Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02288 and BPUM_1253
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_02288___mtnX.1.24716.seq
# -bsequence dna-align/BPUM_1253___mtnX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02288___mtnX-BPUM_1253___mtnX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02288___mtnX-BPUM_1253___mtnX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02288___mtnX
# 2: BPUM_1253___mtnX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity: 488/776 (62.9%)
# Similarity: 488/776 (62.9%)
# Gaps: 148/776 (19.1%)
# Score: 1449.5
#
#
#=======================================
BSNT_02288___ 1 ATGACGACTCGAAAACC--TTTTATTATTTGTGATTTTGACGGAACAATC 48
|||| .|||||| ||.||| .||||||||||||.|||||.||.
BPUM_1253___m 1 ATGA------AAAAACCAATTGTAT--GTTGTGATTTTGATGGAACCATT 42
BSNT_02288___ 49 ACGATGAACGACAACATTATAAATATCATGAAAACA-TTTGCTCCCCCAG 97
||||..||.||.||.||.||....|||||| ||.|| |||||.|| .
BPUM_1253___m 43 ACGAAAAATGATAATATCATTCGCATCATG-AAGCACTTTGCACC----A 87
BSNT_02288___ 98 AGTGGGTG------GCATTAAAAGACGGCGTACTTTCCA-AAACGCTGTC 140
||||..|| || |.||.||||..||.|| || ||| |..
BPUM_1253___m 88 AGTGAATGGACGAAGC--TGAAGGACGATGTTCT---CACAAA----GGA 128
BSNT_02288___ 141 GATCA------AGGAAGGTGTCGGGCGGATGTTCGGCCTTC--------- 175
||||| |.|||||.|||||||.||||| |||
BPUM_1253___m 129 GATCACCATTCAAGAAGGCGTCGGGCAGATGT------TTCAATTACTGA 172
BSNT_02288___ 176 ----TGCCCAGCCGTTTAAAAGAAGAGATTACAAGT--TTTGTATTGGAA 219
||..|| ||||||||..||| ||| | |||.|.||.|||
BPUM_1253___m 173 AGAGTGATCA-------AAAAGAAGCCATT-CAA-TCGTTTATTTTAGAA 213
BSNT_02288___ 220 GATGCAAAAATCAGGGAAGGCTTTCGGGAATTTGTAGCATTTATCAATG- 268
|||.||.|.||..|.|||||.||...|.|||||| ||.||| |||
BPUM_1253___m 214 GATACAGAGATTCGAGAAGGATTCAAGCAATTTG-----TTGATC-ATGT 257
BSNT_02288___ 269 -----AGCACGAGATTCCGTTTTATGTCATAAGCGGTGGAATGGACTTTT 313
||...||.|||||.||.|||||..|||||||.||.||||||||||
BPUM_1253___m 258 GAAAAAGGCTGATATTCCCTTCTATGTGCTAAGCGGCGGGATGGACTTTT 307
BSNT_02288___ 314 TTGTATATCCTTTGCTTGAAGGCATTGTGGATAAAGACCGCATTTATTGC 363
||||||||||..|.||.||||||||||||||.|.|||....|||||||||
BPUM_1253___m 308 TTGTATATCCCATACTCGAAGGCATTGTGGAAAGAGAGGATATTTATTGC 357
BSNT_02288___ 364 AACCATGCTTCATTTGACAATGACTATATCCATATTGACTGGCCTCATTC 413
||.|||||.||||||.||.|.||..||||.||.|||||.|||||.|||.|
BPUM_1253___m 358 AATCATGCCTCATTTCACGAAGAGCATATTCAGATTGAATGGCCACATGC 407
BSNT_02288___ 414 CTGCAAGGGCACATGCAGCAA--TCAA------TGCGGGTGCTGTAAGCC 455
|||| .||.| |||| |||| |||||.|||||||||||
BPUM_1253___m 408 CTGC-------GATTC-GCAATGTCAAAATGGCTGCGGATGCTGTAAGCC 449
BSNT_02288___ 456 GTCGGTCATCCATGAACTTTCTGAACC----GAACCAATATATCATCATG 501
|||..||||.|..||| ||||.|| |||..|.|..||.||||||
BPUM_1253___m 450 GTCAATCATTCGAGAA----CTGACCCGTGAGAATGACTTCATTATCATG 495
BSNT_02288___ 502 ATCGGTGATTCGGTTACAGATGTGGAGGCAGCAAAGC-TG----TCTGAC 546
||.||.|||||.||.||.|||||||||||.||||||| || |||.||
BPUM_1253___m 496 ATTGGAGATTCAGTCACCGATGTGGAGGCGGCAAAGCATGCGGATCTCAC 545
BSNT_02288___ 547 CTATGCTTTGCAAGGGATTATTTATTAAACGAATGCCGGGAGCAAA-ACC 595
.|||||..|.||.||.||..||||||||| |.||| |.|
BPUM_1253___m 546 -----ATTTGCGCGTGACTACTTGCTAAACGAAT-------GTAAAGAAC 583
BSNT_02288___ 596 TCAATCATCTTCCGTATCAAGATT--------TTTATGAGATCAGAAAG- 636
||...|.|.||| ||.||||.| ||||| .||||..||||
BPUM_1253___m 584 TCGGGCTTGTTC---ATAAAGAGTATGAAACATTTAT-TGATCTTAAAGC 629
BSNT_02288___ 637 -GAAATTGAGAATGTAAAGGAGGTACAGGAATGGCTG--CAAAACAAGAA 683
.||.||||..|..|||||||.||..|||||||||.| .||||.||.||
BPUM_1253___m 630 ACAATTTGATCAAATAAAGGAAGTGAAGGAATGGCAGACGAAAAGAACAA 679
BSNT_02288___ 684 -CGCTGGCGAGAGCTCGCTGAAGTAA 708
|||||||..|||||.|
BPUM_1253___m 680 GCGCTGGCAGGAGCTAG--------- 696
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