.|||||.
BPUM_1339___y 950 ATGATGTCCTTCAAGTAGAAGGTCTATCGAAAACAATTGACGGTGTAAAA 999
BSNT_02406 1000 GTGCTTGACAATGTCAGCTTTATTATGAATCGAGAAGATAAAATTGCTTT 1049
||.|||||.||.|||||.|||||.||||||||.||.|||||||||||.||
BPUM_1339___y 1000 GTACTTGATAACGTCAGTTTTATCATGAATCGCGAGGATAAAATTGCGTT 1049
BSNT_02406 1050 CACT-GGCCGAAATGAACTTGCTGTTACTACGCTGTTTAAAATCATTTCC 1098
| || .||||.|||||.||.||.||..||||..|.||||||||..||.|.
BPUM_1339___y 1050 C-CTAAGCCGTAATGAGCTGGCAGTGTCTACTTTATTTAAAATTCTTGCT 1098
BSNT_02406 1099 GGGGAAATGGAAGCTGACAGCGGAACGTTTAAATGGGGTGTTACCACATC 1148
||.||.||||||.|.||||.|||.||.|.|||||||||.||.||.|||||
BPUM_1339___y 1099 GGTGAGATGGAACCAGACAACGGGACATATAAATGGGGCGTCACAACATC 1148
BSNT_02406 1149 TCAAGCGTATTTTCCAAAAGACAACAGCGAATATTTCGAAGGCAGTGATC 1198
||||||.|.|||.||.||||||||.||.|||||.||.|||||.|..|||.
BPUM_1339___y 1149 TCAAGCCTTTTTCCCGAAAGACAATAGTGAATACTTTGAAGGAAACGATG 1198
BSNT_02406 1199 TGAACCTTGTAGACTGGCTTCGCCAATATTCTCCGCACGACCAAAGTGAG 1248
|..|.||.||.||.|||||||||||.||||||||..|.||.|||||.|||
BPUM_1339___y 1199 TTGATCTAGTGGATTGGCTTCGCCAGTATTCTCCTAATGATCAAAGCGAG 1248
BSNT_02406 1249 AGCTTTTTACGCGGTTTCTTA-GACGCATGCTGTTCTCTGGAGAAGAAGT 1297
|||||.||||||||.|||||| ||||.|||||.|||||||||||||||||
BPUM_1339___y 1249 AGCTTCTTACGCGGATTCTTAGGACGTATGCTTTTCTCTGGAGAAGAAGT 1298
BSNT_02406 1298 CCACAAAAAAGCAAATGTACTT-TCCGGGGGAGAAAAGGTCCGCTGTATG 1346
..|.||||||||||..|| ||| ||.||.|||||||||||.||.||||||
BPUM_1339___y 1299 AAAGAAAAAAGCAAGCGT-CTTATCAGGAGGAGAAAAGGTTCGTTGTATG 1347
BSNT_02406 1347 CTGTCGAAAGCGATGCTTTCTGGCGCCAATAT-----TTTAA-------- 1383
.|.||||||..||||||.||.||.||.|||.| ||..|
BPUM_1339___y 1348 TTATCGAAAATGATGCTGTCAGGAGCGAATGTACTGCTTCTAGATGAGCC 1397
BSNT_02406 1383 -------------------------------------------------- 1383
BPUM_1339___y 1398 GACGAACCACTTAGACCTAGAATCCATTACGGCGCTGAATAACGGTTTAA 1447
BSNT_02406 1383 -------------------------------------------------- 1383
BPUM_1339___y 1448 TGAGCTTTAAAGGAGCGATGCTCTTCTCATCTCATGACCACCAGTTTGTT 1497
BSNT_02406 1383 -------------------------------------------------- 1383
BPUM_1339___y 1498 GAAACAGTGGCAAACCGTATTATCGAAGTGACGCCAAATGGCATCGTCGA 1547
BSNT_02406 1383 -------------------------------------------------- 1383
BPUM_1339___y 1548 TAAACAAACAACATATGATGAGTTCTTATCAGATCAAGAGATTCAAAAGA 1597
BSNT_02406 1383 ----------------------- 1383
BPUM_1339___y 1598 GACTCGTTGAGCTTTATGCGTAA 1620
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