Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02396 and BPUM_1330
See
Amino acid alignment /
Visit
BSNT_02396 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_02396___yknW.1.24716.seq
# -bsequence dna-align/BPUM_1330___yknW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02396___yknW-BPUM_1330___yknW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02396___yknW-BPUM_1330___yknW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02396___yknW
# 2: BPUM_1330___yknW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 832
# Identity: 383/832 (46.0%)
# Similarity: 383/832 (46.0%)
# Gaps: 341/832 (41.0%)
# Score: 624.5
#
#
#=======================================
BSNT_02396___ 1 ATGGAAACGAATGTAGAAAAAAACAGCGGAACGGCGACTG---AAAAGCC 47
|.||| |||||| || |||||||
BPUM_1330___y 1 ------ATGAA---AGAAAA------------------TGTGCAAAAGCC 23
BSNT_02396___ 48 T----TCACTTTTCGGAGTAATCACAAGTCCGTCCGTTCAATTTGAAAGA 93
| ||| |.||.||.|..|||||.||.||.|..||..|..|||||
BPUM_1330___y 24 TACGATCA----TTGGGGTGAGTACAAGACCTTCTGAGCACCTGAAAAGA 69
BSNT_02396___ 94 ATAAGAGAAAGGCCGGCTGTATGGGGACCGCTTTTGA-TTGT-TGCAGCA 141
.||.|.||.|..||||..||.|||.| ||.|||.| |||| |.|..|.
BPUM_1330___y 70 GTATGGGAGAATCCGGTGGTTTGGTG---GCCTTTAACTTGTGTCCTTCT 116
BSNT_02396___ 142 ATTATCATCGTCGGTGCCGTGCTGCAATCACTCGGTACGGATTATAGTGA 191
.|||.|| ||| ||.||||
BPUM_1330___y 117 TTTAACA-----------GTG----------------------ATTGTGA 133
BSNT_02396___ 192 GCT--TTTGAAAAGCCAGGATACGCAAGGGCTATCTGCTGAACAAATGGA 239
|| ||| |.||| |.|||.||||..|| |||
BPUM_1330___y 134 -CTTATTT-----GTCAG--------------AGCTGGTGAATGAA-GGA 162
BSNT_02396___ 240 AACTGTCGCAACAATAACCAAATTTGGCGGAA--TGGCAGGCGCTATTAT 287
| |||.| .||.|||| || |.||.|| |||
BPUM_1330___y 163 A--TGTGG---------GCAGATTT-----AAGCTTGCCGG------TAT 190
BSNT_02396___ 288 CGGCGGTATCGCAGCATTATTTAT----TGCCCCTCTTATTTATTGG--- 330
||| ||| ||||| ||.|.||| |||||
BPUM_1330___y 191 CGG-----TCG--------TTTATGTGGTGACGCTC------ATTGGTCT 221
BSNT_02396___ 331 ----CTC-----TGTG--TA-------AAAATATCAG----GCGGAGTTA 358
||| |||| || ||.||||.|| .||.|.|
BPUM_1330___y 222 CCTTCTCGGGCTTGTGGTTAATGCTGCAATATATAAGCTCATCGTATT-- 269
BSNT_02396___ 359 CGACATATAAAAAA-----ATGCTTTCTCTCGG--TCTGTTT------GT 395
|.||..||| ||||.|..|.||.| .|||||| ||
BPUM_1330___y 270 -----TTTAGCAAAGGGTGATGCATCGTTTCAGCAGCTGTTTTCAGCGGT 314
BSNT_02396___ 396 CTCT-TTAATT--AGCAGTCTCG-----------GATTATT-------GG 424
| || ||.||| |.||||..|| ||||||| .|
BPUM_1330___y 315 C-CTGTTTATTACACCAGTTACGATCGTTGGGACGATTATTTCTCATCTG 363
BSNT_02396___ 425 TTAATGGAATC-GTTGCTTTTAC-----GACTGACGTGAAT--CCTCTTT 466
|..|| .|.|| |||.|.|.||| .|| ||...||| ||||.||
BPUM_1330___y 364 TCCAT-CATTCTGTTCCATGTACCAAAAAAC--ACCACAATCACCTCATT 410
BSNT_02396___ 467 ACA-GCAC-------GACGTCACTGG--CAGGGATTATCCCATCTGACGG 506
|.| |||| .|||| |||| ||.|| |||
BPUM_1330___y 411 AAATGCACTCATTCAAACGT--CTGGTCCATGG-------CAT------- 444
BSNT_02396___ 507 GGCT---CTTGCCAGCGTGTTAAATACCTTTGAAATTTTCAG-CATCTGG 552
||| ||||||| |.|||..|.| |||| | .||||||
BPUM_1330___y 445 -GCTGTGCTTGCCA-------ATATAGATCT---ATTT---GTGATCTGG 480
BSNT_02396___ 553 A---------------GCTTTGTATT-ATTAGCAA-TCGGACTTCACAAA 585
| |||||.|||| || |.|| |.|| |||.|
BPUM_1330___y 481 AATCTTGTTTTAACAGGCTTTTTATTGAT--GAAAGTTGG---TCATA-- 523
BSNT_02396___ 586 ACGGGAGGCATCTCCAA-AAAAGCCGGGTGGATTTCAGCAATCATTCTAT 634
.|||.|||| ||.|.|..||...|||..||.|.|| ||.|||
BPUM_1330___y 524 --------TATCGCCAAGAATAACTTGGACTATTATAGGAGTC-TTTTAT 564
BSNT_02396___ 635 -TCGGAATTTTAGTTGTATTTTCGCTTTTTTC-------AGG---TTTAA 673
|| ||| |.||| |.|||||| ||| |..||
BPUM_1330___y 565 CTC------TTA--TCTAT-----CATTTTTCAATATGTAGGAACTGCAA 601
BSNT_02396___ 674 TCA--AT-TCTG-----TGGCGGGT-GCATAA 696
||| || ||.| ||| |||| |
BPUM_1330___y 602 TCACCATATCAGTAAGCTGG-GGGTAG----- 627
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.