Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02344 and BPUM_1291
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_02344___patA.1.24716.seq
# -bsequence dna-align/BPUM_1291___patA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02344___patA-BPUM_1291___patA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02344___patA-BPUM_1291___patA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02344___patA
# 2: BPUM_1291___patA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1223
# Identity: 843/1223 (68.9%)
# Similarity: 843/1223 (68.9%)
# Gaps: 94/1223 ( 7.7%)
# Score: 2790.5
#
#
#=======================================
BSNT_02344___ 1 ATGGAACATTTGCTGAATCCGAAAGCAAGAGAGATCGAAATTTCAGGAAT 50
|||||.||||||||||||||.|.||.||..||.||.|||||||||||.||
BPUM_1291___p 1 ATGGAGCATTTGCTGAATCCAAGAGTAAAGGATATTGAAATTTCAGGCAT 50
BSNT_02344___ 51 ACGCAAATTCTCGAATCTTGTAGCCCAACACGAAGACGTCATTTCACTTA 100
.||.|.|||.||.|||||.|||.|...|.|.||.||.|||.||||..|.|
BPUM_1291___p 51 TCGAACATTTTCAAATCTCGTATCGTCATATGAGGATGTCGTTTCTTTGA 100
BSNT_02344___ 101 CAATCGGCCAGCCTGATTTTTTCACACCGCATCATGTGAAAGCTGCCGCA 150
|.||.||||||||.|||||||..||.|||||||||||.|||.|.||.||.
BPUM_1291___p 101 CGATAGGCCAGCCCGATTTTTATACGCCGCATCATGTCAAAACAGCTGCC 150
BSNT_02344___ 151 AAAAAAGCCATTGATGAAAACGTGACGTCATATACTCCGAATGCCGGCTA 200
|||..|||.|||||.||.||..|.||.||.||.||.|..||.||.||.|.
BPUM_1291___p 151 AAAGCAGCGATTGACGAGAATTTCACTTCGTACACACACAACGCTGGTTT 200
BSNT_02344___ 201 CCTGGAGCTGAGACAAGCTGTGCAGCTTTATATGAAGAAAAAAGCGGATT 250
|||.|||||.||||||||..|.||||..||.||.|||||.||||...||.
BPUM_1291___p 201 CCTAGAGCTAAGACAAGCGATCCAGCACTACATCAAGAAGAAAGTCAATC 250
BSNT_02344___ 251 TCAACTATGATGCTGAATCTGAAATTATCATCACAACAGGCGCAAGCCAA 300
|..|.|||||.|||||.||.||.||.||..|.||.|||||.||.||.|||
BPUM_1291___p 251 TTGATTATGAGGCTGAGTCGGAGATCATTGTAACGACAGGTGCTAGTCAA 300
BSNT_02344___ 301 GCCATTGATGCTGCATTCCGGACGATTTTATCTCCCGGTGATGAAGTCAT 350
||.|||||||||||.||.||.||.|||||.||....|||||.|||||.||
BPUM_1291___p 301 GCGATTGATGCTGCGTTTCGAACCATTTTGTCAGAGGGTGACGAAGTGAT 350
BSNT_02344___ 351 TATGCCAGGGCCTATTTATCCAGGCTATGAACCTATTAT--CAATTTGTG 398
|.|.||.||.|||.|.||.||.|||||||||||.||.|| .|| ||||
BPUM_1291___p 351 TTTACCTGGACCTGTCTACCCTGGCTATGAACCGATCATTCGAA--TGTG 398
BSNT_02344___ 399 CGGGGCCAAGCCTGT-CATTGTTGATACTACG-----TCACACGGCTTTA 442
|||||..|||||.|| || |.|||||||.||| | |||||||
BPUM_1291___p 399 CGGGGGGAAGCCAGTACA-TATTGATACAACGAATGCT-----GGCTTTA 442
BSNT_02344___ 443 AGCTTACCGCCCGGCTGATTGAAGACGCTCTGACACCCAACACCAAGTGT 492
|..|.|..|||..|||||||||.||.||..|.||....||.||.||||||
BPUM_1291___p 443 AATTAAATGCCAAGCTGATTGAGGATGCATTAACGGAAAATACAAAGTGT 492
BSNT_02344___ 493 GTCGTGCTTCCTTATCCGTCAAATCCTACCGGCGTGACTTTATCTGAAGA 542
||.||.|||||||||||.|||||.||.||.||.||.||..|.||.|||||
BPUM_1291___p 493 GTTGTTCTTCCTTATCCTTCAAACCCAACTGGTGTCACGCTTTCAGAAGA 542
BSNT_02344___ 543 AGAACTGAAA-AGCATTG--CAGC-CCTTTTAAAAGGCAGAAATGTCTTC 588
||||.||||| || |||| |||| .||| .||||.|.|.||.||||.
BPUM_1291___p 543 AGAATTGAAAGAG-ATTGCCCAGCTACTT---GAAGGGAAAGATATCTTT 588
BSNT_02344___ 589 GTATTGTCCGATGAAATATACAGTGAATTAACATATGACAGACCGCATTA 638
.|.||.|||||||||||.||.||.||..|.||||.||||.|.||||||.|
BPUM_1291___p 589 ATTTTATCCGATGAAATCTATAGCGAGCTGACATTTGACCGGCCGCATCA 638
BSNT_02344___ 639 CTCCATCGC---------AAACCATTTGCGGGATCAAACAATTGTCATTA 679
.||.||||| ||| |||.||.||.|||||.||||
BPUM_1291___p 639 TTCGATCGCTTCTTTCTTAAA---------GGAACAGACCATTGTGATTA 679
BSNT_02344___ 680 ACGGCTTGTCAAAATCACACAGCATGACCGGTTGGAGAATTGGATTTTTA 729
|.||..||||.||.||.||.|||||||||||||||||||||||.||||||
BPUM_1291___p 680 ATGGACTGTCTAAGTCTCATAGCATGACCGGTTGGAGAATTGGCTTTTTA 729
BSNT_02344___ 730 TTTGCACCGAAAGAC----ATTGCAAAGCACATTTTAAAGGTTCATCAAT 775
|||||..| || | |||||.||.||..|.|||||.||.|||||||
BPUM_1291___p 730 TTTGCTTC---AG-CTCCAATTGCTAAACATGTATTAAAAGTACATCAAT 775
BSNT_02344___ 776 ACAATGTATCGTGCGCCTCATCCATTTCTCAAAAAGCCGCGCTTGAAGCT 825
|.||.||.||.||.|||||..|..|.||.|||||.||.||.|||||||||
BPUM_1291___p 776 ATAACGTGTCTTGTGCCTCGGCTGTCTCACAAAAGGCGGCACTTGAAGCT 825
BSNT_02344___ 826 GTCACAAACGGCTTTGACGATGCATTGATTATGAGAGAACAATACAAAAA 875
||.|||||.||..|.||.||||||.|.||.||||||||.|||||.||.||
BPUM_1291___p 826 GTGACAAATGGTGTGGATGATGCACTTATCATGAGAGAGCAATATAAGAA 875
BSNT_02344___ 876 ACGTCTCGACTATGTTTATGACCGTCTTGTTTCCATGGGACTTGACGTAG 925
|.|.|||||.|||||||||||.||.||..||||.|||||.|||...||..
BPUM_1291___p 876 AAGACTCGATTATGTTTATGATCGGCTCATTTCTATGGGGCTTCCGGTCA 925
BSNT_02344___ 926 TTAAACCGTCCGGTGCGTTTTATATCTTCCCTTCTATTAAATCATTTGGA 975
|||||||.||.||.||.||||||||.||.||.||.|||.||||.|||||.
BPUM_1291___p 926 TTAAACCTTCTGGCGCTTTTTATATTTTTCCATCCATTGAATCGTTTGGG 975
BSNT_02344___ 976 ATGACTTCATTTGATTTTAGTATGGCTCTTTTGGAA-----GACGCTGG- 1019
||||.|||.|||||||||.||||||..||.||.||| .|.|||||
BPUM_1291___p 976 ATGAGTTCCTTTGATTTTTGTATGGAGCTGTTAGAAAGTACAAGGCTGGC 1025
BSNT_02344___ 1020 TGTGGCACTCGTGCCGGG-CAGCTCATTCTCAACATATGGTGA-AGGATA 1067
|||.|.|| |.||| |.||| |||||..||...||.|| ||| ||
BPUM_1291___p 1026 TGTTGTAC-----CAGGGTCTGCT--TTCTCTCCACTCGGCGAGAGG-TA 1067
BSNT_02344___ 1068 TGTAAGGCTGTCTTTTGCATGCTCAATGGACACGCTGAGAGAAGGCCTGG 1117
|||..|.||.||.|.|||.|..|||.|.||.||.||||.||||||.||.|
BPUM_1291___p 1068 TGTGCGTCTATCCTATGCTTATTCACTTGAAACACTGAAAGAAGGACTTG 1117
BSNT_02344___ 1118 ACCGTTTAGAATTATTTGTATTAAAAAAACGTGAAGCAATGCAGACGATA 1167
|.||..|||||..|||.||..|..|||||||| .|.||.||
BPUM_1291___p 1118 ATCGCCTAGAACAATTCGTTCTTGAAAAACGT---TCCATTCA------- 1157
BSNT_02344___ 1168 AACAACGGCGTTTAA-------- 1182
|||||
BPUM_1291___p 1158 ----------TTTAACAGACTGA 1170
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