Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02344 and BPUM_1291

See Amino acid alignment / Visit BSNT_02344 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:49
# Commandline: needle
#    -asequence dna-align/BSNT_02344___patA.1.24716.seq
#    -bsequence dna-align/BPUM_1291___patA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02344___patA-BPUM_1291___patA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02344___patA-BPUM_1291___patA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02344___patA
# 2: BPUM_1291___patA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1223
# Identity:     843/1223 (68.9%)
# Similarity:   843/1223 (68.9%)
# Gaps:          94/1223 ( 7.7%)
# Score: 2790.5
# 
#
#=======================================

BSNT_02344___      1 ATGGAACATTTGCTGAATCCGAAAGCAAGAGAGATCGAAATTTCAGGAAT     50
                     |||||.||||||||||||||.|.||.||..||.||.|||||||||||.||
BPUM_1291___p      1 ATGGAGCATTTGCTGAATCCAAGAGTAAAGGATATTGAAATTTCAGGCAT     50

BSNT_02344___     51 ACGCAAATTCTCGAATCTTGTAGCCCAACACGAAGACGTCATTTCACTTA    100
                     .||.|.|||.||.|||||.|||.|...|.|.||.||.|||.||||..|.|
BPUM_1291___p     51 TCGAACATTTTCAAATCTCGTATCGTCATATGAGGATGTCGTTTCTTTGA    100

BSNT_02344___    101 CAATCGGCCAGCCTGATTTTTTCACACCGCATCATGTGAAAGCTGCCGCA    150
                     |.||.||||||||.|||||||..||.|||||||||||.|||.|.||.||.
BPUM_1291___p    101 CGATAGGCCAGCCCGATTTTTATACGCCGCATCATGTCAAAACAGCTGCC    150

BSNT_02344___    151 AAAAAAGCCATTGATGAAAACGTGACGTCATATACTCCGAATGCCGGCTA    200
                     |||..|||.|||||.||.||..|.||.||.||.||.|..||.||.||.|.
BPUM_1291___p    151 AAAGCAGCGATTGACGAGAATTTCACTTCGTACACACACAACGCTGGTTT    200

BSNT_02344___    201 CCTGGAGCTGAGACAAGCTGTGCAGCTTTATATGAAGAAAAAAGCGGATT    250
                     |||.|||||.||||||||..|.||||..||.||.|||||.||||...||.
BPUM_1291___p    201 CCTAGAGCTAAGACAAGCGATCCAGCACTACATCAAGAAGAAAGTCAATC    250

BSNT_02344___    251 TCAACTATGATGCTGAATCTGAAATTATCATCACAACAGGCGCAAGCCAA    300
                     |..|.|||||.|||||.||.||.||.||..|.||.|||||.||.||.|||
BPUM_1291___p    251 TTGATTATGAGGCTGAGTCGGAGATCATTGTAACGACAGGTGCTAGTCAA    300

BSNT_02344___    301 GCCATTGATGCTGCATTCCGGACGATTTTATCTCCCGGTGATGAAGTCAT    350
                     ||.|||||||||||.||.||.||.|||||.||....|||||.|||||.||
BPUM_1291___p    301 GCGATTGATGCTGCGTTTCGAACCATTTTGTCAGAGGGTGACGAAGTGAT    350

BSNT_02344___    351 TATGCCAGGGCCTATTTATCCAGGCTATGAACCTATTAT--CAATTTGTG    398
                     |.|.||.||.|||.|.||.||.|||||||||||.||.||  .||  ||||
BPUM_1291___p    351 TTTACCTGGACCTGTCTACCCTGGCTATGAACCGATCATTCGAA--TGTG    398

BSNT_02344___    399 CGGGGCCAAGCCTGT-CATTGTTGATACTACG-----TCACACGGCTTTA    442
                     |||||..|||||.|| || |.|||||||.|||     |     |||||||
BPUM_1291___p    399 CGGGGGGAAGCCAGTACA-TATTGATACAACGAATGCT-----GGCTTTA    442

BSNT_02344___    443 AGCTTACCGCCCGGCTGATTGAAGACGCTCTGACACCCAACACCAAGTGT    492
                     |..|.|..|||..|||||||||.||.||..|.||....||.||.||||||
BPUM_1291___p    443 AATTAAATGCCAAGCTGATTGAGGATGCATTAACGGAAAATACAAAGTGT    492

BSNT_02344___    493 GTCGTGCTTCCTTATCCGTCAAATCCTACCGGCGTGACTTTATCTGAAGA    542
                     ||.||.|||||||||||.|||||.||.||.||.||.||..|.||.|||||
BPUM_1291___p    493 GTTGTTCTTCCTTATCCTTCAAACCCAACTGGTGTCACGCTTTCAGAAGA    542

BSNT_02344___    543 AGAACTGAAA-AGCATTG--CAGC-CCTTTTAAAAGGCAGAAATGTCTTC    588
                     ||||.||||| || ||||  |||| .|||   .||||.|.|.||.||||.
BPUM_1291___p    543 AGAATTGAAAGAG-ATTGCCCAGCTACTT---GAAGGGAAAGATATCTTT    588

BSNT_02344___    589 GTATTGTCCGATGAAATATACAGTGAATTAACATATGACAGACCGCATTA    638
                     .|.||.|||||||||||.||.||.||..|.||||.||||.|.||||||.|
BPUM_1291___p    589 ATTTTATCCGATGAAATCTATAGCGAGCTGACATTTGACCGGCCGCATCA    638

BSNT_02344___    639 CTCCATCGC---------AAACCATTTGCGGGATCAAACAATTGTCATTA    679
                     .||.|||||         |||         |||.||.||.|||||.||||
BPUM_1291___p    639 TTCGATCGCTTCTTTCTTAAA---------GGAACAGACCATTGTGATTA    679

BSNT_02344___    680 ACGGCTTGTCAAAATCACACAGCATGACCGGTTGGAGAATTGGATTTTTA    729
                     |.||..||||.||.||.||.|||||||||||||||||||||||.||||||
BPUM_1291___p    680 ATGGACTGTCTAAGTCTCATAGCATGACCGGTTGGAGAATTGGCTTTTTA    729

BSNT_02344___    730 TTTGCACCGAAAGAC----ATTGCAAAGCACATTTTAAAGGTTCATCAAT    775
                     |||||..|   || |    |||||.||.||..|.|||||.||.|||||||
BPUM_1291___p    730 TTTGCTTC---AG-CTCCAATTGCTAAACATGTATTAAAAGTACATCAAT    775

BSNT_02344___    776 ACAATGTATCGTGCGCCTCATCCATTTCTCAAAAAGCCGCGCTTGAAGCT    825
                     |.||.||.||.||.|||||..|..|.||.|||||.||.||.|||||||||
BPUM_1291___p    776 ATAACGTGTCTTGTGCCTCGGCTGTCTCACAAAAGGCGGCACTTGAAGCT    825

BSNT_02344___    826 GTCACAAACGGCTTTGACGATGCATTGATTATGAGAGAACAATACAAAAA    875
                     ||.|||||.||..|.||.||||||.|.||.||||||||.|||||.||.||
BPUM_1291___p    826 GTGACAAATGGTGTGGATGATGCACTTATCATGAGAGAGCAATATAAGAA    875

BSNT_02344___    876 ACGTCTCGACTATGTTTATGACCGTCTTGTTTCCATGGGACTTGACGTAG    925
                     |.|.|||||.|||||||||||.||.||..||||.|||||.|||...||..
BPUM_1291___p    876 AAGACTCGATTATGTTTATGATCGGCTCATTTCTATGGGGCTTCCGGTCA    925

BSNT_02344___    926 TTAAACCGTCCGGTGCGTTTTATATCTTCCCTTCTATTAAATCATTTGGA    975
                     |||||||.||.||.||.||||||||.||.||.||.|||.||||.|||||.
BPUM_1291___p    926 TTAAACCTTCTGGCGCTTTTTATATTTTTCCATCCATTGAATCGTTTGGG    975

BSNT_02344___    976 ATGACTTCATTTGATTTTAGTATGGCTCTTTTGGAA-----GACGCTGG-   1019
                     ||||.|||.|||||||||.||||||..||.||.|||     .|.||||| 
BPUM_1291___p    976 ATGAGTTCCTTTGATTTTTGTATGGAGCTGTTAGAAAGTACAAGGCTGGC   1025

BSNT_02344___   1020 TGTGGCACTCGTGCCGGG-CAGCTCATTCTCAACATATGGTGA-AGGATA   1067
                     |||.|.||     |.||| |.|||  |||||..||...||.|| ||| ||
BPUM_1291___p   1026 TGTTGTAC-----CAGGGTCTGCT--TTCTCTCCACTCGGCGAGAGG-TA   1067

BSNT_02344___   1068 TGTAAGGCTGTCTTTTGCATGCTCAATGGACACGCTGAGAGAAGGCCTGG   1117
                     |||..|.||.||.|.|||.|..|||.|.||.||.||||.||||||.||.|
BPUM_1291___p   1068 TGTGCGTCTATCCTATGCTTATTCACTTGAAACACTGAAAGAAGGACTTG   1117

BSNT_02344___   1118 ACCGTTTAGAATTATTTGTATTAAAAAAACGTGAAGCAATGCAGACGATA   1167
                     |.||..|||||..|||.||..|..||||||||   .|.||.||       
BPUM_1291___p   1118 ATCGCCTAGAACAATTCGTTCTTGAAAAACGT---TCCATTCA-------   1157

BSNT_02344___   1168 AACAACGGCGTTTAA--------   1182
                               |||||        
BPUM_1291___p   1158 ----------TTTAACAGACTGA   1170


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