Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02399 and BPUM_1333

See Amino acid alignment / Visit BSNT_02399 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_02399___yknZ.1.24716.seq
#    -bsequence dna-align/BPUM_1333___yknZ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02399___yknZ-BPUM_1333___yknZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02399___yknZ-BPUM_1333___yknZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02399___yknZ
# 2: BPUM_1333___yknZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1258
# Identity:     840/1258 (66.8%)
# Similarity:   840/1258 (66.8%)
# Gaps:         128/1258 (10.2%)
# Score: 2539.0
# 
#
#=======================================

BSNT_02399___      1 ATGAGCCTGTTAGAAAACATCAGAATGGCTCTAAGCTCTGTCCTTGCCCA     50
                     ||||..||.||.|||||.||||.|||.||..|.|..|||||..|.||.||
BPUM_1333___y      1 ATGAAACTCTTTGAAAATATCAAAATAGCGATGAATTCTGTTTTAGCTCA     50

BSNT_02399___     51 TAAAATGCGTTCGATCTTAACGATGCTCGGCATTATCATTGGTGTAGGCT    100
                     ||||.|.|||||.||.|||||||||||.||.|||||.||||||||.||.|
BPUM_1333___y     51 TAAATTACGTTCTATTTTAACGATGCTTGGGATTATTATTGGTGTTGGAT    100

BSNT_02399___    101 CTGTCATTGTTGTCGTTGCGGTAGGACAAGGAGGCGAGCAAATGCTGAAG    150
                     |.|||||||..||.||.||..|.||.|||||.||||||||||||||.|| 
BPUM_1333___y    101 CAGTCATTGCGGTTGTAGCTATCGGTCAAGGCGGCGAGCAAATGCTAAA-    149

BSNT_02399___    151 CAG--TCGA--TCAGCGGCCCGGGAAATACTGTGGAGCTGTAC-TATATG    195
                      ||  ||||  |||  ||.||....|||||.||.||..|| || ||||.|
BPUM_1333___y    150 -AGGATCGATTTCA--GGTCCAAACAATACCGTTGATATG-ACGTATACG    195

BSNT_02399___    196 CCTAGCGACGAGGAGCT---GGCAAGCAACCCGAACGCCGCAGCTGAATC    242
                     |||...|||||.|||.|   .|||   ||.||.||.||     .|.|.||
BPUM_1333___y    196 CCTTCTGACGAAGAGTTAAATGCA---AATCCTAATGC-----TTTATTC    237

BSNT_02399___    243 TACG-----TTTACAGAAAACGATATT-AAAGGTTTAA---AAGGAATAG    283
                     .|||     |||||.|||.|.||.||| ||||..||||   ||.||||  
BPUM_1333___y    238 GACGCCACATTTACTGAAGAAGACATTAAAAGCATTAAGACAATGAAT--    285

BSNT_02399___    284 AAGGCATTAAACAAGTCGTTGCTTCGACTTCTGAAAGTATGAAAGC-GCG    332
                       ||..|.||.||.||.|...||||||||.|..||.|.||| .||| |.|
BPUM_1333___y    286 --GGAGTGAATCAGGTTGCCTCTTCGACTGCGCAAGGAATG-CAGCTGAG    332

BSNT_02399___    333 TTATCACGAAGAAGAAAC------CGATGCTACGGTTAACGGAATAAATG    376
                     .|.||      ||||.||      .|||||.||.||||||||.|||||||
BPUM_1333___y    333 ATTTC------AAGATACGACAGTGGATGCGACAGTTAACGGTATAAATG    376

BSNT_02399___    377 ATGGATACATGAATGTCAATTCTTTAGAAATCGAAAGCGGCAGAACA---    423
                     |.||.||.|.|||||||.||||.|||.||||    |||.|.||.|||   
BPUM_1333___y    377 AAGGGTATACGAATGTCCATTCATTACAAAT----AGCAGAAGGACAGAA    422

BSNT_02399___    424 -TTTACCGACAATGACTTT-----CTCGCGGGGAATAGAGCCGGAATCAT    467
                      ||.|..||.|.|||||||     |     ||.|..|||||||...|.||
BPUM_1333___y    423 TTTAAAAGATATTGACTTTAGAAGC-----GGCAGAAGAGCCGCCCTGAT    467

BSNT_02399___    468 CTCTCAAAAGATGGCT-----GAAGAACTGTTCGAT---AAAACCTCCCC    509
                     ||||     ||.||||     .|||||.|.||..||   ||.|...||  
BPUM_1333___y    468 CTCT-----GAAGGCTTACAAAAAGAATTATTTAATGGCAAGAAGGCC--    510

BSNT_02399___    510 TTTAGGTGAAGTTGTCTGGATAAACGGACAGCCCGTTGAAATTATCGGTG    559
                      ||.||.|||.|..|.|||||.|||||||||||.||||||.|.|||||||
BPUM_1333___y    511 -TTGGGCGAAATGATTTGGATGAACGGACAGCCAGTTGAAGTCATCGGTG    559

BSNT_02399___    560 TGCTGA---AAAAAGAAACAGGCTTGCTTTCTTTCGGTTTAAGTGAAATG    606
                     |.|| |   |||.||||  |||..|||||||.||||.|.|.|.||||.|.
BPUM_1333___y    560 TTCT-AGCCAAACAGAA--AGGGATGCTTTCATTCGATATGAATGAAGTA    606

BSNT_02399___    607 TATGTGCCATTTAATATGATGAAATCCTCTTTTGGCA-CAAGCGATTTCA    655
                     |||||.||||||...|||.|.|..|||.|.|||||.| ||| .||.|.|.
BPUM_1333___y    607 TATGTCCCATTTGCAATGCTTACCTCCACATTTGGGATCAA-TGAATACG    655

BSNT_02399___    656 GTAACGTATCATTGCAGGTCGAATCA-GCAGACGACATAAAATCGGCAGG    704
                     .|||..|.|||.|.||.||||.| || ||.|     ||.||||  |.|||
BPUM_1333___y    656 ATAAGTTGTCAATTCAAGTCGCA-CATGCTG-----ATCAAAT--GAAGG    697

BSNT_02399___    705 AA------AAGAA----GCAGCACAGCTGGTAAATGACAATCATGGCACA    744
                     ||      |||||    ||.|||   .|..|||||||.||||||...|||
BPUM_1333___y    698 AAGTAGGGAAGAATGCGGCTGCA---TTATTAAATGAAAATCATCATACA    744

BSNT_02399___    745 GAGGATTCGTATCAAGTGATGAACATGGAGGAGATTGCGGCCGGAATTGG    794
                     ||.|||.|.|||.||.||||.||.|||||.||.||.||.|..||.||.||
BPUM_1333___y    745 GAAGATGCTTATGAAATGATCAATATGGAAGAAATCGCAGAAGGCATCGG    794

BSNT_02399___    795 -CAAGGTAACGGCAATTATGACGACGATTATCGGCTCAATTGCAGGTATT    843
                      ||| .|.|||.|..|||||||.||.||.||.||||||||.||.||.|||
BPUM_1333___y    795 TCAA-ATCACGTCCGTTATGACAACAATCATTGGCTCAATAGCTGGAATT    843

BSNT_02399___    844 TCCCTTTTGGTCGGCGGAATCGGTGTCATGAATATCATGCTCGTATCAGT    893
                     ||..|..|.||||||||.|||||.||.||||||||||||||.||.||.||
BPUM_1333___y    844 TCGTTACTTGTCGGCGGTATCGGAGTGATGAATATCATGCTTGTTTCTGT    893

BSNT_02399___    894 CACAGAACGGACACGGGAAATTGGAATCAGAAAATCCCTCGGTGCGACGA    943
                     .|||||..|||||.|||||||.||.||..|||||.|..|.||.||.||||
BPUM_1333___y    894 GACAGAGAGGACAAGGGAAATCGGTATTCGAAAAGCAATTGGAGCAACGA    943

BSNT_02399___    944 GGGGACAGATTCTGACTCAGTTTTTAATTGAGTCAGTCGTATTGACGCTG    993
                     |.|..||.||.||...|||.||||||||||||||.|||||.||.||..||
BPUM_1333___y    944 GAGCTCAAATACTCGTTCAATTTTTAATTGAGTCTGTCGTGTTAACCATG    993

BSNT_02399___    994 ATTGGCGGTCTGGTCGGGATTGGCATT--GGATACGGAGGGGCCGGGCTT   1041
                     ||.||.||..||.|.|||||| |||.|  |.||| ||.||.|||..|.|.
BPUM_1333___y    994 ATCGGTGGGTTGATGGGGATT-GCACTAGGTATA-GGCGGTGCCTCGTTA   1041

BSNT_02399___   1042 GTTTCAGCCATTGCGGGCTGGCCGTCACTCA-TATCCTGGCAGGT----T   1086
                     ||.|||..||||||.||||||||||| ||.| ||||.|||||..|    |
BPUM_1333___y   1042 GTATCACTCATTGCTGGCTGGCCGTC-CTTAGTATCTTGGCAAATCATCT   1090

BSNT_02399___   1087 GTATGCGGGGGCGTGCTGTTCAGTATGCTCATTGGTGTTATTTTCGGCAT   1136
                     ||||    .||.||||||||.||||||||.|||||..||.||||.||..|
BPUM_1333___y   1091 GTAT----AGGTGTGCTGTTTAGTATGCTAATTGGGATTGTTTTTGGGTT   1136

BSNT_02399___   1137 GCTTCCTGCAAATAAAGCTGCAAAGCTTGATCCCATTGAAGCGCTGCGTT   1186
                     ..|||||||.||||||||.||||..||.|||||.|||||..|.||..|.|
BPUM_1333___y   1137 AATTCCTGCGAATAAAGCAGCAAGACTAGATCCGATTGATTCTCTTAGAT   1186

BSNT_02399___   1187 ATGAGTAG   1194
                     ||||.||.
BPUM_1333___y   1187 ATGAATAA   1194


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