Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02312 and BPUM_1271
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_02312.1.24716.seq
# -bsequence dna-align/BPUM_1271.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02312-BPUM_1271.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02312-BPUM_1271.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02312
# 2: BPUM_1271
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 214
# Identity: 138/214 (64.5%)
# Similarity: 138/214 (64.5%)
# Gaps: 35/214 (16.4%)
# Score: 386.5
#
#
#=======================================
BSNT_02312 1 TTGTTG-CGACCCGAAGAAATAA----CAGAAATGATTGAACAGCTGCGC 45
||| || ||||||..|| || .|||..||||...|.|.||.
BPUM_1271 1 ---TTGACG----GAAGAACAAATCCTCA-CAATACTTGAGTCGTTACGA 42
BSNT_02312 46 ACCGGCGCCATAAACG-AACTGAGAGTCCAGAAAGAGCATTTTCTTGA-- 92
|..|| |.||.|||.| ||.|.|...||||.|||||..||||| ||.|
BPUM_1271 43 AATGG-GACAGAAAAGCAAGTAAACATCCAAAAAGATGATTTT-TTAACG 90
BSNT_02312 93 TTTCAGGGCCGTGTT--ATCT-----AAACAAGATGATTTTAAACATTTC 135
|||| ||| ||.| ||.||||||||||||||.|||||.
BPUM_1271 91 TTTC--------GTTCGATTTTGGTGAATCAAGATGATTTTAAGCATTTT 132
BSNT_02312 136 CGAGGAATTGCCCAGCAAGGCGGAGATGTTATTTTTCAATA-CTTAGAAC 184
||.||.|||||..|.||.||.|||||||||||||||.|||| ||||.|..
BPUM_1271 133 CGCGGGATTGCGAAACATGGTGGAGATGTTATTTTTGAATATCTTACAGA 182
BSNT_02312 185 AGCCAAGAAGCTGA 198
|| |||||||||.|
BPUM_1271 183 AG-CAAGAAGCTAA 195
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