Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02399 and BPUM_1333
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_02399___yknZ.1.24716.seq
# -bsequence dna-align/BPUM_1333___yknZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02399___yknZ-BPUM_1333___yknZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02399___yknZ-BPUM_1333___yknZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02399___yknZ
# 2: BPUM_1333___yknZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1258
# Identity: 840/1258 (66.8%)
# Similarity: 840/1258 (66.8%)
# Gaps: 128/1258 (10.2%)
# Score: 2539.0
#
#
#=======================================
BSNT_02399___ 1 ATGAGCCTGTTAGAAAACATCAGAATGGCTCTAAGCTCTGTCCTTGCCCA 50
||||..||.||.|||||.||||.|||.||..|.|..|||||..|.||.||
BPUM_1333___y 1 ATGAAACTCTTTGAAAATATCAAAATAGCGATGAATTCTGTTTTAGCTCA 50
BSNT_02399___ 51 TAAAATGCGTTCGATCTTAACGATGCTCGGCATTATCATTGGTGTAGGCT 100
||||.|.|||||.||.|||||||||||.||.|||||.||||||||.||.|
BPUM_1333___y 51 TAAATTACGTTCTATTTTAACGATGCTTGGGATTATTATTGGTGTTGGAT 100
BSNT_02399___ 101 CTGTCATTGTTGTCGTTGCGGTAGGACAAGGAGGCGAGCAAATGCTGAAG 150
|.|||||||..||.||.||..|.||.|||||.||||||||||||||.||
BPUM_1333___y 101 CAGTCATTGCGGTTGTAGCTATCGGTCAAGGCGGCGAGCAAATGCTAAA- 149
BSNT_02399___ 151 CAG--TCGA--TCAGCGGCCCGGGAAATACTGTGGAGCTGTAC-TATATG 195
|| |||| ||| ||.||....|||||.||.||..|| || ||||.|
BPUM_1333___y 150 -AGGATCGATTTCA--GGTCCAAACAATACCGTTGATATG-ACGTATACG 195
BSNT_02399___ 196 CCTAGCGACGAGGAGCT---GGCAAGCAACCCGAACGCCGCAGCTGAATC 242
|||...|||||.|||.| .||| ||.||.||.|| .|.|.||
BPUM_1333___y 196 CCTTCTGACGAAGAGTTAAATGCA---AATCCTAATGC-----TTTATTC 237
BSNT_02399___ 243 TACG-----TTTACAGAAAACGATATT-AAAGGTTTAA---AAGGAATAG 283
.||| |||||.|||.|.||.||| ||||..|||| ||.||||
BPUM_1333___y 238 GACGCCACATTTACTGAAGAAGACATTAAAAGCATTAAGACAATGAAT-- 285
BSNT_02399___ 284 AAGGCATTAAACAAGTCGTTGCTTCGACTTCTGAAAGTATGAAAGC-GCG 332
||..|.||.||.||.|...||||||||.|..||.|.||| .||| |.|
BPUM_1333___y 286 --GGAGTGAATCAGGTTGCCTCTTCGACTGCGCAAGGAATG-CAGCTGAG 332
BSNT_02399___ 333 TTATCACGAAGAAGAAAC------CGATGCTACGGTTAACGGAATAAATG 376
.|.|| ||||.|| .|||||.||.||||||||.|||||||
BPUM_1333___y 333 ATTTC------AAGATACGACAGTGGATGCGACAGTTAACGGTATAAATG 376
BSNT_02399___ 377 ATGGATACATGAATGTCAATTCTTTAGAAATCGAAAGCGGCAGAACA--- 423
|.||.||.|.|||||||.||||.|||.|||| |||.|.||.|||
BPUM_1333___y 377 AAGGGTATACGAATGTCCATTCATTACAAAT----AGCAGAAGGACAGAA 422
BSNT_02399___ 424 -TTTACCGACAATGACTTT-----CTCGCGGGGAATAGAGCCGGAATCAT 467
||.|..||.|.||||||| | ||.|..|||||||...|.||
BPUM_1333___y 423 TTTAAAAGATATTGACTTTAGAAGC-----GGCAGAAGAGCCGCCCTGAT 467
BSNT_02399___ 468 CTCTCAAAAGATGGCT-----GAAGAACTGTTCGAT---AAAACCTCCCC 509
|||| ||.|||| .|||||.|.||..|| ||.|...||
BPUM_1333___y 468 CTCT-----GAAGGCTTACAAAAAGAATTATTTAATGGCAAGAAGGCC-- 510
BSNT_02399___ 510 TTTAGGTGAAGTTGTCTGGATAAACGGACAGCCCGTTGAAATTATCGGTG 559
||.||.|||.|..|.|||||.|||||||||||.||||||.|.|||||||
BPUM_1333___y 511 -TTGGGCGAAATGATTTGGATGAACGGACAGCCAGTTGAAGTCATCGGTG 559
BSNT_02399___ 560 TGCTGA---AAAAAGAAACAGGCTTGCTTTCTTTCGGTTTAAGTGAAATG 606
|.|| | |||.|||| |||..|||||||.||||.|.|.|.||||.|.
BPUM_1333___y 560 TTCT-AGCCAAACAGAA--AGGGATGCTTTCATTCGATATGAATGAAGTA 606
BSNT_02399___ 607 TATGTGCCATTTAATATGATGAAATCCTCTTTTGGCA-CAAGCGATTTCA 655
|||||.||||||...|||.|.|..|||.|.|||||.| ||| .||.|.|.
BPUM_1333___y 607 TATGTCCCATTTGCAATGCTTACCTCCACATTTGGGATCAA-TGAATACG 655
BSNT_02399___ 656 GTAACGTATCATTGCAGGTCGAATCA-GCAGACGACATAAAATCGGCAGG 704
.|||..|.|||.|.||.||||.| || ||.| ||.|||| |.|||
BPUM_1333___y 656 ATAAGTTGTCAATTCAAGTCGCA-CATGCTG-----ATCAAAT--GAAGG 697
BSNT_02399___ 705 AA------AAGAA----GCAGCACAGCTGGTAAATGACAATCATGGCACA 744
|| ||||| ||.||| .|..|||||||.||||||...|||
BPUM_1333___y 698 AAGTAGGGAAGAATGCGGCTGCA---TTATTAAATGAAAATCATCATACA 744
BSNT_02399___ 745 GAGGATTCGTATCAAGTGATGAACATGGAGGAGATTGCGGCCGGAATTGG 794
||.|||.|.|||.||.||||.||.|||||.||.||.||.|..||.||.||
BPUM_1333___y 745 GAAGATGCTTATGAAATGATCAATATGGAAGAAATCGCAGAAGGCATCGG 794
BSNT_02399___ 795 -CAAGGTAACGGCAATTATGACGACGATTATCGGCTCAATTGCAGGTATT 843
||| .|.|||.|..|||||||.||.||.||.||||||||.||.||.|||
BPUM_1333___y 795 TCAA-ATCACGTCCGTTATGACAACAATCATTGGCTCAATAGCTGGAATT 843
BSNT_02399___ 844 TCCCTTTTGGTCGGCGGAATCGGTGTCATGAATATCATGCTCGTATCAGT 893
||..|..|.||||||||.|||||.||.||||||||||||||.||.||.||
BPUM_1333___y 844 TCGTTACTTGTCGGCGGTATCGGAGTGATGAATATCATGCTTGTTTCTGT 893
BSNT_02399___ 894 CACAGAACGGACACGGGAAATTGGAATCAGAAAATCCCTCGGTGCGACGA 943
.|||||..|||||.|||||||.||.||..|||||.|..|.||.||.||||
BPUM_1333___y 894 GACAGAGAGGACAAGGGAAATCGGTATTCGAAAAGCAATTGGAGCAACGA 943
BSNT_02399___ 944 GGGGACAGATTCTGACTCAGTTTTTAATTGAGTCAGTCGTATTGACGCTG 993
|.|..||.||.||...|||.||||||||||||||.|||||.||.||..||
BPUM_1333___y 944 GAGCTCAAATACTCGTTCAATTTTTAATTGAGTCTGTCGTGTTAACCATG 993
BSNT_02399___ 994 ATTGGCGGTCTGGTCGGGATTGGCATT--GGATACGGAGGGGCCGGGCTT 1041
||.||.||..||.|.|||||| |||.| |.||| ||.||.|||..|.|.
BPUM_1333___y 994 ATCGGTGGGTTGATGGGGATT-GCACTAGGTATA-GGCGGTGCCTCGTTA 1041
BSNT_02399___ 1042 GTTTCAGCCATTGCGGGCTGGCCGTCACTCA-TATCCTGGCAGGT----T 1086
||.|||..||||||.||||||||||| ||.| ||||.|||||..| |
BPUM_1333___y 1042 GTATCACTCATTGCTGGCTGGCCGTC-CTTAGTATCTTGGCAAATCATCT 1090
BSNT_02399___ 1087 GTATGCGGGGGCGTGCTGTTCAGTATGCTCATTGGTGTTATTTTCGGCAT 1136
|||| .||.||||||||.||||||||.|||||..||.||||.||..|
BPUM_1333___y 1091 GTAT----AGGTGTGCTGTTTAGTATGCTAATTGGGATTGTTTTTGGGTT 1136
BSNT_02399___ 1137 GCTTCCTGCAAATAAAGCTGCAAAGCTTGATCCCATTGAAGCGCTGCGTT 1186
..|||||||.||||||||.||||..||.|||||.|||||..|.||..|.|
BPUM_1333___y 1137 AATTCCTGCGAATAAAGCAGCAAGACTAGATCCGATTGATTCTCTTAGAT 1186
BSNT_02399___ 1187 ATGAGTAG 1194
||||.||.
BPUM_1333___y 1187 ATGAATAA 1194
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