Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02314 and BPUM_1272

See Amino acid alignment / Visit BSNT_02314 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:46
# Commandline: needle
#    -asequence dna-align/BSNT_02314___ykvT.1.24716.seq
#    -bsequence dna-align/BPUM_1272___ykvT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02314___ykvT-BPUM_1272___ykvT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02314___ykvT-BPUM_1272___ykvT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02314___ykvT
# 2: BPUM_1272___ykvT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 725
# Identity:     424/725 (58.5%)
# Similarity:   424/725 (58.5%)
# Gaps:         169/725 (23.3%)
# Score: 1119.5
# 
#
#=======================================

BSNT_02314___      1 ---ATGACAACGAAATTC--ACTGCTCTGGCTGTTTT-TCTTCTTTGTTT     44
                        ||||     ||||||  ||.|||||     |||| ||.||     .|
BPUM_1272___y      1 ATGATGA-----AAATTCATACAGCTCT-----TTTTGTCATC-----CT     35

BSNT_02314___     45 CATGC---CTGCAGCC---AAAATTGAGCATACACAAGCTTCACTACTGA     88
                     .||||   .|||||||   ||.||.|||.|.|..|||           ||
BPUM_1272___y     36 AATGCTGGTTGCAGCCATGAAGATGGAGAACATCCAA-----------GA     74

BSNT_02314___     89 GC-GCAAAG------AAGACA-AAACATGAAGAAGC------GAA--ATG    122
                     || ||||.|      |||.|| .|||.|..|.||||      .||  |||
BPUM_1272___y     75 GCAGCAAGGCACATTAAGTCACGAACTTTCACAAGCACCTGTTAAGCATG    124

BSNT_02314___    123 -GCTTACACATATAGATCGAAAT----ACGAATGAA-TCTTTCCC-----    161
                      ||||.||.|||||.|||.|.||    ||| ||.|| || .||||     
BPUM_1272___y    125 AGCTTTCATATATAAATCAAGATGATCACG-ATCAAGTC-ATCCCAGCAT    172

BSNT_02314___    162 -TTCA---------CTGTCTGC------------TGATAAGGAC------    183
                      ||||         | |||.||            ||.||||.||      
BPUM_1272___y    173 TTTCAGAGGAGAAGC-GTCAGCCGAAAGTCAAAATGCTAAGTACGTCTAC    221

BSNT_02314___    184 --AAGAAAA-----TAACACCGATTAAGCTATCAGCACACACTGAAAAGA    226
                       |||||||     .||.|||.|          ||||      |||.| |
BPUM_1272___y    222 AGAAGAAAAGTCTTCAAAACCAA----------AGCA------GAAGA-A    254

BSNT_02314___    227 AAGAGAAAGAT---AAACCGGACAAAACAAATGATGA-GAAAG----AAA    268
                     |||||.||.||   ||||  |||.|        |||| |||||    |||
BPUM_1272___y    255 AAGAGTAAAATCAGAAAC--GACGA--------ATGAGGAAAGCGCCAAA    294

BSNT_02314___    269 C-ATATACACAGTCT------GAAAAAGAGTTGCTGTCCCGTCTCGTTCA    311
                     | .|||      |||      ||||..|||.||||.||.||..|.||.||
BPUM_1272___y    295 CGCTAT------TCTAATGAAGAAATGGAGCTGCTCTCACGATTGGTACA    338

BSNT_02314___    312 CGCAGAGGCCAAAGGAGAATCATATAAAGGCAAGGTCGCTGTAGCAAGCG    361
                     .||.||.||.|||||.|||||.||...|||.||....|||||||||||||
BPUM_1272___y    339 TGCTGAAGCGAAAGGTGAATCTTACGCAGGTAAAAAAGCTGTAGCAAGCG    388

BSNT_02314___    362 TTGTACTGAACAGGACGGAGAAAAAAGG---TTTTCCTGATACGATAAGA    408
                     |.||..|.|||||   ||.|.||.|..|   |||||||||.|...|.|.|
BPUM_1272___y    389 TCGTCTTAAACAG---GGTGGAACATCGCTCTTTTCCTGACAGTGTCAAA    435

BSNT_02314___    409 GGAGTTATTTATCAGAAAAACGCCTTTGAACCGGTCGCAAACGGGAGCAT    458
                     ||.||.|||||||||..|||.||.||..|.||.||..|.||.|||||.||
BPUM_1272___y    436 GGTGTGATTTATCAGCGAAATGCTTTCCAGCCAGTATCGAATGGGAGTAT    485

BSNT_02314___    459 TAACCA-AAAGCCTGATAAAGAATCGATTGAAGCTGCCGAAGAAGCGCTG    507
                     |.|..| |||| |.|||.||||.||..||.||||||...||.||     |
BPUM_1272___y    486 TCATGATAAAG-CAGATCAAGATTCTGTTAAAGCTGTGAAACAA-----G    529

BSNT_02314___    508 TCCTCAAAAA-----ATAGAGAAACAGATGCCATATTCTTTTATAATCCG    552
                     |..|.|||.|     |.|||..||||.|.|||||.|..|||||||||||.
BPUM_1272___y    530 TAGTGAAAGAACATGACAGAACAACAAAAGCCATTTATTTTTATAATCCT    579

BSNT_02314___    553 AAAACAGCGTCAGATAATTGGATTCGTTCAAGAAAAATCGTAGAAAAAAT    602
                     |||||.||..|||||||.|||||||||||..|.|||||.||||||...||
BPUM_1272___y    580 AAAACGGCAACAGATAACTGGATTCGTTCTCGCAAAATTGTAGAACGTAT    629

BSNT_02314___    603 CGGCAGACACGTTTTTGCCGTCTAA    627
                     |||..|.|||||.||||||||.|||
BPUM_1272___y    630 CGGTCGTCACGTATTTGCCGTATAA    654


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