Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02397 and BPUM_1331

See Amino acid alignment / Visit BSNT_02397 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_02397___yknX.1.24716.seq
#    -bsequence dna-align/BPUM_1331___yknX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02397___yknX-BPUM_1331___yknX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02397___yknX-BPUM_1331___yknX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02397___yknX
# 2: BPUM_1331___yknX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1289
# Identity:     713/1289 (55.3%)
# Similarity:   713/1289 (55.3%)
# Gaps:         337/1289 (26.1%)
# Score: 1748.5
# 
#
#=======================================

BSNT_02397___      1 ATG---AAAAAAGTCTGGATCGGA---ATTGGAATCGCAGTTATAGTCGC     44
                     |||   ||.|||.||...||||||   |||...||....||||   |||.
BPUM_1331___y      1 ATGAGAAAGAAAATCATCATCGGATCCATTTTTATTATTGTTA---TCGG     47

BSNT_02397___     45 TCTTTTTGTTGG----------------AATCAAT-ATATACCGGTCTGC     77
                     |||.|||.||||                ||||||| |.|         ||
BPUM_1331___y     48 TCTATTTATTGGCTTTAACATTGCAAAAAATCAATCAAA---------GC     88

BSNT_02397___     78 C-GCTCCAACAAGCGGCAGCGCCGGCAAGGAGAT----ACAGACGGGGAG    122
                     | |||.|||||    |||||           |||    ||||        
BPUM_1331___y     89 CTGCTTCAACA----GCAGC-----------GATTAAAACAG--------    115

BSNT_02397___    123 CGTTGAA-------GAAAATGAAATCTCATCAACGGTTATGGTTCCTGGC    165
                        |.||       .||||.||||||.|..|.|.|||.|||...||.|||
BPUM_1331___y    116 ---TAAAACCCATGCAAAAAGAAATCACCACTAAGGTCATGACGCCGGGC    162

BSNT_02397___    166 ACGCTAAAATTTTCAAATGAACAGTATGTCTTTTAT---GAAGCGGATAA    212
                     ||.||...|||.||   ||||.||.|..|..|||||   ||||.||| .|
BPUM_1331___y    163 ACACTTTCATTCTC---TGAAGAGCAATTTATTTATGCAGAAGAGGA-CA    208

BSNT_02397___    213 AGGGACATTAGAA-GACATTAAAGTTAAGGAAGGCGATAAAGTTAAAAAG    261
                     |||||||||.||| |..|||...||.||.|||||.||.||.||   ||||
BPUM_1331___y    209 AGGGACATTTGAAGGGGATTTCTGTAAAAGAAGGAGAAAAGGT---AAAG    255

BSNT_02397___    262 ---GGCACGCCTTTAGTCACCTATACAAAT-GAGCAGC-TGAGCCTGGAA    306
                        ||.|||||..|..|.||.|||..|||| ||| ||| |||| ||.|||
BPUM_1331___y    256 CCTGGGACGCCGCTTCTTACATATGAAAATAGAG-AGCTTGAG-CTTGAA    303

BSNT_02397___    307 AAAGAACAG-AACCAGTTAACGTCTGAATCCA--ACCGGCTTCAAA-TTG    352
                     .||||.||| ||.|..|| .||.|||||||.|  ||   .||.||| ..|
BPUM_1331___y    304 GAAGAGCAGCAAGCTCTT-GCGGCTGAATCTAGTAC---GTTAAAACGCG    349

BSNT_02397___    353 ACCAAATTCAAGAAAAG-TTAAAAGCCTTAGACAGCAAAGAAAGAGAACT    401
                     |.|||.|.||| ||.|| ||.|..|..|||||||                
BPUM_1331___y    350 AACAATTACAA-AATAGATTGAGCGAATTAGACA----------------    382

BSNT_02397___    402 GGAAAAACAGGTAGGAAAGAAAGAAGCAG-----------AAAAA-----    435
                       |||||||.|.|||      .|||.|.|           |||||     
BPUM_1331___y    383 --AAAAACAAGAAGG------CGAATCCGCCACCAATCCTAAAAATGAGC    424

BSNT_02397___    436 -----CAAATCGAATCTGAACGGACAG-AGCTTCAAATGCAGAA-AAAAA    478
                          ||..|.||.|..||||.||.|| ||||  .||| .|||| |||||
BPUM_1331___y    425 GAGACCAGCTTGAGTTAGAACTGAAAGCAGCT--GAAT-TAGAACAAAAA    471

BSNT_02397___    479 C-AGCGGAGATC---------GAATTAAA---ACAAACCGAGCTTCAGCG    515
                     | |||.||||||         .||.||||   |||||..||         
BPUM_1331___y    472 CAAGCAGAGATCAGCCAAGAAAAAGTAAAAGCACAAATAGA---------    512

BSNT_02397___    516 GCAGTCACTTGCCAACCGGGTGTCAGATTTAGAAGTGAAAAGCGAAATTG    565
                                             |||||||...||..|.||..||||||
BPUM_1331___y    513 ------------------------AGATTTAACCGTACATAGTAAAATTG    538

BSNT_02397___    566 AAGGCACCGTTATTTC---TGTCAAC--CAAGAAGCGGCATCCAAAAAGT    610
                     |.||.||.||.|||||   ||  |||  .||||||.||||   ..||||.
BPUM_1331___y    539 ACGGTACAGTGATTTCCATTG--AACAAGAAGAAGGGGCA---GGAAAGC    583

BSNT_02397___    611 C---AGATATTCAAG--AGCCTGTCATACATATCGGCAAC-----CCAAA    650
                     |   |||     |||  ||||..|.||.|||||.||||||     ..|||
BPUM_1331___y    584 CGGAAGA-----AAGGCAGCCGATTATTCATATTGGCAACGAGAAAAAAA    628

BSNT_02397___    651 AGACCTTGT-CGTCTCAGGGAAATTG---TCTGAATACGATACATTGAAA    696
                     .||  |||| ||    |||   ||||   |||||.||.||..|..|.|||
BPUM_1331___y    629 TGA--TTGTGCG----AGG---ATTGATTTCTGAGTATGACGCCATAAAA    669

BSNT_02397___    697 GTCAAAAAAGGCCAGAAGGTCACACTCACTTCAGATGTAATACAGGGTAA    746
                     ||.|||||....||.||.||.|...||||.||.|||||.||.|..||.||
BPUM_1331___y    670 GTGAAAAAGAAACAAAAAGTAAAGATCACGTCTGATGTCATTCGCGGAAA    719

BSNT_02397___    747 AACATGGAAAGGCACGGTTTCCGCAGTC------------GGGCTTGTTC    784
                     .|..|||.||||            ||||            |||..|||.|
BPUM_1331___y    720 GAGTTGGCAAGG------------AGTCGTGAAAAAAGTAGGGGGTGTAC    757

BSNT_02397___    785 CGGATCAGCAGGAGAGCGCTGCGGCACAAGGAACA---------GAACAG    825
                     |.|.||||            ||.|||...|.||||         ||.||.
BPUM_1331___y    758 CTGCTCAG------------GCAGCATCTGAAACAACTGCAGGTGATCAA    795

BSNT_02397___    826 GCGGTCCAATACCCGCTTCAAGTGAAAATAAAAGGAAATCTTCCAGAAGG    875
                     .||||.|||||.||..||.||.|..|||||||.|||||....||.||||.
BPUM_1331___y    796 ACGGTGCAATATCCAGTTGAAATCGAAATAAAGGGAAAAAAACCTGAAGC    845

BSNT_02397___    876 AAAGCCAGGCTTTAAATTTATCATGAATATTGAAACAGATAAACGGAAAG    925
                     |||.||.||.||||||.|.||||||.|.||||||||||||||.||..|||
BPUM_1331___y    846 AAAACCTGGTTTTAAAATGATCATGGAAATTGAAACAGATAAGCGTCAAG    895

BSNT_02397___    926 CAAATACGCTTCC---TTCAAAGGCAGTCAAAAAAGAAGATGA---CCAA    969
                     |....|||.||||   .|||   ||.||.||||||||.|||||   .|||
BPUM_1331___y    896 CCCTAACGATTCCCGAATCA---GCTGTAAAAAAAGAGGATGATGGGCAA    942

BSNT_02397___    970 TATTATGTGTATACAGT--AAAAGACGG--------AAAAGCAAAG-CGA   1008
                        ||.||.||||..||  ||||||..|        ||||..|||| .||
BPUM_1331___y    943 ---TACGTTTATATTGTCAAAAAGAATGTACTTAAAAAAATAAAAGTGGA    989

BSNT_02397___   1009 GTTAATGTCAAAATCGGCGAAGTGACAG---ATGACC------TGACAGA   1049
                     |.||           ||.|||..|.|||   |.||||      |||||  
BPUM_1331___y    990 GCTA-----------GGGGAAACGTCAGGTAAAGACCTTGAAGTGACA--   1026

BSNT_02397___   1050 AATTAAAGAGGGGCTTACCCAAGATGATCAAGTCATTT-TGAATCCATCT   1098
                         |||| |.|.|.||.|  .||.||||||.|||||| |.|| |||||.
BPUM_1331___y   1027 ----AAAG-GTGTCGTAGC--TGAGGATCAAATCATTTCTCAA-CCATCA   1068

BSNT_02397___   1099 GATCAGGTGACTGACGGAATGGAAGTGAAATCTTAA---   1134
                     |||.|..||..||||||||||||||||||..||.||   
BPUM_1331___y   1069 GATGACATGTATGACGGAATGGAAGTGAATGCTGAATGA   1107


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.