Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02363 and BPUM_1313
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:50
# Commandline: needle
# -asequence dna-align/BSNT_02363___ykuO.1.24716.seq
# -bsequence dna-align/BPUM_1313.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02363___ykuO-BPUM_1313.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02363___ykuO-BPUM_1313.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02363___ykuO
# 2: BPUM_1313
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 959
# Identity: 615/959 (64.1%)
# Similarity: 615/959 (64.1%)
# Gaps: 130/959 (13.6%)
# Score: 1812.5
#
#
#=======================================
BSNT_02363___ 1 ATGTTTCATAAAGGGGCAACCGCTGTTACGGCATC----GGCGTTTTCTG 46
||||||||||||||.||.||.||.|||.|.||||| .||| .||
BPUM_1313 1 ATGTTTCATAAAGGAGCGACGGCCGTTGCTGCATCTAAAAGCG----GTG 46
BSNT_02363___ 47 GATATTTTGTGGCGGTACAAAGAGAAGGCATTTTTCATTACTCTTTGGAG 96
|.||.|||||.||.|||.||.|.|||||.||||||||.|||..|.|||||
BPUM_1313 47 GGTACTTTGTCGCTGTAAAACGTGAAGGTATTTTTCACTACAGTGTGGAG 96
BSNT_02363___ 97 CAG-GGCTGG-AGAAAGCTTTTTCGTTTGAA---AAG--TAAGATACACT 139
|| ||.||| ||.|| || ||||.|| ||| |||.||.|| |
BPUM_1313 97 -AGCGGGTGGCAGCAA-CT-----GTTTAAACTCAAGCATAAAATTCA-T 138
BSNT_02363___ 140 G-TATCAGCTACATAGGGCCTTACTTATTTGGCGTTGGTGAAAAGGGAAC 188
| .|||||||||||.||.|||||.|||||.||.|||||||||||.||.||
BPUM_1313 139 GCCATCAGCTACATTGGACCTTATTTATTCGGTGTTGGTGAAAACGGTAC 188
BSNT_02363___ 189 AGTCATTCGTTCGGCTGATGAAGGGAAAACCTGGACGATGTCGAGCTTTC 238
|||.|||.|.||.|..||||||||..|.||.|||.||.|.||...|||||
BPUM_1313 189 AGTGATTAGATCTGGAGATGAAGGCCATACATGGGCGCTATCATCCTTTC 238
BSNT_02363___ 239 CGACAAATGCAACAGTGTGGGCGATTATCGGCAGAAACAACGGGTTTGTC 288
|.|||||||||...||.|||.|.||||..||..|.||..||||||||||.
BPUM_1313 239 CAACAAATGCAGTCGTTTGGTCTATTACAGGACGCAAAGACGGGTTTGTG 288
BSNT_02363___ 289 TGCGCCCACGGTAAGCATTGTATTTATGTATCGGATGATTTTGGTGTCTC 338
||.||.||.||.||.|||.||||||||||.||..|||||||.||..|.||
BPUM_1313 289 TGTGCACATGGAAAACATAGTATTTATGTGTCAAATGATTTCGGGATTTC 338
BSNT_02363___ 339 ATGGCG------CGTAGCCAAACCTTTTGCCGAATTTCAT------AATC 376
.||| | .|.||||| ||||| |||| .|.|
BPUM_1313 339 CTGG-GAAATTATGAAGCCA-----TTTGC------TCATGTGAACCACC 376
BSNT_02363___ 377 CCCCTGTTATCCGGTCGCTATG-CCTTCACGGGGGCA--ATCTTTTTATC 423
|.||||||||.||.||..|||| .||.| |||..| ||||||.|||.
BPUM_1313 377 CGCCTGTTATTCGTTCTTTATGTGCTGC---GGGTGATCATCTTTATATT 423
BSNT_02363___ 424 GGCACGCAAATACACGAATATTTTGGCGGCATTTGGGCTTACGACATTAA 473
|||||.|||||.||.||...|...||.||.||.||||..||.|||.|..|
BPUM_1313 424 GGCACTCAAATTCATGAGGTTCACGGAGGAATATGGGTGTATGACTTGGA 473
BSNT_02363___ 474 GCGTGACACTGTCCAAGTTGTC------AAAAAAGAAAAAAACCGGATGA 517
|.|||| .||.|||.|| ||.|.|||.||..|||||||||
BPUM_1313 474 GAGTGA------ACAGGTTTTCCTCCTAAACAGAGAGAAGCACCGGATGA 517
BSNT_02363___ 518 CGGCATCCATGCTCGTGT-TCAATGAAAAT-TGGCTGGTGGCGGCGATGG 565
|.||.||.|||||..|.| || |.||..|| ||..||.|.|| ||..|||
BPUM_1313 518 CAGCTTCTATGCTGCTCTGTC-AGGAGCATCTGCTTGTTTGC-GCATTGG 565
BSNT_02363___ 566 GTTCTGTGAAAGGAAAGCACGGTGCTG-TCACCGTACGGAATCTTTTGAA 614
|.||....|||||.||..|.||..||| ||| |||.||
BPUM_1313 566 GGTCAAAAAAAGGCAAAAAGGGATCTGTTCA--------AATTTT----- 602
BSNT_02363___ 615 TGGTGAAGAATT-CAT--CATTCAATCCAGCATG-------ATCAGA--- 651
|||.|| ||| ||.| ||.|.||||| ||||.|
BPUM_1313 603 ------AGATTTACATACCAAT--ATACTGCATGATATTCAATCACAAGC 644
BSNT_02363___ 652 -------ATAGAAGAATCATTTCTTGATCTTTCAGAGGATGATGGCATTA 694
|.|||.|||||||||.|.|||.|.|||||||||.||.|||||.
BPUM_1313 645 CTTTGCTAGAGAGGAATCATTTTTGGATGTGTCAGAGGATAATAGCATTG 694
BSNT_02363___ 695 TATATGTCACTACAACACAAGATGAAAACGGTTTTTCGAGAATTTACCAG 744
|.|||||.||.||..|||||||.|||.||||.|||||.|.|.|.||.|||
BPUM_1313 695 TGTATGTGACAACTTCACAAGACGAACACGGGTTTTCTAAAGTGTATCAG 744
BSNT_02363___ 745 GCTGATCTCGA--------AGCCCGATCGTTAAAATGGTTCGATACCATT 786
..||||.|.|| ||| |.||||||||.|||||.|||
BPUM_1313 745 CTTGATATAGAGCAAAAAGAGC--------TCAAATGGTTTGATACGATT 786
BSNT_02363___ 787 AAGGGGCATGGATGGAGAGTGGCCAATCAGAAAGAGAATTTCTTTTGCGC 836
||.||.||.||.|...|.||.||||||||.||.||.||.||.||.||.||
BPUM_1313 787 AAAGGACACGGTTTTCGTGTAGCCAATCAAAATGAAAACTTTTTCTGTGC 836
BSNT_02363___ 837 AGGCTTGTATGAATGTAAATTTGTCCAGCCGTACGAAGTTTCAGCAATGA 886
.||.||.||||||.|.||.|||||...|||.||.||.|...|.|||.|||
BPUM_1313 837 TGGTTTATATGAAAGCAAGTTTGTAAGGCCATATGATGAGCCGGCATTGA 886
BSNT_02363___ 887 TTCATTAG- 894
|||||| |
BPUM_1313 887 TTCATT-GA 894
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