Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02358 and BPUM_1307

See Amino acid alignment / Visit BSNT_02358 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_02358___ykuK.1.24716.seq
#    -bsequence dna-align/BPUM_1307___ykuK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02358___ykuK-BPUM_1307___ykuK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02358___ykuK-BPUM_1307___ykuK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02358___ykuK
# 2: BPUM_1307___ykuK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 559
# Identity:     368/559 (65.8%)
# Similarity:   368/559 (65.8%)
# Gaps:          62/559 (11.1%)
# Score: 1189.5
# 
#
#=======================================

BSNT_02358___      1 ---------------------ATGGCTGATTCTTTTCTGTTTTATAATCT     29
                                          .||..||||||||||   |.|||.|||||
BPUM_1307___y      1 ATGAAAAAGGAGTTCCTTTCTGTGAGTGATTCTTTT---TATTACAATCT     47

BSNT_02358___     30 TTCAGAAGCACAGATGACCTTTCAAGAT---GTGATG-GAACGGCTTAAA     75
                     |||.||||..||..|..|.|||...|||   ||.||| |||    |.|||
BPUM_1307___y     48 TTCTGAAGATCATTTAGCGTTTTCTGATGTCGTCATGAGAA----TGAAA     93

BSNT_02358___     76 GCCTTTGTTCAAAAGGACCC-----CCGTTCTTCTTATGTGTTATCGATC    120
                     |.||||.|||.|||.|||||     ||||     .|||||||||||.||.
BPUM_1307___y     94 GACTTTATTCGAAAAGACCCTAGATCCGT-----CTATGTGTTATCCATT    138

BSNT_02358___    121 GGAACCGATTCACAGGTTTACCGCGATTACACAAAGTTTATTACCGCATT    170
                     ||.||.||.||.|||||..|.|...||..||||||.|||||.||.|||.|
BPUM_1307___y    139 GGTACGGACTCGCAGGTCAATCAAAATGTCACAAAATTTATGACTGCAAT    188

BSNT_02358___    171 GCATTTGCATCGTACAGGCAAGGGAGCTTGGGGCTGCTT-----GAAAAA    215
                     .|||.|.||.||.|..|||||.||.||||||||||||.|     .|.||.
BPUM_1307___y    189 TCATCTCCACCGGATTGGCAAAGGGGCTTGGGGCTGCCTCACGCAACAAG    238

BSNT_02358___    216 TCATACAGTCGACAGACCCATACATAGCCTTCGGGAGAAGATTTCGTTAG    265
                     |.|| |||    |||.||..|.||.||||||.|.||.||.|||||.||||
BPUM_1307___y    239 TGAT-CAG----CAGGCCTGTGCAAAGCCTTAGAGAAAAAATTTCATTAG    283

BSNT_02358___    266 AAACGGCGTACAGCCAAGAAACG-----GCCGCTCATATTCTTGATGGAC    310
                     |.||.||||..|||||  |||.|     ||.|   |.||.|||||.||.|
BPUM_1307___y    284 AGACAGCGTTTAGCCA--AAAGGTATGTGCAG---ACATCCTTGAGGGGC    328

BSNT_02358___    311 ACTTAATGGATATTACCGATCTGCTCCTGCCCTTTACCGGTGAGGGGGCG    360
                     ..||||..||..|.|..|||.||||.||.||.|||.|.|..||.|||||.
BPUM_1307___y    329 CTTTAACAGAACTGATGGATTTGCTTCTTCCGTTTGCTGAGGAAGGGGCA    378

BSNT_02358___    361 GATCTTACCTTTGAAGTTCACTTGGATATTGGGAAAAAAGGGCTTACAAA    410
                     ||.|||...|||||||..||.||.||||||||.||||||||...||||||
BPUM_1307___y    379 GACCTTCGTTTTGAAGCCCATTTAGATATTGGCAAAAAAGGAAGTACAAA    428

BSNT_02358___    411 AGATCTGATCCAGGAAATGACTGGACGTATTACCTCCATGGGGATTGAGG    460
                     |||.|||||||||||||||||.|||...||.||..|.|||||.|||||.|
BPUM_1307___y    429 AGAACTGATCCAGGAAATGACCGGAATGATCACAGCTATGGGAATTGAAG    478

BSNT_02358___    461 CCAAAATAAAGCCGGATTCATACACTGCCTTCAGCTATGCAAATCGTTTC    510
                     |.||||||||.||.||.||||||.|.||.||..|||||||.|||||.|.|
BPUM_1307___y    479 CTAAAATAAAACCCGACTCATACGCAGCATTTTGCTATGCCAATCGATAC    528

BSNT_02358___    511 ACAAAATAA    519
                     |||||||||
BPUM_1307___y    529 ACAAAATAA    537


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