Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02314 and BPUM_1272
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_02314___ykvT.1.24716.seq
# -bsequence dna-align/BPUM_1272___ykvT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02314___ykvT-BPUM_1272___ykvT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02314___ykvT-BPUM_1272___ykvT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02314___ykvT
# 2: BPUM_1272___ykvT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 725
# Identity: 424/725 (58.5%)
# Similarity: 424/725 (58.5%)
# Gaps: 169/725 (23.3%)
# Score: 1119.5
#
#
#=======================================
BSNT_02314___ 1 ---ATGACAACGAAATTC--ACTGCTCTGGCTGTTTT-TCTTCTTTGTTT 44
|||| |||||| ||.||||| |||| ||.|| .|
BPUM_1272___y 1 ATGATGA-----AAATTCATACAGCTCT-----TTTTGTCATC-----CT 35
BSNT_02314___ 45 CATGC---CTGCAGCC---AAAATTGAGCATACACAAGCTTCACTACTGA 88
.|||| .||||||| ||.||.|||.|.|..||| ||
BPUM_1272___y 36 AATGCTGGTTGCAGCCATGAAGATGGAGAACATCCAA-----------GA 74
BSNT_02314___ 89 GC-GCAAAG------AAGACA-AAACATGAAGAAGC------GAA--ATG 122
|| ||||.| |||.|| .|||.|..|.|||| .|| |||
BPUM_1272___y 75 GCAGCAAGGCACATTAAGTCACGAACTTTCACAAGCACCTGTTAAGCATG 124
BSNT_02314___ 123 -GCTTACACATATAGATCGAAAT----ACGAATGAA-TCTTTCCC----- 161
||||.||.|||||.|||.|.|| ||| ||.|| || .||||
BPUM_1272___y 125 AGCTTTCATATATAAATCAAGATGATCACG-ATCAAGTC-ATCCCAGCAT 172
BSNT_02314___ 162 -TTCA---------CTGTCTGC------------TGATAAGGAC------ 183
|||| | |||.|| ||.||||.||
BPUM_1272___y 173 TTTCAGAGGAGAAGC-GTCAGCCGAAAGTCAAAATGCTAAGTACGTCTAC 221
BSNT_02314___ 184 --AAGAAAA-----TAACACCGATTAAGCTATCAGCACACACTGAAAAGA 226
||||||| .||.|||.| |||| |||.| |
BPUM_1272___y 222 AGAAGAAAAGTCTTCAAAACCAA----------AGCA------GAAGA-A 254
BSNT_02314___ 227 AAGAGAAAGAT---AAACCGGACAAAACAAATGATGA-GAAAG----AAA 268
|||||.||.|| |||| |||.| |||| ||||| |||
BPUM_1272___y 255 AAGAGTAAAATCAGAAAC--GACGA--------ATGAGGAAAGCGCCAAA 294
BSNT_02314___ 269 C-ATATACACAGTCT------GAAAAAGAGTTGCTGTCCCGTCTCGTTCA 311
| .||| ||| ||||..|||.||||.||.||..|.||.||
BPUM_1272___y 295 CGCTAT------TCTAATGAAGAAATGGAGCTGCTCTCACGATTGGTACA 338
BSNT_02314___ 312 CGCAGAGGCCAAAGGAGAATCATATAAAGGCAAGGTCGCTGTAGCAAGCG 361
.||.||.||.|||||.|||||.||...|||.||....|||||||||||||
BPUM_1272___y 339 TGCTGAAGCGAAAGGTGAATCTTACGCAGGTAAAAAAGCTGTAGCAAGCG 388
BSNT_02314___ 362 TTGTACTGAACAGGACGGAGAAAAAAGG---TTTTCCTGATACGATAAGA 408
|.||..|.||||| ||.|.||.|..| |||||||||.|...|.|.|
BPUM_1272___y 389 TCGTCTTAAACAG---GGTGGAACATCGCTCTTTTCCTGACAGTGTCAAA 435
BSNT_02314___ 409 GGAGTTATTTATCAGAAAAACGCCTTTGAACCGGTCGCAAACGGGAGCAT 458
||.||.|||||||||..|||.||.||..|.||.||..|.||.|||||.||
BPUM_1272___y 436 GGTGTGATTTATCAGCGAAATGCTTTCCAGCCAGTATCGAATGGGAGTAT 485
BSNT_02314___ 459 TAACCA-AAAGCCTGATAAAGAATCGATTGAAGCTGCCGAAGAAGCGCTG 507
|.|..| |||| |.|||.||||.||..||.||||||...||.|| |
BPUM_1272___y 486 TCATGATAAAG-CAGATCAAGATTCTGTTAAAGCTGTGAAACAA-----G 529
BSNT_02314___ 508 TCCTCAAAAA-----ATAGAGAAACAGATGCCATATTCTTTTATAATCCG 552
|..|.|||.| |.|||..||||.|.|||||.|..|||||||||||.
BPUM_1272___y 530 TAGTGAAAGAACATGACAGAACAACAAAAGCCATTTATTTTTATAATCCT 579
BSNT_02314___ 553 AAAACAGCGTCAGATAATTGGATTCGTTCAAGAAAAATCGTAGAAAAAAT 602
|||||.||..|||||||.|||||||||||..|.|||||.||||||...||
BPUM_1272___y 580 AAAACGGCAACAGATAACTGGATTCGTTCTCGCAAAATTGTAGAACGTAT 629
BSNT_02314___ 603 CGGCAGACACGTTTTTGCCGTCTAA 627
|||..|.|||||.||||||||.|||
BPUM_1272___y 630 CGGTCGTCACGTATTTGCCGTATAA 654
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