Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02350 and BPUM_1300
See
Amino acid alignment /
Visit
BSNT_02350 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_02350___ykuC.1.24716.seq
# -bsequence dna-align/BPUM_1300___ykuC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02350___ykuC-BPUM_1300___ykuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02350___ykuC-BPUM_1300___ykuC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02350___ykuC
# 2: BPUM_1300___ykuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1349
# Identity: 843/1349 (62.5%)
# Similarity: 843/1349 (62.5%)
# Gaps: 208/1349 (15.4%)
# Score: 2670.5
#
#
#=======================================
BSNT_02350___ 1 ATGGATATATTTAAAAATCGTAATTTTGTTCGTCTATTTTTCGCAGCACT 50
BPUM_1300___y 0 -------------------------------------------------- 0
BSNT_02350___ 51 CGCTTCTCAAATGGGCACGACAGTAGGCAACATGGCCTTTGCTTTTTTTT 100
|||||.||.||.||||.||
BPUM_1300___y 1 -------------------------------ATGGCGTTCGCCTTTTATT 19
BSNT_02350___ 101 TGCTGGACCGAT-----TCAGCAGCCAGCCTTCATATACGACCTTGGCGG 145
||||.||.| || |||.|||||.||| |||.|.||.||.||.|
BPUM_1300___y 20 TGCTCGATC-ATTTTAGTCATCAGCCCGCC----TATGCCACATTAGCAG 64
BSNT_02350___ 146 AGCTGATGTATTCTCTTCCGACCATATTTGTATTTCTGATCGTGGGAGTC 195
||||.||||||||.|||||.||.||.|||||.|||.|.||.||.||.|||
BPUM_1300___y 65 AGCTCATGTATTCACTTCCAACGATCTTTGTCTTTTTTATGGTCGGTGTC 114
BSNT_02350___ 196 GTCGCGGACCGGTTTGACAGAAAAAAGGTGGCAGAAAATTGTGATTGGAT 245
||.||.||.||.|||||..|.|||||.||.|||||.|||||.||||||||
BPUM_1300___y 115 GTAGCAGATCGTTTTGATCGTAAAAAAGTCGCAGAGAATTGCGATTGGAT 164
BSNT_02350___ 246 CAGAGCAGGCCTGAC---TGTCGTGCTTTTTTTCACTTTATTTACCGGCA 292
..||||.||.||||| |||..|..||.||.|.| ||||||| .|
BPUM_1300___y 165 ACGAGCTGGGCTGACGATTGTTTTATTTATTGTTA-TTTATTT-----TA 208
BSNT_02350___ 293 AT---ATTCCTCTTGTTTT-TTGTATCTTATTTATCAGAAGCGCTGTAAC 338
|| .||||.|||.|||| ||| |||||.|||||..||||.||..|.||
BPUM_1300___y 209 ATTCACTTCCACTTATTTTCTTG-ATCTTGTTTATTCGAAGTGCCATTAC 257
BSNT_02350___ 339 AAAGTTTTTCTTTCCGGCAGAAAACAGTTTGGTACAAGCCATTCTGCCGA 388
.|||||.||||.|||.||.|||..|..|.|.||.||.||.|||.|....|
BPUM_1300___y 258 GAAGTTCTTCTATCCAGCTGAAGCCTCTCTCGTTCAGGCGATTTTAAATA 307
BSNT_02350___ 389 AGGAGCATTATGCGAAAGCGGCAGGGCTT-AATCAGATGCTTTTTAGCAT 437
|.||.||.|||||.|||||.|| .||||| |||||.|||||.|||||..|
BPUM_1300___y 308 AAGATCAATATGCAAAAGCCGC-TGGCTTAAATCAAATGCTATTTAGTTT 356
BSNT_02350___ 438 TTTTATGGTGTTTGGAGTCGGTATAGGCGCATTTATGTACAACACCATCG 487
.||.|||||.|||||.||.||.||.||.||..|||||||.||.||.||.|
BPUM_1300___y 357 ATTCATGGTATTTGGCGTTGGAATCGGTGCGATTATGTATAAGACGATTG 406
BSNT_02350___ 488 GTATTGAAGGCGCCATTATTCTTGATTTTGTCAGCTTTATCATTTCCGGG 537
|..|..|.||.|||||||...|||||||..||||.|||||..|.||.||.
BPUM_1300___y 407 GACTCCACGGTGCCATTACGATTGATTTGATCAGTTTTATTGTGTCAGGC 456
BSNT_02350___ 538 CTGCTCATCCG--CAGCTGCCGGATTCCAAAAGAAGCCCGACAGCCAAAC 585
.|.||.||.|| || ||....|||||||..|||||.||.||||||||.
BPUM_1300___y 457 ATCCTGATTCGTTCA--TGTAACATTCCAATTGAAGCACGTCAGCCAAAT 504
BSNT_02350___ 586 GGTGCATTCA-GCTGGAGA---AAGACTTCTGTTAAGGATTCAA------ 625
|| .||..|| |||||||| |.||| .|||.||
BPUM_1300___y 505 GG-ACAAGCAGGCTGGAGAGGCATGAC----------CATTAAAACGTCT 543
BSNT_02350___ 626 -TAAATGACTTTAGAGAAGGCATCCTCTATATTTTAAAAAACAAATTGCT 674
||||.||.||||.|||||||||.||.||.|||.|||||||.||||||.|
BPUM_1300___y 544 CTAAAAGATTTTAAAGAAGGCATACTTTACATTATAAAAAATAAATTGTT 593
BSNT_02350___ 675 GGCATCTCTTATTTTTGGCTTCTTTATTTTTGGATTTGTCAATGGAGGAT 724
|||.|||.|.|||||||||||.|||.|||||||..|.||||||||.|.||
BPUM_1300___y 594 GGCTTCTTTAATTTTTGGCTTTTTTGTTTTTGGTCTAGTCAATGGCGCAT 643
BSNT_02350___ 725 TCGCCGTATTGCCGATGTTTACAATGAAATATGGATTGGCGCCTGACCGT 774
|.||.|||.|.|||||||||||||||||||||||..|..|.||.||||.|
BPUM_1300___y 644 TTGCTGTACTTCCGATGTTTACAATGAAATATGGCCTTTCACCGGACCAT 693
BSNT_02350___ 775 TATGAGTGGCATACGTCTGTATTTACGATCGCACTCGGGTTTGGGCTGCT 824
|.|||...||||||.||..|.|||||.||.|||.|.||....||.||.||
BPUM_1300___y 694 TTTGAACTGCATACATCGTTCTTTACAATTGCAATTGGTGCCGGTCTACT 743
BSNT_02350___ 825 GGCAGGCAGCGTAATCGGCACGATCATCT--CTAAAAAAGTGAAGCCGCA 872
.|..||||||.||||.|||.|.|| ||| ||||||||||.|||..|||
BPUM_1300___y 744 TGTTGGCAGCTTAATGGGCTCTAT--TCTTGCTAAAAAAGTAAAGATGCA 791
BSNT_02350___ 873 CTTTTTAATGTCGATACCGATTTTCATTGCAGGTTTGCTGATCTTCGTCC 922
.|.|.|.||||||.|.||.|||||..|||||||..|.|||||.||.||.|
BPUM_1300___y 792 ATATCTCATGTCGCTTCCAATTTTGGTTGCAGGCATTCTGATTTTTGTAC 841
BSNT_02350___ 923 TCGGCTACACCAATATTTTATGGGTGTATTACGCGGCAGCTTTTG-CACT 971
|.||.|.||||.|.|...|||||.|||.|||.|...||.|.|||| ||.|
BPUM_1300___y 842 TTGGTTCCACCCACACACTATGGTTGTTTTATGTCACATCATTTGTCATT 891
BSNT_02350___ 972 GGGA-ATGTGCATCGGACCGATCAACATTGCAATCGGAGGCTGGATGCCC 1020
||.| | |||||.||.||..|||||||||..||.||.||||||.||||.
BPUM_1300___y 892 GGTACA--TGCATTGGCCCAGTCAACATTGTCATTGGCGGCTGGCTGCCA 939
BSNT_02350___ 1021 AAAATTGTTCATCCAAAACTGATGGGACGTGTAAG-CGGCATGCAG---G 1066
|.|||.||.||.||.....||||||||||||| | |||..|| | |
BPUM_1300___y 940 AGAATCGTCCACCCTCGTTTGATGGGACGTGT--GTCGGGTTG--GGTTG 985
BSNT_02350___ 1067 ACCCTTTTATGATGTTTGCACAGTCTTTGACACTTGGCTTAGTCGCGCTG 1116
|.||..|||..||||||||.||.||..|||||.|.||.||..|.|||.|.
BPUM_1300___y 986 ATCCACTTACCATGTTTGCTCAATCCATGACATTAGGTTTGATTGCGGTA 1035
BSNT_02350___ 1117 TTATTCCCTAAGTTTGTTTCAAACATTGATTATCTTTATTACGGCATGGG 1166
.|.||.||.||..|..||.|||||.||..||||.||||||||||.|||||
BPUM_1300___y 1036 CTTTTTCCAAAACTCATTACAAACGTTTCTTATATTTATTACGGAATGGG 1085
BSNT_02350___ 1167 TGTTATTATCCTGCTCGTTTTTATTTTTTATTTTATTGCACTGCCAAAAT 1216
.||||||||..|.||||||||..|||||||.||..||.||||||||||.|
BPUM_1300___y 1086 CGTTATTATTTTACTCGTTTTCCTTTTTTACTTCTTTACACTGCCAAAGT 1135
BSNT_02350___ 1217 ACAGTGCTCAG----GCT------------GTG------GAAGTGAATGT 1244
.||| ||| ||| ||| |||.|.||.|.
BPUM_1300___y 1136 TCAG----CAGAGAAGCTGATGACTTAGACGTGCAGCGTGAACTTAAAGG 1181
BSNT_02350___ 1245 TCAGGAAGCATTTCAAGAACAGCCGAAAAAGAAGGCAAGATCTGTATAA 1293
|||||.||| .|||.||
BPUM_1300___y 1182 TCAGGGAGC---GCAATAA------------------------------ 1197
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.