Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02361 and BPUM_1310
See
Amino acid alignment /
Visit
BSNT_02361 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:50
# Commandline: needle
# -asequence dna-align/BSNT_02361___ccpC.1.24716.seq
# -bsequence dna-align/BPUM_1310___ccpC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02361___ccpC-BPUM_1310___ccpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02361___ccpC-BPUM_1310___ccpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02361___ccpC
# 2: BPUM_1310___ccpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 906
# Identity: 661/906 (73.0%)
# Similarity: 661/906 (73.0%)
# Gaps: 48/906 ( 5.3%)
# Score: 2379.0
#
#
#=======================================
BSNT_02361___ 1 ATGCAGCTTCAAGAGCTTCATATGCTCGTAGTTTTAGCTGAGGAATTAAA 50
|||||||||||.|||.|.||||||||.||.||..||..|||.|||||.||
BPUM_1310___c 1 ATGCAGCTTCAGGAGTTACATATGCTTGTTGTGCTAAGTGAAGAATTGAA 50
BSNT_02361___ 51 TATGAGAAAGGCGGCAGAACGGCTTTTTGTATCTCAGCCGGCTTTATCTC 100
||||||||||||..|.||.|||||.|||||.||||||||.||.|||||.|
BPUM_1310___c 51 TATGAGAAAGGCTTCGGAGCGGCTCTTTGTCTCTCAGCCTGCGTTATCCC 100
BSNT_02361___ 101 AGCGCTTACAAACCATTGAAAAGGCGTGGGGAAAAAAAATCTTTTTAAGA 150
|..|.||.||.||.||.|||||.|.||||||||..|||||||||||..|.
BPUM_1310___c 101 AAAGATTGCAGACAATCGAAAAAGAGTGGGGAACCAAAATCTTTTTTCGT 150
BSNT_02361___ 151 TCTCAAAAAGGATTAACGGTAACGCCCGCCGGTGAGAAAATCATTCAGTT 200
||||||||||||.|.||.|||||..|.||.|||||..|.||||||||.||
BPUM_1310___c 151 TCTCAAAAAGGACTCACCGTAACTTCGGCAGGTGAACAGATCATTCAATT 200
BSNT_02361___ 201 TGCGAATGATGTGACATTAGAGCAGGAAAGAATAAGAGAAAATATTGACG 250
|||.||.||.|||||..|.||.||.||..||.|.||||||...|||||.|
BPUM_1310___c 201 TGCAAAAGAAGTGACGGTTGAACAAGATCGAGTGAGAGAACGAATTGATG 250
BSNT_02361___ 251 AGCTTGAAGGTGAAATTCACGGCACATTGAAGCTTGCCGTCGCCTCCATA 300
|.||||||||.||||||||||||||..|.||||||||.||.||.||.||.
BPUM_1310___c 251 AACTTGAAGGAGAAATTCACGGCACGCTAAAGCTTGCGGTTGCATCTATT 300
BSNT_02361___ 301 ATCGGTCAGCATTGGCTCCCTAAAGTCCTGAAGACG-TATGTTGAAAAGT 349
||.||.|||||.|||||.||.|||||..|.||| || |||||.|||||.|
BPUM_1310___c 301 ATTGGGCAGCACTGGCTGCCGAAAGTGTTAAAG-CGATATGTCGAAAAAT 349
BSNT_02361___ 350 ATCCGAATGCAAAGATCTCGCTCATAACCGGGTGGAGCAGCGAAATGCTG 399
|.||.|||||.|||.|.||.||..|.|||||.|||||.||.||||||||.
BPUM_1310___c 350 ACCCAAATGCGAAGGTATCACTTGTGACCGGCTGGAGTAGTGAAATGCTC 399
BSNT_02361___ 400 AAAAGCTTGTATGAGGATCAGGTTCATATCGGCATTATAAGAGGCAACCC 449
||||||||.||.||||||||.||.||.||.||.||.||..|.||.|||||
BPUM_1310___c 400 AAAAGCTTATACGAGGATCACGTACACATTGGGATCATTCGCGGAAACCC 449
BSNT_02361___ 450 TGAGTGGAAGGGGCGCAAAGATTACTTAATGACAGATCATCTGTATTTAG 499
|||.||||||||....||.||.|||||.||||||||||||.|.|||||||
BPUM_1310___c 450 TGATTGGAAGGGAACTAAGGAATACTTGATGACAGATCATTTATATTTAG 499
BSNT_02361___ 500 TGGATACTGAAATTTCCTGCATCGAAGA------------TATTGCCCAT 537
|.|||.||| || |||.|||| .|||| |.
BPUM_1310___c 500 TAGATTCTG----TT-----ATCAAAGACGTGGATGAGTTAATTG---AG 537
BSNT_02361___ 538 ACAGAACGGCCGTTTATCCAGTTTAAAAGTGATAGCACTTATTTTCAGGA 587
||||||||.||||||||.||.||||||||.||.|||||.||||.|||.||
BPUM_1310___c 538 ACAGAACGCCCGTTTATTCAATTTAAAAGCGACAGCACGTATTATCAAGA 587
BSNT_02361___ 588 AATTCAGCACTGGTGGCATCAAAAATTTAAAACGTCGCCGAAACAGACGA 637
||||||||||||||||||||||||.||.|||..|||.||.||.|||||||
BPUM_1310___c 588 AATTCAGCACTGGTGGCATCAAAAGTTCAAAGTGTCTCCAAAGCAGACGA 637
BSNT_02361___ 638 TATTGGTTGATCAGATTGAAACGTGCAAACAGATGGCGCTGCACGGAATC 687
|..|.||.|||||||||||.|||||.|||||.|||||....|||||.|||
BPUM_1310___c 638 TTCTAGTGGATCAGATTGAGACGTGTAAACAAATGGCTTACCACGGCATC 687
BSNT_02361___ 688 GGTTATGCCATTTTGCCGTCTGTTACCCTTCAAA-----ATGAAGATAAA 732
||.||.|||||||||||.||.||.||| |.|.| |||| |.|||
BPUM_1310___c 688 GGCTACGCCATTTTGCCTTCGGTCACC--TTATACGACCATGA--AAAAA 733
BSNT_02361___ 733 GTG--AATAAAATGCCTCTTTTAGACATGAAAGGGCATCCGATCGGTCGG 780
||| .||||||..||.|||.|.|||.||||.||..|.|..|||||.||.
BPUM_1310___c 734 GTGTTCATAAAACACCGCTTGTTGACGTGAATGGAGAGCAAATCGGACGT 783
BSNT_02361___ 781 GATACATGGTTATTAGGCTATGAGCCTGCCTTTGAACTGAAACAAGTTCA 830
||.||||||.|..||||||||||..||.|.|||.||.|.|||||.||.||
BPUM_1310___c 784 GACACATGGCTGCTAGGCTATGAAGCTTCTTTTCAATTAAAACAGGTGCA 833
BSNT_02361___ 831 AGCTTTTGTACAAGTGATAAAGGATATGCTGGATCAGGAAAATCCAT--- 877
|||.|||||....|||.|.||.||.|||||.| |||.|.||
BPUM_1310___c 834 AGCATTTGTTGGTGTGGTCAAAGAAATGCTTG-------AAAGCGATGCG 876
BSNT_02361___ 878 -TTTAA 882
|.|||
BPUM_1310___c 877 GTATAA 882
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.