Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02380 and BPUM_1322
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_02380___yknT.1.24716.seq
# -bsequence dna-align/BPUM_1322___yknT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02380___yknT-BPUM_1322___yknT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02380___yknT-BPUM_1322___yknT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02380___yknT
# 2: BPUM_1322___yknT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1169
# Identity: 558/1169 (47.7%)
# Similarity: 558/1169 (47.7%)
# Gaps: 454/1169 (38.8%)
# Score: 1275.0
#
#
#=======================================
BSNT_02380___ 1 ATGAAAAGATCAGG-----------TCCTTTTTTCCACGACGTGTCTCAG 39
||||| |||| |||..|.|||||.||..|.|||||.
BPUM_1322___y 1 ATGAA-----CAGGCGTCCTGCTTCTCCCCTATTCCATGATCTATCTCAA 45
BSNT_02380___ 40 GAGAACCTTTATTTAAAATCCG----AGC----TTTCAAGGTGCCATAAG 81
|||||..|.||.||||||.|.| ||| |.|||| ||.|
BPUM_1322___y 46 GAGAATTTGTACTTAAAAGCGGAAGCAGCAAAATATCAA-----CAAA-- 88
BSNT_02380___ 82 CTGATTGCTGAACTTGAAGCAAGCTACTTTCATCA-----------GAAA 120
||||..|||| || |||..||.||| .|||
BPUM_1322___y 89 -TGATCTCTGA--TT---------TACAGTCCTCATATACGTATTCTAAA 126
BSNT_02380___ 121 AATAACA----AACTGCTCAAAGAAAATACCGATATGAAAGAAAAACTCC 166
|||||.| |||| .|||||.||...||.|||||| ||..|.|.|
BPUM_1322___y 127 AATAAGAAGTTAACT----CAAGAATATCATGAGATGAAA-AAGGATTAC 171
BSNT_02380___ 167 AGCAGCTGTCTGCCG-AATTAACACATATGTCAACAA----AAGAAA--- 208
| || |||||| ..|||||| |.||||
BPUM_1322___y 172 A------------CGCAATTAA-------AGCAACAATTGGATGAAATGA 202
BSNT_02380___ 209 ------------AACAT---GCCTCCCACACCAGCCAAA----------- 232
|.||| |||| ||||
BPUM_1322___y 203 CCATTGATCAAGATCATACGGCCT-----------CAAAAATACAGGATC 241
BSNT_02380___ 233 --CCCTGCACCAAATAAGAGCTGAACTGCTTGATAAAATCGTTGTTTTGC 280
.|||.||.||||| |||||.||.|..|||||||.||..|
BPUM_1322___y 242 TTTCCTACAGCAAAT-----CTGAATTGTTACATAAAATAGTCCT----- 281
BSNT_02380___ 281 AGGAGCTTCTAT---CTGCT-------GAAACCTTTAAACGCAGAGCCGA 320
||||| || .|||| |||||||||.|..|.||....||
BPUM_1322___y 282 ----GCTTC-ATGAAATGCTCCAAAAAGAAACCTTTCATAGAAGGAAAGA 326
BSNT_02380___ 321 AATCGAAGAAAAACATAAACTTCATATTGC----GAAAGTCA--AAATCG 364
||..||||||||||| |..||||| .||||||| ||||
BPUM_1322___y 327 AACGGAAGAAAAACA-------CCGATTGCATTTAAAAGTCATTAAAT-- 367
BSNT_02380___ 365 AAGAAGAAAAT-----AAAAATCTTCATAAACGGATCAGCGAACTTCAAG 409
|.|||.|||| ||.||| |..||.|||||||
BPUM_1322___y 368 -ATAAGGAAATCTCTCAACAAT-TAAATGAACGGAT-------------- 401
BSNT_02380___ 410 CCTCGATTGAGCAGGAACAAAATGCACTGCTTCAGGCAAAACAGCAAGCC 459
||||||.|||.||..||.|||| ||||||.||.|
BPUM_1322___y 402 ----------GCAGGATCAAGATAAACGGCTT---GCAAAAGAGGA---- 434
BSNT_02380___ 460 GAATTGATAAAAGCCGAAA-ACGGGCGTCTA---------------AAA- 492
||.||||| |||| || |.|| |||
BPUM_1322___y 435 -----GAAAAAAG--GAAATAC-----TTTATCCGCTGTGATTGAGAAAC 472
BSNT_02380___ 493 --AAGCAAA-------TGGTAGAAAA---AGAATATCAGCTAAAACATAT 530
.|||||| ||.|| |||| |||...|||.|||..|||
BPUM_1322___y 473 TGCAGCAAACATTAAGTGATA-AAAACGCAGAGCTTCATCTATTACA--- 518
BSNT_02380___ 531 TAAAATAGAA---GTTGATCATATGAAAGATCGAATCATA-GAAACGAAA 576
|||| |||.|.||..||.|.||.|| .|..|| |||||..||
BPUM_1322___y 519 ------AGAAGGCGTTAAACACCTGCAGGAGCG-TTTTTATGAAACACAA 561
BSNT_02380___ 577 GAAAGACTGCTAGACATAGAAAAAACGAAAGAAA--AATTATTTCACGAA 624
||.|.|.|.||..|.||.||||||.| ||||.|| .||| |||.|.|||
BPUM_1322___y 562 GAGAAATTACTGCAAATCGAAAAAGC-AAAGGAAGCGATT-TTTTATGAA 609
BSNT_02380___ 625 ACTATTAT-ATCGTATAAACGGCAGCTTGATGAAAGCGATGCCTGGATTG 673
||..|.|| |.| |||.||..||||.|.|..||||||||.|..|||||.|
BPUM_1322___y 610 ACGCTCATCAGC-TATCAAAAGCAGTTAGCCGAAAGCGAGGAATGGATCG 658
BSNT_02380___ 674 CTTCTCATTTTGCCGATATTGA---------------------------- 695
|.|||||||||||.||||||||
BPUM_1322___y 659 CATCTCATTTTGCTGATATTGACCAGTCAGCCCAAACAAATTCACAGCCA 708
BSNT_02380___ 696 ---TGGCG------------GC-----ACGAAACAAA---AA-------- 714
|.||| || |||.||.||| ||
BPUM_1322___y 709 TTCTCGCGAGAAACCCTCCTGCAAACAACGGAAGAAATCGAACCTATCTT 758
BSNT_02380___ 715 GAAAAAACGGAA-GAAGAAGCTCCAGCGGTCTACGC-------------- 749
||||||||.||| |||.|||.||.|.||.||.|.||
BPUM_1322___y 759 GAAAAAACTGAACGAACAAGTTCAAACGCTCCAAGCACAAGTTGATGCGG 808
BSNT_02380___ 750 -GCAGCCAAATCATGTAGAGACTATCCTTGAAGATGTCACCAAACAGATA 798
|||||.|| |||.|||| ||| |||.||...| ||||.
BPUM_1322___y 809 TGCAGCAAA---ATGGAGAG---ATC-------ATGACAGTGA--AGATT 843
BSNT_02380___ 799 CATGTGCTTC-AAAAACAGCTTGCCCGCGCCCAATCATCAGACCAGGCCA 847
.||| ||||| |||||||||.|| |.|||| .||||
BPUM_1322___y 844 GATG-GCTTCAAAAAACAGCGTG----------ACCATC------TGCCA 876
BSNT_02380___ 848 AGAGCCATACAATCGAAGAGCTGAAAAACAGAGCCGCTGAAGAAAAGCCT 897
| |..||| |||||| |
BPUM_1322___y 877 A----------------------AGGAAC---------GAAGAA-----T 890
BSNT_02380___ 898 TATCAAAAGTGGGTGTATAAGCTTAATCTTGAAAAAGAAAACAAACCTTC 947
| ||.||||.|.||.||| ..||||||.||
BPUM_1322___y 891 T-----------GTCTATACGGTTGATC-AAAAAAAGTAA---------- 918
BSNT_02380___ 948 ACAGAAAAAACCTCAATAA 966
BPUM_1322___y 918 ------------------- 918
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