Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02353 and BPUM_1302
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:50
# Commandline: needle
# -asequence dna-align/BSNT_02353___ykuE.1.24716.seq
# -bsequence dna-align/BPUM_1302___ykuE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02353___ykuE-BPUM_1302___ykuE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02353___ykuE-BPUM_1302___ykuE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02353___ykuE
# 2: BPUM_1302___ykuE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 964
# Identity: 564/964 (58.5%)
# Similarity: 564/964 (58.5%)
# Gaps: 209/964 (21.7%)
# Score: 1420.0
#
#
#=======================================
BSNT_02353___ 1 ATGAAAAAGATGTCCAGAAGACAATTTCTAAAAGGA-ATGTTCGGCGC-- 47
|||||..|..|.||..|.|||||.|||.|||||||| .||.| |||||
BPUM_1302___y 1 ATGAAGCAACTTTCTCGGAGACAGTTTTTAAAAGGAGCTGCT-GGCGCGA 49
BSNT_02353___ 48 ----TCTTGCTGCCGGGGCTTTAACGGCCGGC-------GGGGGATATGG 86
||| |||...|||| || .|.||||||||
BPUM_1302___y 50 GCATTCT------CGGTTTTTTA-------GCTACAACATGTGGATATGG 86
BSNT_02353___ 87 CTATGCCAGGTATCTCGAGCCGCATATGATCGA------GACAACCGAAC 130
.||||||||.||..||||.||.|..|||||||| |.||| .||.|
BPUM_1302___y 87 ATATGCCAGATACATCGAACCACGCATGATCGATACTGTGTCAA-TGACC 135
BSNT_02353___ 131 A---------CACAATAAAAAGCTCTCTCATCCCGC-ACGGATTTGA-CG 169
| |.| |||| |||.|| .| |||||| |.
BPUM_1302___y 136 ATTCGGGATGCTC-------AGCT------TCCAGCTTC--ATTTGATCA 170
BSNT_02353___ 170 GTTTTAAAATCGTGCAGTTCAGCGATGCACACTTGAGTGATTAC-TTTAC 218
| ||||||||.|..||.||.||.||||..||.||.||||| ||| |||.|
BPUM_1302___y 171 G-TTTAAAATTGCTCAATTTAGTGATGTTCATTTAAGTGA-TACATTTCC 218
BSNT_02353___ 219 TCTCGAA-GATTTAAAAACTGTCATTCTTACAATTAA---TGAATCTAAA 264
| ||.|| ||.|||.||.|.|||.|.|....|||.|| |||||||
BPUM_1302___y 219 T-TCAAAGGAATTAGAATCCGTCGTGCAGCAAATCAACGCTGAATCT--- 264
BSNT_02353___ 265 CCTGATCTCATTGTTTTTACAGGTGAT-------ATTATCGATAATCCTG 307
||.||.||||||||.||.|||||.||| |||.||.|..||| |
BPUM_1302___y 265 CCAGACCTCATTGTGTTCACAGGGGATCTCGTTGATTTTCAAGCATC--G 312
BSNT_02353___ 308 AT--ACGTACCAGCACCACCAGGC---AGTCATTCCATTA-TTGAGAAAG 351
|| |.| ||||..|..|.|| ||.| || ||||..|||
BPUM_1302___y 313 ATTGAAG----AGCATGAAAAAGCGAAAGCC-------TATTTGACTAAG 351
BSNT_02353___ 352 CTTAATGCTCCCTTCGGCAAGCTTTGTATTTACGGCAATCATGATCACGG 401
||..|.||.||.||.||.||||||...||.|.|||.||||||||..||||
BPUM_1302___y 352 CTCCACGCCCCGTTTGGTAAGCTTGCGATATGCGGTAATCATGACTACGG 401
BSNT_02353___ 402 AGGCTATGGAACTGCCGTTT---ACAAAAGCCTGATGACGGCCGGAGGTT 448
|...|.|||.|.||...||| |.|||| .||| |||.|.|
BPUM_1302___y 402 ACCATTTGGCATTGATCTTTATGAGAAAA---CGAT-------GGAAGAT 441
BSNT_02353___ 449 TCACGG-TATATCGCAATGGCTAT-CAAACAT----TGT---CACTCGCA 489
| .||| |.|| ||| ||| .|||.|| ||| ||.|.|.|
BPUM_1302___y 442 T-GCGGCTTTA---CAA----TATGTAAAAATGATGTGTTTCCATTAGAA 483
BSNT_02353___ 490 GA-----TGGCAGCAAAATCGAGATTGCTTCGCTTGATGACTTAATGCTG 534
.| .|||| ||.|.|| |||||||..|..|.||||||||.|||.||
BPUM_1302___y 484 AAAGAAGGGGCA-CATATTC-AGATTGCGACAATGGATGACTTGATGATG 531
BSNT_02353___ 535 GGAAACCCAGATTATGAAGGCACCCTTTCAAGGCTGAGCGA--------- 575
.|....||.|||||||| |||...|| |||||
BPUM_1302___y 532 AGTGTGCCGGATTATGA------CCTGATAA-----AGCGAGAAGTATCA 570
BSNT_02353___ 576 -CAGACTT-TTTTCCATTCTTCTCGTCCATGAACCTGATGCGGCCT---- 619
|.||.|| |||.||.|.||.|||||.|||||.||||||||.||.|
BPUM_1302___y 571 TCTGATTTATTTACCTTGCTGCTCGTACATGAGCCTGATGCAGCATTGGA 620
BSNT_02353___ 620 --TGAAAACAACAGATTATCCC-GTGAACCTTCAGCTTTCCGGCCATACA 666
||.|.||| ||||| .|.|||.|.||||||||.||.|||||.
BPUM_1302___y 621 GCTGGATACA-------ATCCCTATTAACTTGCAGCTTTCTGGACATACC 663
BSNT_02353___ 667 CACGGCGGCCAGATTCAGCTGCCTTTTTACGGACCGATTATTAC------ 710
||.|||||.|||.|.|||||.||||||||.|||||.|||.|.||
BPUM_1302___y 664 CATGGCGGTCAGGTGCAGCTCCCTTTTTATGGACCCATTCTCACAGCACC 713
BSNT_02353___ 711 -----GCC-TCCATATGGA-AAAGTCTACACAGAGGGAATGTATCAAACG 753
||| |.||||||.| ||.||.||.|| ||||..|||
BPUM_1302___y 714 TTTCGGCCATACATATGTAGAAGGTTTATAC----GGAAGTTAT------ 753
BSNT_02353___ 754 GGCAGCACTCATATTTACGTAAACCGAGGCCTCGGGATGACCAGGCTGCC 803
|||||| |..||.||.||.|||||.||.||.||||..||.||.|||||
BPUM_1302___y 754 --CAGCAC-CGCATCTATGTCAACCGCGGACTTGGGACAACAAGACTGCC 800
BSNT_02353___ 804 TTTGCGGTTTCTGGCCAAGCCTGAAATCACTGTCTTCAC-----CTTAAA 848
..|.||.|||.|.|||||.||||||.|.||..|.||||| |||
BPUM_1302___y 801 GCTTCGATTTTTAGCCAAACCTGAATTAACGTTTTTCACACTCTCTT--- 847
BSNT_02353___ 849 AAGCACAAATTAA- 861
|.|..|||.|
BPUM_1302___y 848 ---CTCGCATTTAG 858
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