Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02370 and BPUM_1318
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_02370___ykuT.1.24716.seq
# -bsequence dna-align/BPUM_1318___ykuT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02370___ykuT-BPUM_1318___ykuT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02370___ykuT-BPUM_1318___ykuT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02370___ykuT
# 2: BPUM_1318___ykuT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity: 540/907 (59.5%)
# Similarity: 540/907 (59.5%)
# Gaps: 200/907 (22.1%)
# Score: 1523.0
#
#
#=======================================
BSNT_02370___ 1 ATGGA--CTTTATTAAACAA-TATGATTGGGCGGGACTGATTACAAATGC 47
|||.| |.| ||.|.||| || ||||| ||||.|.|
BPUM_1318___y 1 ATGAAAGCAT--TTGAGCAAGTA-GATTG---------GATTTCCA---- 34
BSNT_02370___ 48 CGGTGTTCTGCTCATTAAACTCGCCATTATGATATTGCT----------- 86
||.|.||||.|| .||.||||||.|||||
BPUM_1318___y 35 -----TTATCCTCAATA------GCAGTATGATTTTGCTAAAACTAATCG 73
BSNT_02370___ 87 CTATTTTATCG-------TTCGATCAT--TAGGCAT--GAAA----ATCA 121
|||||||..|| || ||||| .||.||| |||| ||.|
BPUM_1318___y 74 CTATTTTCGCGATTTACTTT--ATCATCAAAGCCATCGGAAATAAGATGA 121
BSNT_02370___ 122 TTAAACAT--CTGTTTGCAAAATTC---GAGGAGCA-GAATAGCTTGTC- 164
||||.|.| ||..| |.|.|||| ||..|||| || ||||
BPUM_1318___y 122 TTAAGCGTGCCTACT--CCACATTCTCTGAAAAGCATGA------TGTCT 163
BSNT_02370___ 165 ---TATCGGACGTGCACATACGCTCCGAAGCCTGACTCTTAACATATTTG 211
|||| |.|.||.||.|||||.|.|||.||.||..|.||.||.||.|
BPUM_1318___y 164 CTTTATC--AAGGGCTCAGACGCTGCAAAGTCTTACGTTGAATATTTTCG 211
BSNT_02370___ 212 CTTATACTTTGATTTTTATATTCT--TCGTCATGGTTCTAGATTTGTTTC 259
|.||.|..|||||||| |||||| ||||||||.|.||.||.|||||||
BPUM_1318___y 212 CCTACATATTGATTTT--TATTCTAGTCGTCATGATCCTCGACTTGTTTC 259
BSNT_02370___ 260 ATTATGATCCAAGCGCTCTTTTAGCGGGGGCAGGAATCGTCGGCCTGGCT 309
|||||.|.||.|..|||.|..||||.||.|||||..|.||.||.||.||.
BPUM_1318___y 260 ATTATAACCCGACAGCTTTACTAGCTGGTGCAGGGGTTGTGGGGCTTGCG 309
BSNT_02370___ 310 GTCGGATTTGGCGCCCAAGGGCTTGTCAGTGACATCGTGACAGGTTTTTT 359
.||||.||||||||.|||||.||.||.|||||.||.||||||||.|||||
BPUM_1318___y 310 ATCGGCTTTGGCGCTCAAGGTCTAGTGAGTGATATTGTGACAGGATTTTT 359
BSNT_02370___ 360 TATTTTGCTTGAGAAACAATTGGATGTCGGAGATTATATTACCGTTTCCA 409
|||..||.|.|||||||||||.|||||.|||||.|||||.||.|||.|..
BPUM_1318___y 360 TATCCTGTTAGAGAAACAATTCGATGTGGGAGAATATATAACAGTTGCTG 409
BSNT_02370___ 410 CCTTTGACGGAATTGTCGAGCAGGTTGG-CTTAAGAACAACTCAAATCCG 458
..|||||.||.||.||.||.||..|||| ||| |||||.||.||..|..|
BPUM_1318___y 410 GATTTGATGGGATCGTAGAACAAATTGGACTT-AGAACCACGCAGCTTAG 458
BSNT_02370___ 459 CAGCTTTGACGGAACATTGCATTACATCCCCAACAGAAACATCACAAACG 508
.|||||||||||.||..|.||||..||.||.||..|||.|||....||||
BPUM_1318___y 459 AAGCTTTGACGGCACCCTTCATTTTATTCCAAATCGAAGCATATTGAACG 508
BSNT_02370___ 509 TAAGCAATCATTCTCGTGGTACCATGCAGGCTCTTGTTGATATTAAAGTG 558
|.|||||.|||||..|.||.||.||||||||.||.||||||||
BPUM_1318___y 509 TGAGCAACCATTCAAGAGGCACTATGCAGGCACTGGTTGATAT------- 551
BSNT_02370___ 559 CCG-GCTGA-------AAGA-AACATTGATGAAATGA---------TTCA 590
|| ||| | |||| ||..|.|||.|||||| ||||
BPUM_1318___y 552 -CGAGCT-ATCTCCAGAAGAGAATGTGGATCAAATGATCACTGCCCTTCA 599
BSNT_02370___ 591 TATTTTACAGCAGGTTTGTGATGA-------GACGGCAGCGGCTCTTCCA 633
||| ||..|||||||| ||.|.|| ||||.
BPUM_1318___y 600 --------AGC-GGCGTGTGATGAAGTGCGGGAAGACA-------TTCCT 633
BSNT_02370___ 634 CAAATAAAAGAAGGCCCAAATGTCATCGG-------------GATTCAAG 670
|||||.|..|||||.||..|.||..|||| |.|||
BPUM_1318___y 634 CAAATTATCGAAGGGCCTCAAGTTGTCGGCGTGGAGGCGTTCGGTTC--- 680
BSNT_02370___ 671 AACTGGGGACTT--CTGAAATTGTGATCAGGGTCATTGCCAAAACAGAAA 718
|| ||| ||...|.||.| || |||||||.|||||.||||
BPUM_1318___y 681 --CT-----CTTCCCTCGTACTGCG--CA---TCATTGCAAAAACCGAAA 718
BSNT_02370___ 719 ATATGGAACAGTGGCGAGTCGAACGAGTGTTGAGAAAAGAAAT-AAAGAA 767
..|||||.||.||||||||.||||||.|..||.|.|||.|||| ||||||
BPUM_1318___y 719 CAATGGAGCAATGGCGAGTAGAACGAATCCTGCGCAAAAAAATGAAAGAA 768
BSNT_02370___ 768 CGCGT--TCGACCGCGCTTTCCCTAAAGAAACAGAATAA----------- 804
|| |.|| ||.|||||.|||..||
BPUM_1318___y 769 ---GTACTTGA------------TATAGAAAAAGAGCAAAAAGAACCGGG 803
BSNT_02370___ 804 ------- 804
BPUM_1318___y 804 ACAATAA 810
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