Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02299 and BPUM_1260

See Amino acid alignment / Visit BSNT_02299 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:45
# Commandline: needle
#    -asequence dna-align/BSNT_02299___motA.1.24716.seq
#    -bsequence dna-align/BPUM_1260___motA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02299___motA-BPUM_1260___motA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02299___motA-BPUM_1260___motA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02299___motA
# 2: BPUM_1260___motA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     582/837 (69.5%)
# Similarity:   582/837 (69.5%)
# Gaps:          69/837 ( 8.2%)
# Score: 1988.5
# 
#
#=======================================

BSNT_02299___      1 ATGGATAAAACTTCGTTAATCGGTATTATTCTTGCTTTTGTGGCATTGAG     50
                     |||||.|||||.||||||||.|||||||||.|.||.|||.|.|||.||||
BPUM_1260___m      1 ATGGACAAAACATCGTTAATAGGTATTATTTTAGCATTTATTGCACTGAG     50

BSNT_02299___     51 CGTCGGGATGGTTCTGAAAGGCGTCAGTTTCAGCGCCCTTGCAAACCCCG    100
                     .|||||.||||||.|||||||.||.|||.|.|.|||.|||...|||||.|
BPUM_1260___m     51 TGTCGGTATGGTTTTGAAAGGTGTAAGTCTAACCGCTCTTATCAACCCAG    100

BSNT_02299___    101 CTGCCATTTTAATTATTATCGCCGGGACAATCTCAGCAGTCGTTATTGCG    150
                     |.||.||.||.||.|||.|.|..|||||.||..||||.||.||.||.||.
BPUM_1260___m    101 CGGCTATATTGATCATTGTGGTTGGGACGATTGCAGCTGTTGTCATCGCA    150

BSNT_02299___    151 TTCCCAACAAAAGAAATTAA---------AAAAGTGCCTGCGCTGTTTCG    191
                     ||||||.|.|..||||||||         ||||.||          ||||
BPUM_1260___m    151 TTCCCATCTAGTGAAATTAAGAAAACACCAAAATTG----------TTCG    190

BSNT_02299___    192 ----AGTGTTATTT--AAGGAAAATAAACAGCTCACAATAGAGGAACTCA    235
                         |     ||||  ||.||.||.||.|..|..||.||..|.|||.|.|
BPUM_1260___m    191 GCAAA-----ATTTTCAAAGACAACAAGCTTCCAACGATTCAAGAAATGA    235

BSNT_02299___    236 TTCCTATGTTCTCTGAATGGGCTCAGCTTGCACGCCGCGAAGGTCTGCTT    285
                     |.|||.|.||.||..|.|||||.||..||||.||.||.||||||||..|.
BPUM_1260___m    236 TCCCTCTTTTTTCAAACTGGGCACAAATTGCGCGTCGTGAAGGTCTTTTG    285

BSNT_02299___    286 GCTTTAGAAGCAAGCATTGAGGATGTAGATGATGCTTTCTTGAAAAACGG    335
                     |||||||||||.|||||||||||.||||||||||.||||.|.||.|||||
BPUM_1260___m    286 GCTTTAGAAGCTAGCATTGAGGAAGTAGATGATGATTTCCTTAAGAACGG    335

BSNT_02299___    336 GCTCAGCATGGCTGTTGACGGGCAAAGCGCGGAATTTATCAGAGA--TAT    383
                     ..|.||||||||.|||||.||.|||||.||.||||||||..|.||  |.|
BPUM_1260___m    336 TTTAAGCATGGCCGTTGATGGTCAAAGTGCAGAATTTATTCGTGACGTCT    385

BSNT_02299___    384 TATGACAGAGGAAGTCGAAGCAATGGAGGACAGGCACCAAGCCGGAGCCG    433
                     ||  |||||.|||||.||.||.||||..||.||.||.||..|.||.||  
BPUM_1260___m    386 TA--ACAGAAGAAGTTGACGCCATGGCTGAAAGACATCAGTCAGGCGC--    431

BSNT_02299___    434 CTATT----TTTACACAAGCGGGAACGTACGCCCCGACACTTGGAGTACT    479
                       |||    |||||||||||.||.||.|||||.|||||.|||||.|||||
BPUM_1260___m    432 --ATTAATCTTTACACAAGCTGGTACATACGCTCCGACGCTTGGTGTACT    479

BSNT_02299___    480 CGGTGCTGTAATCGGGCTGATTGCCGCTCTCTCTCATATGGATAACACAG    529
                     .||.||.||..||||.||.|||||.||.||..||.|.||||...|.|..|
BPUM_1260___m    480 TGGCGCCGTTGTCGGACTTATTGCTGCACTTGCTAACATGGGAGATATTG    529

BSNT_02299___    530 ATGAGCTTGGACACGCCATCAGTGCCGCCTTTGTTGCCACACTTCTCGGT    579
                     |.|..|||||.||.||.||||||||.|||||.|||||.|||||.||.||.
BPUM_1260___m    530 AAGCACTTGGGCATGCAATCAGTGCTGCCTTCGTTGCGACACTGCTTGGG    579

BSNT_02299___    580 ATCTTTACAGGGTATGTGTTATGGCATCCTTTCGCAAATAAATTAAAACG    629
                     ||.|||||.||||||||||||||||||||.|||||.||.||..|.||.||
BPUM_1260___m    580 ATTTTTACTGGGTATGTGTTATGGCATCCATTCGCCAACAAGCTGAAGCG    629

BSNT_02299___    630 AAAATCAAAACAAGAAGTAAAACTGCGTGAGGTCATGATTGAAGGTGTTT    679
                     .||||||||..|||||||||||||.|||..|.|.|||||.|||||..|..
BPUM_1260___m    630 TAAATCAAAGGAAGAAGTAAAACTTCGTCTGATTATGATCGAAGGGATCC    679

BSNT_02299___    680 TATCCGTTTTAGAAGGACAAGCACCGAAAGTCATCGAACAAAAGCTTTTA    729
                     |.||.|||.|.|||||.|||.|.||.|||||.||.||||||||.|||.|.
BPUM_1260___m    680 TTTCTGTTCTTGAAGGTCAATCTCCAAAAGTGATTGAACAAAAACTTCTC    729

BSNT_02299___    730 ATGTATCTT-CCTGCGAAGGACCGCTTG-AAAT-TTG-CA--GAACAAGG    773
                     ||||| ||| ||.|||||.||.||  || |||| ||| ||  |||.||||
BPUM_1260___m    730 ATGTA-CTTACCAGCGAAAGAACG--TGCAAATCTTGTCATTGAAGAAGG    776

BSNT_02299___    774 AGAGGCGCAAAATGGCGAGAAAAAAGAAGAAGCATGA    810
                     |||....|||||||||.||                  
BPUM_1260___m    777 AGAAAAACAAAATGGCTAG------------------    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02299 and BPUM_1260

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
