Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02400 and BPUM_1334

See Amino acid alignment / Visit BSNT_02400 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_02400___fruR.1.24716.seq
#    -bsequence dna-align/BPUM_1334___fruR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02400___fruR-BPUM_1334___fruR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02400___fruR-BPUM_1334___fruR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02400___fruR
# 2: BPUM_1334___fruR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity:     551/775 (71.1%)
# Similarity:   551/775 (71.1%)
# Gaps:          38/775 ( 4.9%)
# Score: 1878.0
# 
#
#=======================================

BSNT_02400___      1 ATGCTAACTCCTGAACGGCATCAATTGATTAT----TGATCAAATAGAAA     46
                     |||.||||.||.|||.|.||||||.|.|||||    ||.|    |||||.
BPUM_1334___f      1 ATGTTAACACCGGAAAGACATCAACTCATTATCGACTGTT----TAGAAG     46

BSNT_02400___     47 AGCATGATGTGGTAAAGATTCAAGAGCTTATA--AATCTGACTAATGCTT     94
                     |..|||||||..|.||.||.||.|| |||| |  |.|.||||..||||.|
BPUM_1334___f     47 AAAATGATGTCATCAAAATACAGGA-CTTA-ACGATTATGACGGATGCGT     94

BSNT_02400___     95 CTGAATCAACAATCAGAAGAGATTTATCGACCCTTGAAGAACGCGGTTTT    144
                     |||||||.||.||.||||||||||||||..|||||||||||...||.|||
BPUM_1334___f     95 CTGAATCTACTATTAGAAGAGATTTATCAGCCCTTGAAGAAAAAGGATTT    144

BSNT_02400___    145 TTAAAGCGCGTTCATGGTGGAGCGGCCAAGCTTTCCGATATCAGACTTGA    194
                     .||||..|.||.||.||.|||||.||||||.|.||...||||.|||||||
BPUM_1334___f    145 CTAAAAAGAGTCCACGGGGGAGCAGCCAAGATATCAAGTATCCGACTTGA    194

BSNT_02400___    195 ACCCGATATGCTTGAAAAATCATCCAAAAACCTTCACGATAA---ATTGA    241
                     |||.|||.|..||||.|||||..|||||||||||||.||.||   |||| 
BPUM_1334___f    195 ACCAGATGTATTTGAGAAATCTGCCAAAAACCTTCAAGAAAAGTCATTG-    243

BSNT_02400___    242 AAATTGCTGAAAAAGCAGCTTTTCTTTTAGAAGAAGGGGATTGCATTTAC    291
                       |||||.||...|||.|||...||||||.||.||||.|||||.|||||.
BPUM_1334___f    244 --ATTGCGGAGGCAGCTGCTGCACTTTTAAAACAAGGCGATTGTATTTAT    291

BSNT_02400___    292 CTTGATGCAGGCACGACGACATTGCACATGATTGATTTTATGGATAAAAC    341
                     .|.|||||.||.|||||.|||..|||.||||||||.|.|||||||    |
BPUM_1334___f    292 TTAGATGCTGGTACGACCACACAGCAAATGATTGAATATATGGAT----C    337

BSNT_02400___    342 CA----AAGATATTGTCGTTGTCACAAACGGGGTGATGCATATCGATGCA    387
                     ||    ||||||||||.||.||.||||||||.||.|||||.||.||.|||
BPUM_1334___f    338 CAGATCAAGATATTGTTGTCGTGACAAACGGTGTTATGCACATTGAAGCA    387

BSNT_02400___    388 TTAATAAGGAAAGAAATTTCTTTTTATCTGCTTGGAGGATACGTAAAGCA    437
                     .|.||.||.||||..|||||||||||..||.|.||.||||..||.||.||
BPUM_1334___f    388 CTCATGAGAAAAGGCATTTCTTTTTACTTGATAGGCGGATCAGTGAAACA    437

BSNT_02400___    438 CAGAACGGGCGCGATTATTGGAGGCGCTTCACTGATTGCCATGGACCAGT    487
                     ..||||.||.||.||..|.||||.|||..|..|||..||.|||||.||.|
BPUM_1334___f    438 TCGAACAGGAGCCATGGTCGGAGCCGCAGCTTTGACGGCGATGGAACATT    487

BSNT_02400___    488 ACAGATTTGACAAGAGTTTTCTGGGGACAAACGGTGTCCATACAGAGGCT    537
                     |..|.||||||||.||.|||.|.|||||.||||||.|.|||.|.|||||.
BPUM_1334___f    488 ATCGTTTTGACAAAAGCTTTGTTGGGACGAACGGTATTCATCCCGAGGCG    537

BSNT_02400___    538 GGATTCACAACGCCGGACCCTGATGAAGCCCTTTTAAAACAGAAAGCGAT    587
                     ||.||.|||||.||.|||||.||.|||||.||..|.|||.|.|..||.||
BPUM_1334___f    538 GGGTTTACAACACCTGACCCAGAGGAAGCGCTCATGAAAAAAAGGGCCAT    587

BSNT_02400___    588 CAAACAGGCAAAACACGCTTACGTCTTAGCAGACCCTTCGAAGTTCGGAG    637
                     .||.|||||.|||.|..|.||..|.|||.||||..|.||||||||.||.|
BPUM_1334___f    588 GAAGCAGGCGAAAAAAACCTATATTTTAACAGATGCCTCGAAGTTTGGCG    637

BSNT_02400___    638 AAATTTCATTTTCGGCATTCGCCGCAATAG------GCGACGCAACAATC    681
                     ||||.||.|||||..|.||.||     |||      | ||.||.||.||.
BPUM_1334___f    638 AAATATCGTTTTCAACCTTTGC-----TAGTTTACAG-GAAGCCACCATT    681

BSNT_02400___    682 ATTACGACTGACGCTGAAGAGCTTACATTCGATAATTACCAAGAAAAAAC    731
                     ||.||.|..|||||..|||||..|.||||||||||||||||.||||||||
BPUM_1334___f    682 ATCACAAACGACGCAAAAGAGGATTCATTCGATAATTACCATGAAAAAAC    731

BSNT_02400___    732 TGTCGTAAAGGTAGTGAAACCATGA    756
                     .||..||||||||||||||.|||||
BPUM_1334___f    732 GGTTATAAAGGTAGTGAAAACATGA    756


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02400 and BPUM_1334

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
