Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02349 and BPUM_1297

See Amino acid alignment / Visit BSNT_02349 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:49
# Commandline: needle
#    -asequence dna-align/BSNT_02349___ykyB.1.24716.seq
#    -bsequence dna-align/BPUM_1297___ykyB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02349___ykyB-BPUM_1297___ykyB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02349___ykyB-BPUM_1297___ykyB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02349___ykyB
# 2: BPUM_1297___ykyB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 471
# Identity:     340/471 (72.2%)
# Similarity:   340/471 (72.2%)
# Gaps:          15/471 ( 3.2%)
# Score: 1143.0
# 
#
#=======================================

BSNT_02349___      1 ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCT     50
                     ||||||||..||||..||||.|||||..|..|.||.||.|.||||||..|
BPUM_1297___y      1 ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACAT     50

BSNT_02349___     51 TTCAAAAGCAGTTTACACTGTGAACCGCCATGCAAAAACCGCCCCCAACC    100
                     ..|||||||..||||.|||||.|||||||||||.||||||||.||.||.|
BPUM_1297___y     51 CGCAAAAGCCATTTATACTGTTAACCGCCATGCTAAAACCGCACCAAATC    100

BSNT_02349___    101 CTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAA    150
                     |.||||..||.|||||..||||||||||.||..||||.||.||..|..||
BPUM_1297___y    101 CCAAATTTCTTTATCTTTTGAAAAAACGTGCGCTGCAGAAACTATTGCAA    150

BSNT_02349___    151 GAAGGTAAAGGAAAGAAAA-TAGGGCTTCATTTTTCAAAAAATCCAAGGT    199
                     ||||||||||| ||||||| |.||.||.|||||.||.||.|||||.|..|
BPUM_1297___y    151 GAAGGTAAAGG-AAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAAT    199

BSNT_02349___    200 TCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGACTACTATTTT    249
                     ..||.|||||.||.||.||||||||.||...|||.|||||.||.||||||
BPUM_1297___y    200 ATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGATTATTATTTT    249

BSNT_02349___    250 CACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTAC    299
                     |||.||||.|||||||||||||||||||||..|.|.||.||.||||| |.
BPUM_1297___y    250 CACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGG-AA    298

BSNT_02349___    300 ACTT-AATCAATCGTACCGAAATCCTAAAGCTCAAATGTCTTTAACAAAA    348
                     |.|| ||||||||.||.||.||.||.|||||..|.|||||.||||....|
BPUM_1297___y    299 ATTTAAATCAATCATATCGCAACCCGAAAGCGAATATGTCATTAAACCGA    348

BSNT_02349___    349 GCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGT    398
                     ||.||.||.||..|.|||...||||||||..|.||||||||.|  |||..
BPUM_1297___y    349 GCAAAGCAACTGCTTCAAACGTATGTCGGTTTAAAAGAAAAAC--CTACC    396

BSNT_02349___    399 GCC---AAATCGCCAGCAGCCAGCTTA-CCATAAACCGGTCTTTAAAAAA    444
                     |||   |||    ||..|..||..||| .|| ||.||.|||||.|||..|
BPUM_1297___y    397 GCCACAAAA----CAAAAATCACATTATACA-AAGCCCGTCTTCAAACGA    441

BSNT_02349___    445 CTTGGCGAGAGTTACTTTTAA    465
                     ||.||.||.|||||.||||||
BPUM_1297___y    442 CTCGGGGAAAGTTATTTTTAA    462


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