Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02405 and BPUM_1338

See Amino acid alignment / Visit BSNT_02405 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:53
# Commandline: needle
#    -asequence dna-align/BSNT_02405___ykoA.1.24716.seq
#    -bsequence dna-align/BPUM_1338___ykoA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02405___ykoA-BPUM_1338___ykoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02405___ykoA-BPUM_1338___ykoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02405___ykoA
# 2: BPUM_1338___ykoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 290
# Identity:     185/290 (63.8%)
# Similarity:   185/290 (63.8%)
# Gaps:          34/290 (11.7%)
# Score: 519.5
# 
#
#=======================================

BSNT_02405___      1 TTGAGGCTTTTAACACTTACTGAATATTGCTTACTGATCTTTTTTACGGG     50
                     |||||..|..|.|||||.|..|||||.||.|||.||||.||.||||.|||
BPUM_1338___y      1 TTGAGATTACTTACACTGATGGAATACTGTTTATTGATTTTCTTTATGGG     50

BSNT_02405___     51 CTTTTACCTTGCCGTAACAGGCTTTACCGCCAAAGATATCGGCTTATATA    100
                     ..||||..|..|.|.|||||||||||..||.|..|||.|.|||.|.||||
BPUM_1338___y     51 TATTTATTTATCTGCAACAGGCTTTAATGCGAGGGATTTTGGCCTTTATA    100

BSNT_02405___    101 TAGGCATAGCCCTTATTTACATATTTTCGCACATTTTTTCTAAACGGCTT    150
                     |.||..|.|..||||||||||.|.|....|||||.|||||.|||||..||
BPUM_1338___y    101 TTGGGCTTGTGCTTATTTACACACTGGTACACATCTTTTCGAAACGCTTT    150

BSNT_02405___    151 TTAGAAAAGCGCGGAAAAGAGAA-CAAACAGGTTCACCTTTTCTTCAG--    197
                     |||.|||||||.||.|||||.|| ||.| ||||   |...||.|||.|  
BPUM_1338___y    151 TTACAAAAGCGAGGGAAAGAAAATCATA-AGGT---CGGATTGTTCCGAT    196

BSNT_02405___    198 -TGTGCTAGCTATTATCGGTTCAG--TGTTCATCACGGTT-----TTATG    239
                      |||..||||.||||..||.||.|  |.|||.||...|||     ||.||
BPUM_1338___y    197 CTGTTTTAGCCATTACTGGGTCTGTCTTTTCTTCTGTGTTGGCGATTGTG    246

BSNT_02405___    240 --CATTGCATT--GGT-----CGCTTCTTTTTCAAAATAA    270
                       |||||  ||  |||     |||        ||||.|||
BPUM_1338___y    247 CTCATTG--TTACGGTGCTCACGC--------CAAATTAA    276


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.