Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02292 and BPUM_1256
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_02292___spo0E.1.24716.seq
# -bsequence dna-align/BPUM_1256___spo0E.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02292___spo0E-BPUM_1256___spo0E.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02292___spo0E-BPUM_1256___spo0E.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02292___spo0E
# 2: BPUM_1256___spo0E
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 302
# Identity: 148/302 (49.0%)
# Similarity: 148/302 (49.0%)
# Gaps: 103/302 (34.1%)
# Score: 312.5
#
#
#=======================================
BSNT_02292___ 1 ----ATGGGCGGTTCTTCTG-AACAAGAAAG--ATTGTTGGTGTCTATTG 43
||.| ||.|| ||.||.|.|| ||||.|..||||.||||
BPUM_1256___s 1 ATGAATAG-------TTATGTAAGAAAAGAGCAATTGCTAATGTCAATTG 43
BSNT_02292___ 44 ATGAAAAAAGAAAGTTAATGATAGATGCCGCTAGAAAGCAG--GGATTTA 91
|.||.||.|||||....|||.||||.||.||| .|||||| ||.|..|
BPUM_1256___s 44 ACGAGAAGAGAAAACAGATGGTAGAAGCTGCT--CAAGCAGAAGGCTACA 91
BSNT_02292___ 92 CAGGGCATGACACG---ATCAGGCACAGTCAGGAGCTGGA----TTGTTT 134
|.|| |||.||| ||.|...|.|||||.||.||||| .||
BPUM_1256___s 92 CTGG---TGAGACGACAATTAAATATAGTCAAGAACTGGACAACCTG--- 135
BSNT_02292___ 135 AATAAATGAATATC---ACCAGCTTATGCAAGAAAACGAACATTC----- 176
||.|||||.|||| |.|..|||.|.||.||.| ||||.||
BPUM_1256___s 136 -ATGAATGAGTATCAGTATCTCCTTTTTCATGAGA---AACAATCTGCCC 181
BSNT_02292___ 177 ---CCAAGGGATTCAAGGCCTTGTAAAG-----AAATTAGGCT------T 212
|| .||||.|...|||| ||||.||.|| |
BPUM_1256___s 182 CCTCC-----TTTCATGATTTTGT----CTCTCAAATGAGTCTGCTATCT 222
BSNT_02292___ 213 GTG------GCCCCGCAGAGATGTTATGCCAGCATATGATGCAAATAAAT 256
||| ||| |.|||| |||
BPUM_1256___s 223 GTGAACCGTGCC---------TCTTAT---------TGA----------- 243
BSNT_02292___ 257 AG 258
BPUM_1256___s 243 -- 243
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