Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01014 and BPUM_1305
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_01014.1.24716.seq
# -bsequence dna-align/BPUM_1305.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01014-BPUM_1305.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01014-BPUM_1305.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01014
# 2: BPUM_1305
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity: 480/1003 (47.9%)
# Similarity: 480/1003 (47.9%)
# Gaps: 368/1003 (36.7%)
# Score: 856.5
#
#
#=======================================
BSNT_01014 1 ATGATGCAGTTTTTTTTTCAAA-----------GCT-CTAATTTCAGA-- 36
|||| ||||| ||| |||||| ||
BPUM_1305 1 ATGA-------------TCAAACGTGACAAGCGGCTGCTAATT---GATT 34
BSNT_01014 37 -GGAAAG-----------CAG----AAACAGTACCGCGATCTGCTTCGTG 70
|..||| ||| |||..||.|.| ||||| ||
BPUM_1305 35 TGCCAAGACCAGATCATCCAGATGCAAATGGTGCTG----CTGCT--GT- 77
BSNT_01014 71 GC---ATTTTTTTGGAGG-AGATTGCCCACGTTGAACTGGTTCAAA--AC 114
|| |.||..|.||.|| |.||| ||.||||.| ||.||.| |.
BPUM_1305 78 GCAAGAATTACTCGGCGGAAAATT-----CGGTGAAAT-GTCCACATTAA 121
BSNT_01014 115 ACAAT---------CAATGCTTTA---TTAGATGAA---------TCA-- 141
|.||| ||||.||||| |||||.||| |||
BPUM_1305 122 ATAATTACATGTTCCAATCCTTTAACTTTAGAGGAAAACGAAAACTCAAA 171
BSNT_01014 142 -----------------------------GG----------CGGT----- 147
|| ||||
BPUM_1305 172 CCGTTTTATGATCTCGTATCCAGTATTACGGCTGAAGAATTCGGTCATGT 221
BSNT_01014 148 -GAAGGTGT-----CGGCAGTCA-------------AGGTAC-------- 170
|||..||| |.||.||.| |||.||
BPUM_1305 222 AGAACTTGTGACCACTGCTGTGAATCTCATGATTACAGGGACCACCCATG 271
BSNT_01014 171 ----AGATCAAG---CGCCACTTGATG-AAGCG------GTTAAAC-ATG 205
|||||.|| ||.||| .|||| ||||| |.||||| |
BPUM_1305 272 GCGGAGATCCAGATACGACAC-CGATGAAAGCGGCTGTCGATAAACGA-- 318
BSNT_01014 206 CTAATCCTCATCATTATATTATTGGA---GCGCAAA---GTTCCCTTCCG 249
|||.|.||.|||| |||||..| ||.|||| ||| .||||
BPUM_1305 319 --AATACACAGCATT---TTATTCAAACGGCTCAAACAGGTT---ATCCG 360
BSNT_01014 250 GTTGAT------GCAGGAGGCAATCCGTGGAACGGGTCGTGGGTGTATAA 293
.||||| ||| ||.||.||||.||| .|.|..|||.|..
BPUM_1305 361 TTTGATTCCATGGCA------AAACCTTGGACCGG--AGAGAATGTGTTC 402
BSNT_01014 294 CCA--CGGAAACTTAATTACTGACCTGCTGGATAACCTGCTT-CTTGAGT 340
.|| |||.|||.|.|||..||||||.||..|||| .|.||| |||||.|
BPUM_1305 403 TCAAGCGGCAACCTGATTCTTGACCTCCTTCATAA-TTTCTTCCTTGAAT 451
BSNT_01014 341 -CGACAGGTGTGCT-----GCAAAAAACAAGAATTTATGAAATGAGCTCT 384
|| |.||| |||.||||...|..|.||||||||||
BPUM_1305 452 GCG------GGGCTCGTACGCACAAAATGCGCGTATATGAAATGA----- 490
BSNT_01014 385 AATCAGA-CATTCC--------GCGAAACACTTGCTTTTCTGATTGTACG 425
|||| || ||| |.||.|...|.|.||.|.|..||||.||
BPUM_1305 491 ---CAGATCA-TCCTACAGCAAGAGAGATGATCGGTTATTTACTTGTGCG 536
BSNT_01014 426 CGACAATGCTCACCAGAAT----GCATTCGCGAAAGCGCTCGA------G 465
.|.|..||..||| .| ||||..||.||.|||||.|| .
BPUM_1305 537 GGGCGGTGTGCAC----GTTGTGGCATATGCAAAGGCGCTTGAAGTAGCC 582
BSNT_01014 466 ACATTGGGCGTTGA-GTGGGCGAAGCTCCTCCCTGTGCCGAATTATGACA 514
||| ||.||.|| ||.|| |||..|.|||||..|.||.||....|||
BPUM_1305 583 ACA---GGAGTAGATGTAGG-GAAAATGCTCCCGATTCCAAACCTCGAC- 627
BSNT_01014 515 TTAATAAATATCCTGA--GTGC-AGAAAGTATG----TCGAATTAGGC-T 556
||.|||||...||| .||| |||||.|.|| .|.||.||..| |
BPUM_1305 628 --AACAAATACTTTGATTCTGCGAGAAAATTTGAAGACCAAAATATTCAT 675
BSNT_01014 557 ACCATAATG--CACAGTTTAACTTTAGGTTGGATGAAACG--------AG 596
||.|.|.|| |||| ||||| |||.||| ||
BPUM_1305 676 ACAAAACTGTACACA-------TTTAG------TGATACGGATTACAAAG 712
BSNT_01014 597 A-ATCGATGAAAT-----------------CTATCAAGGGAAA-----TC 623
| |||.||.|||| |.||..|.||||| ||
BPUM_1305 713 ATATCAATAAAATTTGGAAGGGCAGCCATCCGATTGATGGAAAACCGCTC 762
BSNT_01014 624 TC------------CAAGCCGAAATGGCGGAG----AGTTACAAGTAATA 657
.| ||..|||.|| |||| .||..||..|.|||
BPUM_1305 763 ACAGTGATTGAGGGCACCCCGCAA----GGAGCACCTGTGCCAGATTATA 808
BSNT_01014 658 GA----TCCACCGGCAGGGTTTCCCGTACCAGTGC--TTCCTGAAA---- 697
|| | |||||.||.||||.|| |||| || |||| |||
BPUM_1305 809 GAGAATT--ACCGGAAGAGTTTGCC---CCAG-GCATTTCC--AAAGAGG 850
BSNT_01014 698 -----TACCAAATGAACACA-GTCCTGGGTTAGGCGATATGAATGCTTAA 741
.||.||||...||.| ||| |.|.|.|||.|| .||.||.|
BPUM_1305 851 ATTTTGACGAAATTGCCAAACGTC-----TAATGAGATCTG-CTGGTTTA 894
BSNT_01014 741 --- 741
BPUM_1305 895 TAA 897
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