Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02357 and BPUM_1306

See Amino acid alignment / Visit BSNT_02357 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_02357___ykuJ.1.24716.seq
#    -bsequence dna-align/BPUM_1306___ykuJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02357___ykuJ-BPUM_1306___ykuJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02357___ykuJ-BPUM_1306___ykuJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02357___ykuJ
# 2: BPUM_1306___ykuJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 244
# Identity:     198/244 (81.1%)
# Similarity:   198/244 (81.1%)
# Gaps:           5/244 ( 2.0%)
# Score: 795.0
# 
#
#=======================================

BSNT_02357___      1 ATGTCACAATTAATGGGTATCATCACACGGCTGCAAAGTCTGCAAGAAAC     50
                     |||||||||||||||||||||||.|||.|||||||||||||.|||||.||
BPUM_1306___y      1 ATGTCACAATTAATGGGTATCATTACAAGGCTGCAAAGTCTTCAAGAGAC     50

BSNT_02357___     51 AGCGGAAGCGGCTAACGAGCCAATGCAGCGCTATTTCGAAGTGAATGGTG    100
                     |||.|||||.||.||||||||....|||||.||||||||||||||.||||
BPUM_1306___y     51 AGCAGAAGCTGCAAACGAGCCGGCACAGCGTTATTTCGAAGTGAACGGTG    100

BSNT_02357___    101 AGAAAATATGCAGTGTTAAATATTTCGAAAAAAATCAAACGTTTGAACTG    150
                     |||||||.||.|||||.||.|||||||||||.|||||||||||||||.||
BPUM_1306___y    101 AGAAAATCTGTAGTGTGAAGTATTTCGAAAAGAATCAAACGTTTGAATTG    150

BSNT_02357___    151 ACGGTTTTCCAA-AAGGGTGAAAAACCTAACACATATCCGTTTGATAATA    199
                     ||.|||||.||| ||||| ||.||.||.|||||.|..||.|||||.||.|
BPUM_1306___y    151 ACTGTTTTTCAACAAGGG-GATAAGCCAAACACTTTCCCATTTGACAACA    199

BSNT_02357___    200 TCGACATGGTTTCCATCGAAATCTTTGAACTTCTTCA---GTAA    240
                     |.||.|||.||||.||.||.||.|||||.|||.|.||   .|||
BPUM_1306___y    200 TTGATATGATTTCGATTGAGATTTTTGAGCTTTTACAATCCTAA    243


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.