Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02363 and BPUM_1313

See Amino acid alignment / Visit BSNT_02363 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_02363___ykuO.1.24716.seq
#    -bsequence dna-align/BPUM_1313.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02363___ykuO-BPUM_1313.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02363___ykuO-BPUM_1313.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02363___ykuO
# 2: BPUM_1313
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 959
# Identity:     615/959 (64.1%)
# Similarity:   615/959 (64.1%)
# Gaps:         130/959 (13.6%)
# Score: 1812.5
# 
#
#=======================================

BSNT_02363___      1 ATGTTTCATAAAGGGGCAACCGCTGTTACGGCATC----GGCGTTTTCTG     46
                     ||||||||||||||.||.||.||.|||.|.|||||    .|||    .||
BPUM_1313          1 ATGTTTCATAAAGGAGCGACGGCCGTTGCTGCATCTAAAAGCG----GTG     46

BSNT_02363___     47 GATATTTTGTGGCGGTACAAAGAGAAGGCATTTTTCATTACTCTTTGGAG     96
                     |.||.|||||.||.|||.||.|.|||||.||||||||.|||..|.|||||
BPUM_1313         47 GGTACTTTGTCGCTGTAAAACGTGAAGGTATTTTTCACTACAGTGTGGAG     96

BSNT_02363___     97 CAG-GGCTGG-AGAAAGCTTTTTCGTTTGAA---AAG--TAAGATACACT    139
                      || ||.||| ||.|| ||     ||||.||   |||  |||.||.|| |
BPUM_1313         97 -AGCGGGTGGCAGCAA-CT-----GTTTAAACTCAAGCATAAAATTCA-T    138

BSNT_02363___    140 G-TATCAGCTACATAGGGCCTTACTTATTTGGCGTTGGTGAAAAGGGAAC    188
                     | .|||||||||||.||.|||||.|||||.||.|||||||||||.||.||
BPUM_1313        139 GCCATCAGCTACATTGGACCTTATTTATTCGGTGTTGGTGAAAACGGTAC    188

BSNT_02363___    189 AGTCATTCGTTCGGCTGATGAAGGGAAAACCTGGACGATGTCGAGCTTTC    238
                     |||.|||.|.||.|..||||||||..|.||.|||.||.|.||...|||||
BPUM_1313        189 AGTGATTAGATCTGGAGATGAAGGCCATACATGGGCGCTATCATCCTTTC    238

BSNT_02363___    239 CGACAAATGCAACAGTGTGGGCGATTATCGGCAGAAACAACGGGTTTGTC    288
                     |.|||||||||...||.|||.|.||||..||..|.||..||||||||||.
BPUM_1313        239 CAACAAATGCAGTCGTTTGGTCTATTACAGGACGCAAAGACGGGTTTGTG    288

BSNT_02363___    289 TGCGCCCACGGTAAGCATTGTATTTATGTATCGGATGATTTTGGTGTCTC    338
                     ||.||.||.||.||.|||.||||||||||.||..|||||||.||..|.||
BPUM_1313        289 TGTGCACATGGAAAACATAGTATTTATGTGTCAAATGATTTCGGGATTTC    338

BSNT_02363___    339 ATGGCG------CGTAGCCAAACCTTTTGCCGAATTTCAT------AATC    376
                     .||| |      .|.|||||     |||||      ||||      .|.|
BPUM_1313        339 CTGG-GAAATTATGAAGCCA-----TTTGC------TCATGTGAACCACC    376

BSNT_02363___    377 CCCCTGTTATCCGGTCGCTATG-CCTTCACGGGGGCA--ATCTTTTTATC    423
                     |.||||||||.||.||..|||| .||.|   |||..|  ||||||.|||.
BPUM_1313        377 CGCCTGTTATTCGTTCTTTATGTGCTGC---GGGTGATCATCTTTATATT    423

BSNT_02363___    424 GGCACGCAAATACACGAATATTTTGGCGGCATTTGGGCTTACGACATTAA    473
                     |||||.|||||.||.||...|...||.||.||.||||..||.|||.|..|
BPUM_1313        424 GGCACTCAAATTCATGAGGTTCACGGAGGAATATGGGTGTATGACTTGGA    473

BSNT_02363___    474 GCGTGACACTGTCCAAGTTGTC------AAAAAAGAAAAAAACCGGATGA    517
                     |.||||      .||.|||.||      ||.|.|||.||..|||||||||
BPUM_1313        474 GAGTGA------ACAGGTTTTCCTCCTAAACAGAGAGAAGCACCGGATGA    517

BSNT_02363___    518 CGGCATCCATGCTCGTGT-TCAATGAAAAT-TGGCTGGTGGCGGCGATGG    565
                     |.||.||.|||||..|.| || |.||..|| ||..||.|.|| ||..|||
BPUM_1313        518 CAGCTTCTATGCTGCTCTGTC-AGGAGCATCTGCTTGTTTGC-GCATTGG    565

BSNT_02363___    566 GTTCTGTGAAAGGAAAGCACGGTGCTG-TCACCGTACGGAATCTTTTGAA    614
                     |.||....|||||.||..|.||..||| |||        |||.||     
BPUM_1313        566 GGTCAAAAAAAGGCAAAAAGGGATCTGTTCA--------AATTTT-----    602

BSNT_02363___    615 TGGTGAAGAATT-CAT--CATTCAATCCAGCATG-------ATCAGA---    651
                           |||.|| |||  ||.|  ||.|.|||||       ||||.|   
BPUM_1313        603 ------AGATTTACATACCAAT--ATACTGCATGATATTCAATCACAAGC    644

BSNT_02363___    652 -------ATAGAAGAATCATTTCTTGATCTTTCAGAGGATGATGGCATTA    694
                            |.|||.|||||||||.|.|||.|.|||||||||.||.|||||.
BPUM_1313        645 CTTTGCTAGAGAGGAATCATTTTTGGATGTGTCAGAGGATAATAGCATTG    694

BSNT_02363___    695 TATATGTCACTACAACACAAGATGAAAACGGTTTTTCGAGAATTTACCAG    744
                     |.|||||.||.||..|||||||.|||.||||.|||||.|.|.|.||.|||
BPUM_1313        695 TGTATGTGACAACTTCACAAGACGAACACGGGTTTTCTAAAGTGTATCAG    744

BSNT_02363___    745 GCTGATCTCGA--------AGCCCGATCGTTAAAATGGTTCGATACCATT    786
                     ..||||.|.||        |||        |.||||||||.|||||.|||
BPUM_1313        745 CTTGATATAGAGCAAAAAGAGC--------TCAAATGGTTTGATACGATT    786

BSNT_02363___    787 AAGGGGCATGGATGGAGAGTGGCCAATCAGAAAGAGAATTTCTTTTGCGC    836
                     ||.||.||.||.|...|.||.||||||||.||.||.||.||.||.||.||
BPUM_1313        787 AAAGGACACGGTTTTCGTGTAGCCAATCAAAATGAAAACTTTTTCTGTGC    836

BSNT_02363___    837 AGGCTTGTATGAATGTAAATTTGTCCAGCCGTACGAAGTTTCAGCAATGA    886
                     .||.||.||||||.|.||.|||||...|||.||.||.|...|.|||.|||
BPUM_1313        837 TGGTTTATATGAAAGCAAGTTTGTAAGGCCATATGATGAGCCGGCATTGA    886

BSNT_02363___    887 TTCATTAG-    894
                     |||||| | 
BPUM_1313        887 TTCATT-GA    894


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