Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02376 and BPUM_1321

See Amino acid alignment / Visit BSNT_02376 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_02376___rok.1.24716.seq
#    -bsequence dna-align/BPUM_1321___rok.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02376___rok-BPUM_1321___rok.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02376___rok-BPUM_1321___rok.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02376___rok
# 2: BPUM_1321___rok
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 603
# Identity:     443/603 (73.5%)
# Similarity:   443/603 (73.5%)
# Gaps:          48/603 ( 8.0%)
# Score: 1648.0
# 
#
#=======================================

BSNT_02376___      1 ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGA     50
                     .||||||||||.||.|||||.||.||.||.||.||.|||||||||||.||
BPUM_1321___r      1 TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGA     50

BSNT_02376___     51 AGCTGAAGTGAAAGTCATTCGTGAATATCAAATTGAACGTGATAAAATAT    100
                     .||.|||||.||.|||||.|||||||||||||||||.||.|||...||.|
BPUM_1321___r     51 GGCAGAAGTAAAGGTCATCCGTGAATATCAAATTGAGCGAGATGCGATTT    100

BSNT_02376___    101 ACGCAAAATTAAGAGAGCTGGACAGAAATGGA--AGCCCT----TCCGAA    144
                     |.||||||||||||||..|.|||.|..|.|||  ||..||    ||.||.
BPUM_1321___r    101 ATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGAT    150

BSNT_02376___    145 ATCAAAAAGGATTTCCGTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCT    194
                     |..|||||.||..|.|||.|.||||.||||.|.||.||.|||||.||..|
BPUM_1321___r    151 ACAAAAAAAGAAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATT    200

BSNT_02376___    195 CGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCG------CAAT    238
                     .||||||||.||.||.||||||||.|||||.||.||||||      ||||
BPUM_1321___r    201 AGCTGAGCTGGCTGCACAGGAAATGAGAAGTTACCAGCCGCCTGCACAAT    250

BSNT_02376___    239 CACAGCAGCAGTCT-GTTCAGCCTCAGCTTCA----------ATCTA---    274
                     ||      ||.||| .|||.||.|||.|||.|          |.|||   
BPUM_1321___r    251 CA------CAATCTAATTCTGCATCATCTTTAGGAACAGGGCAGCTAAAC    294

BSNT_02376___    275 -TTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAGAAG    323
                      .|.|      .||||..|||||.||.||.|||.|.|||.||.|.|||||
BPUM_1321___r    295 GGTGC------ACCTGTAGGTATTCCTGAAGGATCTACAAGACGTAGAAG    338

BSNT_02376___    324 AGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTA    373
                     |||.||.||..|.||.||.|||||.||||||||.||.|||||||||||.|
BPUM_1321___r    339 AGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAACTTCGTGAAGCTGCAA    388

BSNT_02376___    374 TTAAAACATTAAAACGCCACAACGCGGCGATTAAGAGCTCGGAGCTTCAA    423
                     |||||||.|||||.||.||.||.|||||||||||.|||||.||.||||||
BPUM_1321___r    389 TTAAAACGTTAAAGCGTCATAATGCGGCGATTAAAAGCTCTGAACTTCAA    438

BSNT_02376___    424 AAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATT    473
                     |||||.|||||||||||.||||||||||||||.||.|||||||||||.||
BPUM_1321___r    439 AAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATGACAACGTT    488

BSNT_02376___    474 TATGCAAAGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCG    523
                     ||||||||||||||||||||||||.||.||||||||||||||||||||||
BPUM_1321___r    489 TATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCG    538

BSNT_02376___    524 GGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGAATCAGCAAATGAA    573
                     |.|||||.|||.||||.||.||.||    ||     ||.|||.|.|.|||
BPUM_1321___r    539 GACAGTATATTCTAGAAGGCGATAT----TC-----AAACAGAAGACGAA    579

BSNT_02376___    574 TAA    576
                     |||
BPUM_1321___r    580 TAA    582


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