Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02353 and BPUM_1302

See Amino acid alignment / Visit BSNT_02353 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_02353___ykuE.1.24716.seq
#    -bsequence dna-align/BPUM_1302___ykuE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02353___ykuE-BPUM_1302___ykuE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02353___ykuE-BPUM_1302___ykuE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02353___ykuE
# 2: BPUM_1302___ykuE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 964
# Identity:     564/964 (58.5%)
# Similarity:   564/964 (58.5%)
# Gaps:         209/964 (21.7%)
# Score: 1420.0
# 
#
#=======================================

BSNT_02353___      1 ATGAAAAAGATGTCCAGAAGACAATTTCTAAAAGGA-ATGTTCGGCGC--     47
                     |||||..|..|.||..|.|||||.|||.|||||||| .||.| |||||  
BPUM_1302___y      1 ATGAAGCAACTTTCTCGGAGACAGTTTTTAAAAGGAGCTGCT-GGCGCGA     49

BSNT_02353___     48 ----TCTTGCTGCCGGGGCTTTAACGGCCGGC-------GGGGGATATGG     86
                         |||      |||...||||       ||       .|.||||||||
BPUM_1302___y     50 GCATTCT------CGGTTTTTTA-------GCTACAACATGTGGATATGG     86

BSNT_02353___     87 CTATGCCAGGTATCTCGAGCCGCATATGATCGA------GACAACCGAAC    130
                     .||||||||.||..||||.||.|..||||||||      |.||| .||.|
BPUM_1302___y     87 ATATGCCAGATACATCGAACCACGCATGATCGATACTGTGTCAA-TGACC    135

BSNT_02353___    131 A---------CACAATAAAAAGCTCTCTCATCCCGC-ACGGATTTGA-CG    169
                     |         |.|       ||||      |||.|| .|  |||||| |.
BPUM_1302___y    136 ATTCGGGATGCTC-------AGCT------TCCAGCTTC--ATTTGATCA    170

BSNT_02353___    170 GTTTTAAAATCGTGCAGTTCAGCGATGCACACTTGAGTGATTAC-TTTAC    218
                     | ||||||||.|..||.||.||.||||..||.||.||||| ||| |||.|
BPUM_1302___y    171 G-TTTAAAATTGCTCAATTTAGTGATGTTCATTTAAGTGA-TACATTTCC    218

BSNT_02353___    219 TCTCGAA-GATTTAAAAACTGTCATTCTTACAATTAA---TGAATCTAAA    264
                     | ||.|| ||.|||.||.|.|||.|.|....|||.||   |||||||   
BPUM_1302___y    219 T-TCAAAGGAATTAGAATCCGTCGTGCAGCAAATCAACGCTGAATCT---    264

BSNT_02353___    265 CCTGATCTCATTGTTTTTACAGGTGAT-------ATTATCGATAATCCTG    307
                     ||.||.||||||||.||.|||||.|||       |||.||.|..|||  |
BPUM_1302___y    265 CCAGACCTCATTGTGTTCACAGGGGATCTCGTTGATTTTCAAGCATC--G    312

BSNT_02353___    308 AT--ACGTACCAGCACCACCAGGC---AGTCATTCCATTA-TTGAGAAAG    351
                     ||  |.|    ||||..|..|.||   ||.|       || ||||..|||
BPUM_1302___y    313 ATTGAAG----AGCATGAAAAAGCGAAAGCC-------TATTTGACTAAG    351

BSNT_02353___    352 CTTAATGCTCCCTTCGGCAAGCTTTGTATTTACGGCAATCATGATCACGG    401
                     ||..|.||.||.||.||.||||||...||.|.|||.||||||||..||||
BPUM_1302___y    352 CTCCACGCCCCGTTTGGTAAGCTTGCGATATGCGGTAATCATGACTACGG    401

BSNT_02353___    402 AGGCTATGGAACTGCCGTTT---ACAAAAGCCTGATGACGGCCGGAGGTT    448
                     |...|.|||.|.||...|||   |.||||   .|||       |||.|.|
BPUM_1302___y    402 ACCATTTGGCATTGATCTTTATGAGAAAA---CGAT-------GGAAGAT    441

BSNT_02353___    449 TCACGG-TATATCGCAATGGCTAT-CAAACAT----TGT---CACTCGCA    489
                     | .||| |.||   |||    ||| .|||.||    |||   ||.|.|.|
BPUM_1302___y    442 T-GCGGCTTTA---CAA----TATGTAAAAATGATGTGTTTCCATTAGAA    483

BSNT_02353___    490 GA-----TGGCAGCAAAATCGAGATTGCTTCGCTTGATGACTTAATGCTG    534
                     .|     .|||| ||.|.|| |||||||..|..|.||||||||.|||.||
BPUM_1302___y    484 AAAGAAGGGGCA-CATATTC-AGATTGCGACAATGGATGACTTGATGATG    531

BSNT_02353___    535 GGAAACCCAGATTATGAAGGCACCCTTTCAAGGCTGAGCGA---------    575
                     .|....||.||||||||      |||...||     |||||         
BPUM_1302___y    532 AGTGTGCCGGATTATGA------CCTGATAA-----AGCGAGAAGTATCA    570

BSNT_02353___    576 -CAGACTT-TTTTCCATTCTTCTCGTCCATGAACCTGATGCGGCCT----    619
                      |.||.|| |||.||.|.||.|||||.|||||.||||||||.||.|    
BPUM_1302___y    571 TCTGATTTATTTACCTTGCTGCTCGTACATGAGCCTGATGCAGCATTGGA    620

BSNT_02353___    620 --TGAAAACAACAGATTATCCC-GTGAACCTTCAGCTTTCCGGCCATACA    666
                       ||.|.|||       ||||| .|.|||.|.||||||||.||.|||||.
BPUM_1302___y    621 GCTGGATACA-------ATCCCTATTAACTTGCAGCTTTCTGGACATACC    663

BSNT_02353___    667 CACGGCGGCCAGATTCAGCTGCCTTTTTACGGACCGATTATTAC------    710
                     ||.|||||.|||.|.|||||.||||||||.|||||.|||.|.||      
BPUM_1302___y    664 CATGGCGGTCAGGTGCAGCTCCCTTTTTATGGACCCATTCTCACAGCACC    713

BSNT_02353___    711 -----GCC-TCCATATGGA-AAAGTCTACACAGAGGGAATGTATCAAACG    753
                          ||| |.||||||.| ||.||.||.||    ||||..|||      
BPUM_1302___y    714 TTTCGGCCATACATATGTAGAAGGTTTATAC----GGAAGTTAT------    753

BSNT_02353___    754 GGCAGCACTCATATTTACGTAAACCGAGGCCTCGGGATGACCAGGCTGCC    803
                       |||||| |..||.||.||.|||||.||.||.||||..||.||.|||||
BPUM_1302___y    754 --CAGCAC-CGCATCTATGTCAACCGCGGACTTGGGACAACAAGACTGCC    800

BSNT_02353___    804 TTTGCGGTTTCTGGCCAAGCCTGAAATCACTGTCTTCAC-----CTTAAA    848
                     ..|.||.|||.|.|||||.||||||.|.||..|.|||||     |||   
BPUM_1302___y    801 GCTTCGATTTTTAGCCAAACCTGAATTAACGTTTTTCACACTCTCTT---    847

BSNT_02353___    849 AAGCACAAATTAA-    861
                        |.|..|||.| 
BPUM_1302___y    848 ---CTCGCATTTAG    858


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