Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02337 and BPUM_1286

See Amino acid alignment / Visit BSNT_02337 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:48
# Commandline: needle
#    -asequence dna-align/BSNT_02337___ykwC.1.24716.seq
#    -bsequence dna-align/BPUM_1286___ykwC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02337___ykwC-BPUM_1286___ykwC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02337___ykwC-BPUM_1286___ykwC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02337___ykwC
# 2: BPUM_1286___ykwC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 892
# Identity:     649/892 (72.8%)
# Similarity:   649/892 (72.8%)
# Gaps:          44/892 ( 4.9%)
# Score: 2265.5
# 
#
#=======================================

BSNT_02337___      1 TTGAAA------AAAACAATTGGTTTTATCGGTCTTGGAGTGATGGGAAA     44
                     .|||.|      ||||||.||||||||||.||..||||.||.||||||..
BPUM_1286___y      1 ATGACACAAATCAAAACAGTTGGTTTTATTGGAATTGGTGTAATGGGACG     50

BSNT_02337___     45 GAGCATGGCATCACATATTCTGAATGACGGCCACCCTGTTTTGGTGTACA     94
                     .||.||||||...|||.|..||.|||..||..|....|||.|.||.||.|
BPUM_1286___y     51 CAGTATGGCAGAGCATTTAATGGATGCTGGATATGAAGTTCTCGTTTATA    100

BSNT_02337___     95 CCCGGACAAAAGAAAAAGCAGAAAGCA-TACTTCAAAAAGGCGCGATCTG    143
                     |..|.|||||||..||||||| |.||| |..|||||||||||||..|.||
BPUM_1286___y    101 CAAGAACAAAAGCGAAAGCAG-ATGCACTCATTCAAAAAGGCGCATTATG    149

BSNT_02337___    144 GAA---AGATACGGTCAAAGATCTTTCGAAAGAAGCGGATGTCATCATTA    190
                     |||   .||   .||.||.||..||.|..||.|.||.||||...||||.|
BPUM_1286___y    150 GAAGCCGGA---AGTGAAGGAAATTGCACAACATGCAGATGCTGTCATCA    196

BSNT_02337___    191 CAATGGTCGGCTATCCCAGTGATGTTGAAGAAGTGTATTTCG--GAAGCA    238
                     |||||||.||.|||||....|||||.||||||.|.|||||.|  ||||  
BPUM_1286___y    197 CAATGGTAGGATATCCATCGGATGTAGAAGAAATCTATTTAGGTGAAG--    244

BSNT_02337___    239 ATGGAATTATTGAAAACGCAAAAGAAGGCG-------CATATCTTATTGA    281
                     |.||..||.|.|.|.|.||.|       ||       |.|||||.|||||
BPUM_1286___y    245 AGGGGCTTGTGGCACATGCTA-------CGCCTGGTACTTATCTGATTGA    287

BSNT_02337___    282 TATGACGACATCTAAGCCTTCGCTTGC-GAAGAAGATTGCTGAAGCG---    327
                     ||||||.|||||.||||||..|||.|| .||||| ||   |||||.|   
BPUM_1286___y    288 TATGACTACATCGAAGCCTCAGCTGGCAAAAGAA-AT---TGAAGAGAAA    333

BSNT_02337___    328 GCCAAAGAAAAAGCATTGTTCGCTTTAGACGCTCCTGTTTCCGGTGGAGA    377
                     ||.||||||||||...||||.||.|||||.||.||.|||||.||.|||||
BPUM_1286___y    334 GCGAAAGAAAAAGGGCTGTTTGCATTAGATGCACCAGTTTCGGGCGGAGA    383

BSNT_02337___    378 CGTCGGTGCACAAAACGGAACACTCGCGATTATGGTCGGTGGAGAAAAAG    427
                     |||.||.|||.||||.|||||.||.|||||.|||.|.||.|||||||||.
BPUM_1286___y    384 CGTGGGCGCAAAAAATGGAACGCTTGCGATCATGATTGGCGGAGAAAAAT    433

BSNT_02337___    428 AAGCTTTTGAAGCCTGCATGCCGATTTTCTCTTTAATGGGAGAGAATATT    477
                     .|||.|.||||||.||..||||..|.|||.....||||||.||.||.|||
BPUM_1286___y    434 CAGCCTATGAAGCGTGTCTGCCCTTATTCGAGAAAATGGGCGAAAACATT    483

BSNT_02337___    478 CAGTATCAAGGATCGGCTGGAAGCGGACAGCATACCAAGATGTGCAATCA    527
                     ||.|||||||||.|.||.||||||||.||||||||.||.|||||.||.||
BPUM_1286___y    484 CAATATCAAGGACCTGCAGGAAGCGGTCAGCATACTAAAATGTGTAACCA    533

BSNT_02337___    528 GATTGCAATTGCAGCCGGTATGATCGGTGTTGCTGAAGCGATGGCTTATG    577
                     .|||||.||||||||.||||||.|.|||||.||.||.||||||||.||||
BPUM_1286___y    534 AATTGCGATTGCAGCAGGTATGGTAGGTGTCGCAGAGGCGATGGCCTATG    583

BSNT_02337___    578 CCCAAAAATCAGGTCTAGAGCCGGAAAATGTTCTGAAAAGCATCACAACG    627
                     ||.||||||||||.||.||.||.||..||||.||.|||||.||.||.|||
BPUM_1286___y    584 CCGAAAAATCAGGACTTGATCCAGAGCATGTGCTTAAAAGTATTACGACG    633

BSNT_02337___    628 GGCGCAGCCGGAAGCTGGTCATTGTCAAATCTTGCTCCCCGTATGCTGCA    677
                     ||.|||||.|||||.|||||.||||||||.|||||.||..|.||||||.|
BPUM_1286___y    634 GGTGCAGCAGGAAGTTGGTCCTTGTCAAACCTTGCACCAAGAATGCTGAA    683

BSNT_02337___    678 AGGCAACTTTGAACCGGGATTTTATGTGAAGCATTTTATTAAGGATATGG    727
                     |||..|.||.||.||.||.||.||.|||||||||||||||||.|||||||
BPUM_1286___y    684 AGGTGATTTCGAGCCAGGGTTCTACGTGAAGCATTTTATTAAAGATATGG    733

BSNT_02337___    728 GAATTGCACTAGAGGAAGCAGAATTAATGGGGGAAGAAATGCCAGGCTTG    777
                     |.|||||.||.||.||||||||..|.|||||.||||||||||||||..|.
BPUM_1286___y    734 GCATTGCTCTTGAAGAAGCAGAGCTCATGGGAGAAGAAATGCCAGGGCTC    783

BSNT_02337___    778 TCGCTCGCAAAATC-CTTATATGACAAGCT-AGCTGCTCAAGGTGAAGAA    825
                     |||||.||.||.|| ||| |||||.||||| || ||..||.||.||||||
BPUM_1286___y    784 TCGCTTGCGAAGTCGCTT-TATGAAAAGCTGAG-TGAGCAGGGGGAAGAA    831

BSNT_02337___    826 AACAGCGGAACACAGAGTATATATAAGCTTTGGGTGAAATAA    867
                     ||||||||.|||||||||||||||||..|.|||||.||||||
BPUM_1286___y    832 AACAGCGGTACACAGAGTATATATAAATTGTGGGTAAAATAA    873


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02337 and BPUM_1286

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
