Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02367 and BPUM_1316
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_02367___ykuR.1.24716.seq
# -bsequence dna-align/BPUM_1316___ykuR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02367___ykuR-BPUM_1316___ykuR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02367___ykuR-BPUM_1316___ykuR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02367___ykuR
# 2: BPUM_1316___ykuR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1176
# Identity: 804/1176 (68.4%)
# Similarity: 804/1176 (68.4%)
# Gaps: 96/1176 ( 8.2%)
# Score: 2659.5
#
#
#=======================================
BSNT_02367___ 1 ---ATGAAGAAA----GAGGAGCTCATCGCAATTCGCAGAGATCTGCATC 43
.| ||| |||.|..|.||..|.|||||.||||||.|.||||
BPUM_1316___y 1 TTGTT----AAATCGTGAGCAATTGATATCCATTCGAAGAGATTTACATC 46
BSNT_02367___ 44 GTATACCGGAGCTTGGATTTCAGGAGTTCAAAAC-CCAGCAGTAT-TTAT 91
..||.||.||||||||.|||.|.||.|||||||| |.||| |||| |.||
BPUM_1316___y 47 AAATCCCTGAGCTTGGTTTTAAAGAATTCAAAACACAAGC-GTATCTCAT 95
BSNT_02367___ 92 TA--CATGTCTTGGAACAA----TATCCGCAAGACAGAATTGAAATTGAG 135
.| || ||||| | |||.|..||||..|.||||||||.||.
BPUM_1316___y 96 CAATCA--TCTTG-----ATGCTTATTCAAAAGATCGCATTGAAATGGAA 138
BSNT_02367___ 136 AAATGGCGAACAGGGCTTTTTGTAAAAGTGAACGGGACGGCGCCGGAAAA 185
|.|||||||||.||.||||||||.|||||.|| .||||.|
BPUM_1316___y 139 ACATGGCGAACTGGACTTTTTGTCAAAGTAAA-----------GGGAACA 177
BSNT_02367___ 186 AATGCTG-----------GCATACAGAGCGGATATCGATGCGCTTTCTAT 224
|||.||| ||.||..||||.|||||.||.|..||.|||||
BPUM_1316___y 178 AATCCTGAGCGAGTATTTGCGTATCGAGCAGATATGGACGGTCTGTCTAT 227
BSNT_02367___ 225 AGAAGAGCAAACTGGTCTTCCATTCGCATCAGAGCATCACGGCAACATGC 274
....|||.|.||.||...||||||...|||||..|||.|.||.||.||||
BPUM_1316___y 228 TCCCGAGGATACAGGGTATCCATTTCAATCAGTACATGAAGGGAAGATGC 277
BSNT_02367___ 275 ACGCCTGCGGTCACGATTTGCATATGACAATTGCACTCGGCATTATTGAT 324
|.||.||.||.||.||..|.||||||||.||||||||.||..|.||||||
BPUM_1316___y 278 ATGCGTGTGGACATGACCTTCATATGACCATTGCACTTGGTGTCATTGAT 327
BSNT_02367___ 325 CATTTTGTTCACCACCCAGTCAAACATGATTTGCTTTTTCTGTTTCAGCC 374
|||||.|||||..|.|||.|.|||.|.|||.|..|.|||.||||.|||||
BPUM_1316___y 328 CATTTCGTTCATGAGCCAATTAAAGAAGATCTATTATTTATGTTCCAGCC 377
BSNT_02367___ 375 GGCAGAGGAAGGGCCTGGCGGTGCGGAACCAATGCTTGA-GAGCGATGTA 423
||||||.|||||.||.|||||.||.|||||.|||| ||| .||.|||||.
BPUM_1316___y 378 GGCAGAAGAAGGTCCGGGCGGAGCTGAACCGATGC-TGACAAGTGATGTG 426
BSNT_02367___ 424 TTAAAAAAATGGCAGCCTGATTTCATCACTGCCCTTCATATTGCTCCAGA 473
.|.|||||||||..|||.|||||.||.||.||.||.||||||||.||.||
BPUM_1316___y 427 CTGAAAAAATGGACGCCGGATTTTATTACAGCACTGCATATTGCACCTGA 476
BSNT_02367___ 474 GCTTCCGGTAGGCACCATTGCGACAAAAAGC--GGCCTTCTATTTGCGAA 521
...|||.||.||.||.||.|| ||.||||| ||.||.||.|||||.||
BPUM_1316___y 477 ATATCCTGTCGGAACGATAGC--CACAAAGCCAGGGCTGCTTTTTGCCAA 524
BSNT_02367___ 522 TACATCAGAGCTAGTCATCGATCTGGAAGGCAAAGGGGGACATGCGGCAT 571
|||....|||||.||.||.|||||.|||||.|||||.|||||.||.||.|
BPUM_1316___y 525 TACGAGTGAGCTTGTGATTGATCTTGAAGGAAAAGGTGGACACGCTGCTT 574
BSNT_02367___ 572 ATCCGCATTTGGCTGAGGATATGGTTGTAGCAGCAAGTACACTTGTCACC 621
|.||.|||||.||..|.|||||||||||.||.||.|||.|||||||....
BPUM_1316___y 575 ACCCTCATTTAGCGAATGATATGGTTGTGGCTGCGAGTGCACTTGTAGGT 624
BSNT_02367___ 622 CAGCTGCAAACGATTATCTCTAGAAACACAGATCCGCTAGACAGTGCTGT 671
||.||||||.||.||||.|||.|.||....|||||.||.||.|||||.||
BPUM_1316___y 625 CAACTGCAATCGGTTATTTCTCGTAATGTGGATCCTCTTGATAGTGCCGT 674
BSNT_02367___ 672 TATTACAGTTGGTACCATTACCGGAGGCTCGGCACAAAATATCATTGCGG 721
.|||||..||||.||.||||||||.||..||||.|||||||||||||||.
BPUM_1316___y 675 CATTACGATTGGCACGATTACCGGGGGAACGGCTCAAAATATCATTGCGC 724
BSNT_02367___ 722 AAACGGCCCACCTGGAAGGCACGATCCGCACGCTTTCTGAAGAATCGATG 771
|....||..|.||.||.|||||.||.||.||.|||||...||||||.|||
BPUM_1316___y 725 AGCATGCAAAGCTTGATGGCACCATTCGTACACTTTCACCAGAATCTATG 774
BSNT_02367___ 772 AAACAAGT---AAAGGAACGGATTGAAGATGTAGTGAAAGGAATCGAAAT 818
.||.|||| |||| ||.|||||||...|||..|||||.||.|||||
BPUM_1316___y 775 GAAAAAGTGAGAAAG---CGAATTGAAGCACTAGCAAAAGGGATTGAAAT 821
BSNT_02367___ 819 CGGATTCCGCTGCAAAGGAAAAGTGACATATCCGTCTGTC-TATCACCAA 867
.||.|.|...||.||.|.||..|||..|||.||.|| .|| |||.||.||
BPUM_1316___y 822 TGGCTACGAATGTAAGGCAACCGTGCGATACCCTTC-ATCTTATTACGAA 870
BSNT_02367___ 868 GTTTACAATACGAGCGGATTAACAGAAGAATTTATGTCTTTTGTTGCTGA 917
||..|.|||.|.|..|.|.|.|||||||||||||||||.|.|||||||||
BPUM_1316___y 871 GTGGATAATTCCAAGGAACTGACAGAAGAATTTATGTCATATGTTGCTGA 920
BSNT_02367___ 918 ACATCAACTGGCGACTGTAATTGAA-GCAAAAGAAGCAATGACTGGGGAG 966
|.|...|||.||||.|||..||||| || |.|||.||.|||||.||.||.
BPUM_1316___y 921 AGAAGGACTTGCGAATGTGGTTGAATGC-AGAGAGGCCATGACAGGAGAA 969
BSNT_02367___ 967 GATTTTGGCTATATGCTGAAAAAATATCCCGGCTTCATGTTCTGGCTCGG 1016
||||||||.||.||||||||||||||.||.||.||||||||.|||.|.||
BPUM_1316___y 970 GATTTTGGTTACATGCTGAAAAAATACCCTGGATTCATGTTTTGGTTAGG 1019
BSNT_02367___ 1017 CGCTGATTCTGAACATGGGCTTCATCATGCTAAGCTGAATCCCGATGAAA 1066
.|..|||||.|||.||||.||.||||||||.||.||.|..||.|||||||
BPUM_1316___y 1020 GGTCGATTCAGAATATGGTCTGCATCATGCAAAACTTATGCCTGATGAAA 1069
BSNT_02367___ 1067 ATGCGATAGAAACAGCGGTTAATGTCATGACAGGTTATTTTTCTGTTTAT 1116
|.||||||||||||||.||.|||||.|||||.|.||||||
BPUM_1316___y 1070 AAGCGATAGAAACAGCAGTAAATGTTATGACGGCTTATTT---------- 1109
BSNT_02367___ 1117 GCCAATTAA----------------- 1125
||| ||
BPUM_1316___y 1110 --CAA--AAAGCAAGCAGGTGAATGA 1131
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