Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02340 and BPUM_1289
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_02340___ykuA.1.24716.seq
# -bsequence dna-align/BPUM_1289.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02340___ykuA-BPUM_1289.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02340___ykuA-BPUM_1289.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02340___ykuA
# 2: BPUM_1289
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2293
# Identity: 1437/2293 (62.7%)
# Similarity: 1437/2293 (62.7%)
# Gaps: 341/2293 (14.9%)
# Score: 4066.0
#
#
#=======================================
BSNT_02340___ 1 --GTGACTGAAATAGGACGTGAA-------CCAA--AGAAAAAGAGCAA- 38
|.||..||||.|| |.|.|| ||.| |||||||.|.|||
BPUM_1289 1 GTGGGAGAGAAACAG--CATCAAGGTGGTGCCGAGCAGAAAAAAATCAAG 48
BSNT_02340___ 39 ---AGGAAACAGAGCAATCAGAATGAACCTTTTTTTCCTAGCTGTCTTT- 84
.|||| .||....||.||.||.||.||||||.|.|||||||||
BPUM_1289 49 CGCCGGAA----CGCCTGGAGGATTAATCTCTTTTTCTTCGCTGTCTTTA 94
BSNT_02340___ 85 GTTCTATTCACTGCATTAATTTTTAAGCTCGGGGTTGTTCAAATTGTTGA 134
||| ||||..|||.|.|..|..|.|||||.||.||..|.||.||.||..|
BPUM_1289 95 GTT-TATTTGCTGTACTTGTGATCAAGCTTGGTGTGCTGCAGATCGTCAA 143
BSNT_02340___ 135 AGGCGAACAGCATGAAGAAG-ACGCTGAGAAATCAAATGCA------AAA 177
.||.||..|..|| ||.||| |.|| |||.|.|| || |||
BPUM_1289 144 TGGTGAGGATTAT-AAAAAGCAGGC----AAACCGAA--CAGAGGTCAAA 186
BSNT_02340___ 178 ACAGCTTACTATCCTGCGCCTCGCGGGAAGATGTACGAC---AGAAATCA 224
|||||.|..||.||..|.||..|.||.||.|||||.||| ||| .
BPUM_1289 187 ACAGCATCATACCCGTCTCCGAGAGGAAAAATGTATGACGCGAGA----G 232
BSNT_02340___ 225 GAA-AGTTGCTGTCGACAACCAGAGCGTTCCAGAAATTGTGTATGTATCA 273
||| |||.|.|||.||.||..|.||.||.||.|..||.||.|||
BPUM_1289 233 GAAGAGTCGTTGTTGATAATGAAAGTGTACCTGCCATCGTTTAT------ 276
BSNT_02340___ 274 ACATCTAGCACA--------AAAACAGAAGATAAAATCAAAACAGC--GA 313
||||| || |.| |||.|.||.|||||.||.|||..||| ||
BPUM_1289 277 ACATC-AG-AAAGCGGTGTGAAAGCGGAGGATAAGATTAAAGTAGCAAGA 324
BSNT_02340___ 314 AGCGGCTTGCTTCTTTCATTCATATTGATACCGAATTTTTGAAG-GAAAG 362
| ..|||||..|||..||..|.||.|||| |.|||||||.||| ||..|
BPUM_1289 325 A--AACTTGCGACTTATATAAAAATGGATA-CTAATTTTTTAAGAGAGCG 371
BSNT_02340___ 363 GGATCTTCGTGATTACTGGATCGC-AGCTCATCCGAAAAAAGCCG--CCG 409
.|||.||||.||||..|||.|.|| ||| |||||||||.||||.| ..|
BPUM_1289 372 TGATATTCGAGATTTTTGGCTGGCAAGC-CATCCGAAAGAAGCGGATAAG 420
BSNT_02340___ 410 CTCTGCTTAAGGAATCAG----AAAGCAATCTGAAAGGAGACCAGGCTTA 455
|||...|.|| ||.||| |||| ||.||.||||.|.|..|.|..||
BPUM_1289 421 CTCATTTCAA--AAGCAGAGCAAAAG-AAACTTAAAGCAAAAGATGTCTA 467
BSNT_02340___ 456 CAAGCTTCAAATAGAGCGTGTTCCGGATCAAGAATTAAAGGCTATTCAGC 505
...|||.|||.|.|||||.||.||..|..||||..|.|||.|.||..|..
BPUM_1289 468 TCCGCTCCAAGTCGAGCGCGTGCCTAAGGAAGAGGTCAAGTCGATCGAAA 517
BSNT_02340___ 506 AAGATGACGAAGAAATGGAAACTGCTGCGATATATACAAGGTTTTCAAGC 555
||.|||..||.||||..|.|..|||.|||||.|||...||||||.||.||
BPUM_1289 518 AAAATGCAGAGGAAAAAGCAGTTGCAGCGATCTATCGCAGGTTTACAGGC 567
BSNT_02340___ 556 GGAAATGCTTACGAACCTCAAATCGTAAAGGCAATGAATCCAAAT-AAGA 604
|||.||||.|..||.|||||||||||.||.||||||.|.|||||| ||||
BPUM_1289 568 GGATATGCCTTTGAGCCTCAAATCGTGAAAGCAATGGACCCAAATGAAGA 617
BSNT_02340___ 605 GCAATAGCAATGGA--AAAAACGGAGCGCTGCTT-----GATGAGAAGAA 647
|.||.| |..||| ||||| |.||||| ||||| ||.||
BPUM_1289 618 GAAAAA--AGGGGACGAAAAA------GTTGCTTTACTCGATGA-AACAA 658
BSNT_02340___ 648 AA-ACTCCTCGCAAAGACCAAAAAATGAC---TTAACATATGATGAAATT 693
|| |.||...|||.| ||..|..||.| ||.||.|||||.||.|||
BPUM_1289 659 AAGAGTCTAAGCAGA---CATCATCTGTCAGTTTGACCTATGAAGAGATT 705
BSNT_02340___ 694 TCCATTGTTTCTGAGCATTTAGAAGAACTTCCGGGAATCGATATCGTAAA 743
||..||||.||.||||||.|.||.|||||.||.||..|..||.||.|.||
BPUM_1289 706 TCACTTGTGTCAGAGCATCTTGATGAACTACCTGGTGTGAATGTCATCAA 755
BSNT_02340___ 744 CGATTGGACACGAAAATATCCTTATGACAAAACCCTTTATTCTGTTTTCG 793
.|||||||||.||||||||||||||||.|||||.||||||..|||..|.|
BPUM_1289 756 TGATTGGACAAGAAAATATCCTTATGAAAAAACTCTTTATAATGTACTTG 805
BSNT_02340___ 794 GGGGCGTCACGACACCTGATCAGGGCCTGCTGAGCGACCGGAAAGATTTC 843
|.||.||.||.|||||.||.|||||..|..|.|..||.||..||||||.|
BPUM_1289 806 GCGGTGTGACCACACCAGAGCAGGGGATTATCAAAGAGCGTGAAGATTAC 855
BSNT_02340___ 844 TACTTAACAAGAGGCTATGCGAATAATGACAGGGTGGGAAAAAGTTATTT 893
||..|..||||||||||..|...|||||||.||||.|||||.||.|||||
BPUM_1289 856 TATATGGCAAGAGGCTACTCACGTAATGACCGGGTAGGAAAGAGCTATTT 905
BSNT_02340___ 894 AGAGTATCAATATGAAGAATATTTAAATTCGCATAAAGAAAAAGTG---- 939
||||||||||||.||.||.|.|.|.||..| |||.||||.|
BPUM_1289 906 AGAGTATCAATACGAGGATTTTCTGAACCC------AGAGAAAGCGACCG 949
BSNT_02340___ 940 ----GAATACGTAG----------AA------GAT--AATAAA--GGAAA 965
|.|||||.|| || ||| |||.|| |||
BPUM_1289 950 TTCAGTATACGCAGGTTGGCGGGAAACTGCTCGATGAAATCAAGCGGA-- 997
BSNT_02340___ 966 TGTCGTCAGCCAAAAAACCATTGATAAGGGCAGCAGGGGATACGATCTT- 1014
||| ||||.| |.||.|||...||||||
BPUM_1289 998 ------CAG----------------AAGGAC-GAAGAGGACTTGATCTTG 1024
BSNT_02340___ 1015 CAGCTTTCTTTTGACATGGAGCTTCAGGCAAAG---GTAGAAAAGATCAT 1061
|| ||..|.|||||.||||||||.|| |||| ||.||.||.|||.|
BPUM_1289 1025 CA-CTCACATTTGATATGGAGCTGCA---AAAGGAAGTCGACAAAATCGT 1070
BSNT_02340___ 1062 TGAAGAAGAAGTAAGAAACAGC-CGTGCACGCGGAAATTACATGCTTGAC 1110
||||..|||..|||| |.|.|| .||||| .||||.||.|||.|.||.
BPUM_1289 1071 TGAATCAGAGCTAAG-ATCCGCTAGTGCA---AGAAACTATATGATGGAT 1116
BSNT_02340___ 1111 AGAGCCTTTGCCGTAATGATGGACCCGAATAACGGCGATATTTTATCAAT 1160
.|.|||||||..||.|||||||||||.||.|..||.|||.||.|..|.||
BPUM_1289 1117 CGTGCCTTTGTTGTGATGATGGACCCTAACACAGGTGATGTTCTCGCGAT 1166
BSNT_02340___ 1161 GGCAGGGAAAAAGATAGATTTAAAAACCAACAAAATTGA------AGATT 1204
|.|||||||.||.||.|| |..||.| || |||||
BPUM_1289 1167 GTCAGGGAAGAAAATGGA---------CGGCAGA---GACGTCACAGATT 1204
BSNT_02340___ 1205 ATGCGATAGGGGCATTTACCACCCAATATGAAATGGGATCAGCAGTAAAG 1254
||||.||.||..|||||||.|||||.|||||||||||.||.|.|||.||.
BPUM_1289 1205 ATGCCATCGGAACATTTACGACCCAGTATGAAATGGGCTCTGTAGTCAAA 1254
BSNT_02340___ 1255 GGGGCCACCGTGCTAGCCGGCTATCAGGACGGAATCCCGCATTATAAATA 1304
||.|||||.||.||.|.|||.||||||||||||||..||||..|..|||.
BPUM_1289 1255 GGAGCCACAGTACTCGGCGGTTATCAGGACGGAATGTCGCACAACCAATC 1304
BSNT_02340___ 1305 TTTTGTTGATACACCTCTTTATTTAGCAGGATACGGTAACAAA-CCGAAG 1353
.|.|.|.||||||||.||.|.|||.||||||...|| ||| ||.|||
BPUM_1289 1305 CTATATGGATACACCGCTCTTTTTTGCAGGAAGTGG----AAAGCCCAAG 1350
BSNT_02340___ 1354 AAATCCTAC-ATGAACATGGG-------AACCATCAATGAATTAACCGCT 1395
||.||.||| |.||.| |||| |||.|||...|| ||.
BPUM_1289 1351 AAGTCTTACAACGATC-TGGGGTGGGTCAACGATCTGCGA-------GCA 1392
BSNT_02340___ 1396 CTGCAAAAAAGTTCAAACGTATATATGTTTAATGTTGCCATGCACATTGC 1445
||.|||||||||||.|||||.|||||||||.||||.||.|||...||.||
BPUM_1289 1393 CTCCAAAAAAGTTCGAACGTCTATATGTTTCATGTAGCGATGAGAATGGC 1442
BSNT_02340___ 1446 CGGTGTCACATA-CAAGCCGCATGGACCTCTTCCTGC-TGACCAGAAGGA 1493
.|||.|.||.|| ||| |.|.||||.||..|.||.|| .||||.| ||.|
BPUM_1289 1443 AGGTATTACCTATCAA-CAGAATGGTCCATTACCAGCAAGACCTG-AGCA 1490
BSNT_02340___ 1494 TTTAAACAAAATGAGAAATTACTACAGC-CAATTTGGCCTGGGAGTAAAG 1542
|.|..|.|||||||||||.||||| .|| |||||.||.||.||.||.||.
BPUM_1289 1491 TCTGCAAAAAATGAGAAACTACTA-TGCGCAATTCGGTCTTGGCGTGAAA 1539
BSNT_02340___ 1543 ACAGGTATCGATCTTCCGCAGGAATCAGCCGGAATGCAAACTACACCTGA 1592
|||||.||||||.|.||||||||||||..|||.|||||.|| |||.|.||
BPUM_1289 1540 ACAGGGATCGATTTGCCGCAGGAATCAAGCGGGATGCAGAC-ACATCCGA 1588
BSNT_02340___ 1593 TG-CGGTAGGGGGGTTAATTTTAGACTTG-----GCCATTGGACAATACG 1636
.| ||||.||.|| |.|||| .||.| ||.|||||.||.||.|
BPUM_1289 1589 AGACGGTCGGCGG---ACTTTT--GCTCGATGAAGCAATTGGCCAGTATG 1633
BSNT_02340___ 1637 ATACATATACACCGCTTCAAATGGCACAGTACATCTCATCAATTGCCAAT 1686
|.||.|||||||||||||||.||||.||||||||.||..|.||.||||||
BPUM_1289 1634 ACACGTATACACCGCTTCAAGTGGCGCAGTACATGTCGACGATCGCCAAT 1683
BSNT_02340___ 1687 GGGGGGTACCGCATTCAGCCAAGAATTGTTACAAGTGTTCATGAGCCCAG 1736
||.||..|.|||.|.|||||||||.|.||.|.|||.||||| ||...
BPUM_1289 1684 GGTGGAAATCGCGTACAGCCAAGAGTAGTGAAAAGCGTTCA----CCTTC 1729
BSNT_02340___ 1737 CAAAAAAGAAGGCCTTGGGAA----GACCA---TTGAACAAAGA-AAGCC 1778
|||..||||||| ..||| |.||| .||||.|||.| .||||
BPUM_1289 1730 CAACGAAGAAGG----ATGAAGTCGGCCCAGTTGTGAAAAAATATGAGCC 1775
BSNT_02340___ 1779 AAACATTCTCAACAAAATTAACAACTCAGAAAG-TGACATTCAGCAGGTG 1827
.||..|.||.||.|..||||||||||| ||||| .||.|||.|.|..||.
BPUM_1289 1776 GAAAGTGCTGAATACGATTAACAACTC-GAAAGCAGATATTGACCGCGTC 1824
BSNT_02340___ 1828 AAGACTGGAATGAAGCTAGTTACCACTTC------AGGGACAGCTAAAAA 1871
||.|..||..||||..|.|| |||.|| .||.||.||
BPUM_1289 1825 AAAATGGGGCTGAAAATGGT---CACATCGACCGGCGGTACTGC------ 1865
BSNT_02340___ 1872 TACG--------TTT--ACAG-AAGATGTATCAGGGAAAACGGGAACAGC 1910
|| ||| .||| |.|||||..||||.|||||.||.|||||
BPUM_1289 1866 --CGCAGGCCGCTTTGGTCAGCATGATGTCGCAGGAAAAACAGGCACAGC 1913
BSNT_02340___ 1911 GGAAACATTTTACTACGGCACGAATCGCAACTGGTGGGGGAAAAAAACAT 1960
..||||.||.|||||.||..|.||.||||.||||||||||||....||.|
BPUM_1289 1914 CCAAACCTTCTACTATGGTGCCAACCGCAGCTGGTGGGGGAATGCCACGT 1963
BSNT_02340___ 1961 ACAATCTGACTTTTGTCGGCTATTACCCATCGAAAAATCCAAAAGTGGCT 2010
|||||.|.||.||||..||.|||||.||||||...|||||||||||||||
BPUM_1289 1964 ACAATTTAACCTTTGGAGGATATTATCCATCGTCCAATCCAAAAGTGGCT 2013
BSNT_02340___ 2011 TTTAGTGTTGT---------TG-------------TTCCATCAGTAAATG 2038
||||||||.|| || ||||.|||.||||
BPUM_1289 2014 TTTAGTGTCGTGACACCTTATGTCTCAGACAAAGATTCCGTCATTAAA-- 2061
BSNT_02340___ 2039 ATGATGATAAGATC---AATAAAATTATTGCCAAAAGAGCTATCCACGCC 2085
|..||| |.|||||||.||| |.|||
BPUM_1289 2062 --------ACCATCCCAAGTAAAATTGTTG--ATAAG------------- 2088
BSNT_02340___ 2086 TACGCAGAGCTCGAAAAAAAACA-------CAGTAAAAAATAA 2121
||||..||..|..||||.|||.| ||||||
BPUM_1289 2089 TACGTTGAATTACAAAAGAAATACGAAAAGCAGTAA------- 2124
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