Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02374 and BPUM_1320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_02374___ykuV.1.24716.seq
# -bsequence dna-align/BPUM_1320___ykuV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02374___ykuV-BPUM_1320___ykuV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02374___ykuV-BPUM_1320___ykuV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02374___ykuV
# 2: BPUM_1320___ykuV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 467
# Identity: 353/467 (75.6%)
# Similarity: 353/467 (75.6%)
# Gaps: 28/467 ( 6.0%)
# Score: 1293.0
#
#
#=======================================
BSNT_02374___ 1 ATGAAATTACGTCAGCCCATGCCGGAATTGACGGGAGAAAAAGCTTGGTT 50
||||||||||||||.||.|||||.|||.|.||.||.|.|||||..|||||
BPUM_1320___y 1 ATGAAATTACGTCAACCAATGCCAGAACTAACTGGTGCAAAAGAATGGTT 50
BSNT_02374___ 51 AAATGGTGAAGTGACGAGAGAGCAATTGATTGGGGAAAAGCCGACGCTTA 100
||||||.|||||.||.|.|||..|..|.|||||.||.||.||.||..|.|
BPUM_1320___y 51 AAATGGAGAAGTAACAAAAGAAGATCTAATTGGTGAGAAACCAACATTGA 100
BSNT_02374___ 101 TTCATTTCTGGTCCATCAGCTGCCA-CTTGTGCAAAGAAGCGATGCCGCA 149
|||||||||||||..|||||||.|| ||| ||.|||||.||.|||||.||
BPUM_1320___y 101 TTCATTTCTGGTCAGTCAGCTGTCATCTT-TGTAAAGAGGCAATGCCTCA 149
BSNT_02374___ 150 AGTGAATGAATTTCGTGATAAATATCAA-GATCAGCTGAATGTTGTAGCT 198
|||.|||.||||.||||||.|||| ||| |||||..|.||.||..||||.
BPUM_1320___y 150 AGTCAATCAATTCCGTGATGAATA-CAAGGATCAATTAAACGTGATAGCC 198
BSNT_02374___ 199 GTACACATGCCCCGTTCCGAAGATGATCTT-GACCTTGGTAAAATTAAAG 247
||.||.|||||.||.||.||.||||| ||| ||.||.|.|||.||.||.|
BPUM_1320___y 199 GTTCATATGCCGCGATCAGAGGATGA-CTTAGATCTGGATAAGATCAAGG 247
BSNT_02374___ 248 AAACAGCTGC---TGAACACGATATCACTCAGCCGATTTTTGTTGACAGT 294
| ||.||| |||.||.||.|||||.|||||.||||||||.||.|||
BPUM_1320___y 248 A---AGTTGCGAATGAGCATGAAATCACGCAGCCAATTTTTGTGGATAGT 294
BSNT_02374___ 295 GACCATGCTTTAACCGATTCATTTGAAAATGAATATGTACCTGCATATTA 344
||.|||...|||||.||..|.||||||||||||||||||||.||||||||
BPUM_1320___y 295 GATCATAAATTAACAGAAGCCTTTGAAAATGAATATGTACCAGCATATTA 344
BSNT_02374___ 345 TGTGTTTGATAAAACAGGACAGCTC--CGTCACTTCCAAGCCGGCGGGAG 392
|||.|||||||||||||| .|||| ||||||||||||||.|||||.||
BPUM_1320___y 345 TGTATTTGATAAAACAGG--TGCTCTGCGTCACTTCCAAGCTGGCGGAAG 392
BSNT_02374___ 393 CGGTATGAAAATGCTTGAAAAACGTGTGAACCGCGTTCT------GGCTG 436
|||.|||||.||||||||.||||||||.||.||.||.|| |.|||
BPUM_1320___y 393 CGGGATGAAGATGCTTGAGAAACGTGTCAATCGAGTGCTTTCAGAGTCTG 442
BSNT_02374___ 437 AAA------CGGAATAG 447
||| |.||||||
BPUM_1320___y 443 AAAAGGCTGCAGAATAG 459
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