Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02397 and BPUM_1331
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_02397___yknX.1.24716.seq
# -bsequence dna-align/BPUM_1331___yknX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02397___yknX-BPUM_1331___yknX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02397___yknX-BPUM_1331___yknX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02397___yknX
# 2: BPUM_1331___yknX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1289
# Identity: 713/1289 (55.3%)
# Similarity: 713/1289 (55.3%)
# Gaps: 337/1289 (26.1%)
# Score: 1748.5
#
#
#=======================================
BSNT_02397___ 1 ATG---AAAAAAGTCTGGATCGGA---ATTGGAATCGCAGTTATAGTCGC 44
||| ||.|||.||...|||||| |||...||....|||| |||.
BPUM_1331___y 1 ATGAGAAAGAAAATCATCATCGGATCCATTTTTATTATTGTTA---TCGG 47
BSNT_02397___ 45 TCTTTTTGTTGG----------------AATCAAT-ATATACCGGTCTGC 77
|||.|||.|||| ||||||| |.| ||
BPUM_1331___y 48 TCTATTTATTGGCTTTAACATTGCAAAAAATCAATCAAA---------GC 88
BSNT_02397___ 78 C-GCTCCAACAAGCGGCAGCGCCGGCAAGGAGAT----ACAGACGGGGAG 122
| |||.||||| ||||| ||| ||||
BPUM_1331___y 89 CTGCTTCAACA----GCAGC-----------GATTAAAACAG-------- 115
BSNT_02397___ 123 CGTTGAA-------GAAAATGAAATCTCATCAACGGTTATGGTTCCTGGC 165
|.|| .||||.||||||.|..|.|.|||.|||...||.|||
BPUM_1331___y 116 ---TAAAACCCATGCAAAAAGAAATCACCACTAAGGTCATGACGCCGGGC 162
BSNT_02397___ 166 ACGCTAAAATTTTCAAATGAACAGTATGTCTTTTAT---GAAGCGGATAA 212
||.||...|||.|| ||||.||.|..|..||||| ||||.||| .|
BPUM_1331___y 163 ACACTTTCATTCTC---TGAAGAGCAATTTATTTATGCAGAAGAGGA-CA 208
BSNT_02397___ 213 AGGGACATTAGAA-GACATTAAAGTTAAGGAAGGCGATAAAGTTAAAAAG 261
|||||||||.||| |..|||...||.||.|||||.||.||.|| ||||
BPUM_1331___y 209 AGGGACATTTGAAGGGGATTTCTGTAAAAGAAGGAGAAAAGGT---AAAG 255
BSNT_02397___ 262 ---GGCACGCCTTTAGTCACCTATACAAAT-GAGCAGC-TGAGCCTGGAA 306
||.|||||..|..|.||.|||..|||| ||| ||| |||| ||.|||
BPUM_1331___y 256 CCTGGGACGCCGCTTCTTACATATGAAAATAGAG-AGCTTGAG-CTTGAA 303
BSNT_02397___ 307 AAAGAACAG-AACCAGTTAACGTCTGAATCCA--ACCGGCTTCAAA-TTG 352
.||||.||| ||.|..|| .||.|||||||.| || .||.||| ..|
BPUM_1331___y 304 GAAGAGCAGCAAGCTCTT-GCGGCTGAATCTAGTAC---GTTAAAACGCG 349
BSNT_02397___ 353 ACCAAATTCAAGAAAAG-TTAAAAGCCTTAGACAGCAAAGAAAGAGAACT 401
|.|||.|.||| ||.|| ||.|..|..|||||||
BPUM_1331___y 350 AACAATTACAA-AATAGATTGAGCGAATTAGACA---------------- 382
BSNT_02397___ 402 GGAAAAACAGGTAGGAAAGAAAGAAGCAG-----------AAAAA----- 435
|||||||.|.||| .|||.|.| |||||
BPUM_1331___y 383 --AAAAACAAGAAGG------CGAATCCGCCACCAATCCTAAAAATGAGC 424
BSNT_02397___ 436 -----CAAATCGAATCTGAACGGACAG-AGCTTCAAATGCAGAA-AAAAA 478
||..|.||.|..||||.||.|| |||| .||| .|||| |||||
BPUM_1331___y 425 GAGACCAGCTTGAGTTAGAACTGAAAGCAGCT--GAAT-TAGAACAAAAA 471
BSNT_02397___ 479 C-AGCGGAGATC---------GAATTAAA---ACAAACCGAGCTTCAGCG 515
| |||.|||||| .||.|||| |||||..||
BPUM_1331___y 472 CAAGCAGAGATCAGCCAAGAAAAAGTAAAAGCACAAATAGA--------- 512
BSNT_02397___ 516 GCAGTCACTTGCCAACCGGGTGTCAGATTTAGAAGTGAAAAGCGAAATTG 565
|||||||...||..|.||..||||||
BPUM_1331___y 513 ------------------------AGATTTAACCGTACATAGTAAAATTG 538
BSNT_02397___ 566 AAGGCACCGTTATTTC---TGTCAAC--CAAGAAGCGGCATCCAAAAAGT 610
|.||.||.||.||||| || ||| .||||||.|||| ..||||.
BPUM_1331___y 539 ACGGTACAGTGATTTCCATTG--AACAAGAAGAAGGGGCA---GGAAAGC 583
BSNT_02397___ 611 C---AGATATTCAAG--AGCCTGTCATACATATCGGCAAC-----CCAAA 650
| ||| ||| ||||..|.||.|||||.|||||| ..|||
BPUM_1331___y 584 CGGAAGA-----AAGGCAGCCGATTATTCATATTGGCAACGAGAAAAAAA 628
BSNT_02397___ 651 AGACCTTGT-CGTCTCAGGGAAATTG---TCTGAATACGATACATTGAAA 696
.|| |||| || ||| |||| |||||.||.||..|..|.|||
BPUM_1331___y 629 TGA--TTGTGCG----AGG---ATTGATTTCTGAGTATGACGCCATAAAA 669
BSNT_02397___ 697 GTCAAAAAAGGCCAGAAGGTCACACTCACTTCAGATGTAATACAGGGTAA 746
||.|||||....||.||.||.|...||||.||.|||||.||.|..||.||
BPUM_1331___y 670 GTGAAAAAGAAACAAAAAGTAAAGATCACGTCTGATGTCATTCGCGGAAA 719
BSNT_02397___ 747 AACATGGAAAGGCACGGTTTCCGCAGTC------------GGGCTTGTTC 784
.|..|||.|||| |||| |||..|||.|
BPUM_1331___y 720 GAGTTGGCAAGG------------AGTCGTGAAAAAAGTAGGGGGTGTAC 757
BSNT_02397___ 785 CGGATCAGCAGGAGAGCGCTGCGGCACAAGGAACA---------GAACAG 825
|.|.|||| ||.|||...|.|||| ||.||.
BPUM_1331___y 758 CTGCTCAG------------GCAGCATCTGAAACAACTGCAGGTGATCAA 795
BSNT_02397___ 826 GCGGTCCAATACCCGCTTCAAGTGAAAATAAAAGGAAATCTTCCAGAAGG 875
.||||.|||||.||..||.||.|..|||||||.|||||....||.||||.
BPUM_1331___y 796 ACGGTGCAATATCCAGTTGAAATCGAAATAAAGGGAAAAAAACCTGAAGC 845
BSNT_02397___ 876 AAAGCCAGGCTTTAAATTTATCATGAATATTGAAACAGATAAACGGAAAG 925
|||.||.||.||||||.|.||||||.|.||||||||||||||.||..|||
BPUM_1331___y 846 AAAACCTGGTTTTAAAATGATCATGGAAATTGAAACAGATAAGCGTCAAG 895
BSNT_02397___ 926 CAAATACGCTTCC---TTCAAAGGCAGTCAAAAAAGAAGATGA---CCAA 969
|....|||.|||| .||| ||.||.||||||||.||||| .|||
BPUM_1331___y 896 CCCTAACGATTCCCGAATCA---GCTGTAAAAAAAGAGGATGATGGGCAA 942
BSNT_02397___ 970 TATTATGTGTATACAGT--AAAAGACGG--------AAAAGCAAAG-CGA 1008
||.||.||||..|| ||||||..| ||||..|||| .||
BPUM_1331___y 943 ---TACGTTTATATTGTCAAAAAGAATGTACTTAAAAAAATAAAAGTGGA 989
BSNT_02397___ 1009 GTTAATGTCAAAATCGGCGAAGTGACAG---ATGACC------TGACAGA 1049
|.|| ||.|||..|.||| |.|||| |||||
BPUM_1331___y 990 GCTA-----------GGGGAAACGTCAGGTAAAGACCTTGAAGTGACA-- 1026
BSNT_02397___ 1050 AATTAAAGAGGGGCTTACCCAAGATGATCAAGTCATTT-TGAATCCATCT 1098
|||| |.|.|.||.| .||.||||||.|||||| |.|| |||||.
BPUM_1331___y 1027 ----AAAG-GTGTCGTAGC--TGAGGATCAAATCATTTCTCAA-CCATCA 1068
BSNT_02397___ 1099 GATCAGGTGACTGACGGAATGGAAGTGAAATCTTAA--- 1134
|||.|..||..||||||||||||||||||..||.||
BPUM_1331___y 1069 GATGACATGTATGACGGAATGGAAGTGAATGCTGAATGA 1107
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