Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02308 and BPUM_1265

See Amino acid alignment / Visit BSNT_02308 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:46
# Commandline: needle
#    -asequence dna-align/BSNT_02308___ykvL.1.24716.seq
#    -bsequence dna-align/BPUM_1265___queE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02308___ykvL-BPUM_1265___queE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02308___ykvL-BPUM_1265___queE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02308___ykvL
# 2: BPUM_1265___queE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity:     536/781 (68.6%)
# Similarity:   536/781 (68.6%)
# Gaps:          98/781 (12.5%)
# Score: 1815.0
# 
#
#=======================================

BSNT_02308___      1 ATGGCTAAAGGAATTCCTGTATTAGAAATTTTCGGCCCGACAATTCAAGG     50
                     ||||||||.|..||.|||||||||||.||.||.||.|||||.||||||||
BPUM_1265___q      1 ATGGCTAAGGCGATACCTGTATTAGAGATCTTTGGTCCGACCATTCAAGG     50

BSNT_02308___     51 AGAAGGCATGGTGATCGGACAGAAAACGATGTTCGTCCGGACAGCCGGCT    100
                     ||||||.||||||||.|||||.|||||.|||||.|||.|.||.||.||||
BPUM_1265___q     51 AGAAGGGATGGTGATTGGACAAAAAACCATGTTTGTCAGAACGGCTGGCT    100

BSNT_02308___    101 GTGATTATTCCTGCAGCTGGTGTGACTCCGCCTTCACTTGGGACGGGTCT    150
                     ||||.||.||.||||||||||||||.||||||||.||||||||.|||||.
BPUM_1265___q    101 GTGACTACTCTTGCAGCTGGTGTGATTCCGCCTTTACTTGGGATGGGTCA    150

BSNT_02308___    151 GCTAAAAAAGATATTCGCTGG-ATGACGGCGGAGGAGATTTTTGCGGAGC    199
                     ||.||..|.||.||||..||| .|.|| ||.||.||.|||.|  |..||.
BPUM_1265___q    151 GCAAAGCATGACATTCAGTGGCTTCAC-GCAGAAGACATTGT--CAAAGA    197

BSNT_02308___    200 TT---AAGGACATTGGCGGAGACGCGTTTTCTCATGTGACGATCTCAGGC    246
                     .|   ||.|| ||.||.|||.|.||.|||||||||||.||.||.|||||.
BPUM_1265___q    198 ATTAAAAAGA-ATAGGTGGACAAGCTTTTTCTCATGTCACCATTTCAGGG    246

BSNT_02308___    247 GGCAACCCGGCCCTGTTAAAACAGCTGGATGTTTTTATTGAACTGCTGAA    296
                     ||.|||||.||.||.||||||||..||||.....|.|||||..||||..|
BPUM_1265___q    247 GGAAACCCTGCGCTTTTAAAACAAATGGAATCACTCATTGATTTGCTACA    296

BSNT_02308___    297 GGAAAA------TAACATCCGTGCAGCGCTTGAAACTCAAGGGACCGTTT    340
                     .|||||      |.|||      |||||||||||||.||||||||..|.|
BPUM_1265___q    297 CGAAAAAGGAATTGACA------CAGCGCTTGAAACACAAGGGACAATGT    340

BSNT_02308___    341 ATCAGGATTGGTTTACGCTGATTGATGACCTGACAATTTCTCCAAAACCG    390
                     |||||||.||||||..|...||||||||..|.||.||||||||.||.|||
BPUM_1265___q    341 ATCAGGACTGGTTTTTGAAAATTGATGATTTAACGATTTCTCCGAAGCCG    390

BSNT_02308___    391 CCAAGCTCAAAAATGGTAACGAACTTTCAAAAGCTTGACCACATTT----    436
                     |||||||||||.|||             ||||       ||.||||    
BPUM_1265___q    391 CCAAGCTCAAATATG-------------AAAA-------CAGATTTCGCG    420

BSNT_02308___    437 TAACTTCAC----TTCA-AGA--------------GAATGATAG---ACA    464
                     .||| ||||    .||| |||              |||  ||||   |.|
BPUM_1265___q    421 AAAC-TCACACGTATCATAGATGAGCTGAAAAACGGAA--ATAGATTAGA    467

BSNT_02308___    465 GCATGCTGTCAGCTTGAAGGTTGTCATCTTTAATGATGAAGATCTTGAAT    514
                     ||||||   .|||.|||||||.|||||.||      |||.||||.|||.|
BPUM_1265___q    468 GCATGC---AAGCCTGAAGGTCGTCATTTT------TGACGATCATGATT    508

BSNT_02308___    515 TTGCC----AAAATGGTGCACAAGCG--GTATCCGGGAATCCCGTTTTAT    558
                     |.|||    .|||.|.||..||.|||  .|||||.|...|.||.||||||
BPUM_1265___q    509 TAGCCTATGCAAAGGATGTTCATGCGAAATATCCAGAGCTTCCTTTTTAT    558

BSNT_02308___    559 TTACAAGTCGGAAATGATGACGTGCATACGACA------GATGATCAGTC    602
                     ||||||||.||||||||||||      ||||||      ||||||..|||
BPUM_1265___q    559 TTACAAGTAGGAAATGATGAC------ACGACAACAGGTGATGATGCGTC    602

BSNT_02308___    603 ACTGATT-ACACATTTGCTTGGGAAATATGAAGCGCTTGTTGATAAGGTA    651
                      ||.||| ||.|||||..|...||||||||||||||||||||||.|.|||
BPUM_1265___q    603 -CTTATTGACGCATTTATTAAAGAAATATGAAGCGCTTGTTGATCAAGTA    651

BSNT_02308___    652 GCTGTCGATGCGGAGCTGAATCTCGTAAGAGTGCTCCCGCAGCTGCACAC    701
                     ||....||..|.||..|.||||.|||||||||.||.||||||||.|||||
BPUM_1265___q    652 GCGCAAGACCCAGATTTAAATCGCGTAAGAGTTCTGCCGCAGCTTCACAC    701

BSNT_02308___    702 CCTGTTATGGGGCAACAAACGCGGAGTATAA    732
                     ..|.||.|||||.||.|||||.||.|||||.
BPUM_1265___q    702 ATTATTGTGGGGAAATAAACGAGGCGTATAG    732


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.