Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02287 and BPUM_1252
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_02287___mtnW.1.24716.seq
# -bsequence dna-align/BPUM_1252___mtnW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02287___mtnW-BPUM_1252___mtnW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02287___mtnW-BPUM_1252___mtnW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02287___mtnW
# 2: BPUM_1252___mtnW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1333
# Identity: 860/1333 (64.5%)
# Similarity: 860/1333 (64.5%)
# Gaps: 170/1333 (12.8%)
# Score: 2604.0
#
#
#=======================================
BSNT_02287___ 1 ATGGATGA---AAATGAAAGGAGCT--CTGGCATGAGTGAGTTATTAGCG 45
|||.|||| ||..||||||.|.| ||.| |||||||.|||.|.||.
BPUM_1252___m 1 ATGTATGACGCAATCGAAAGGGGATTCCTAG--TGAGTGAATTACTGGCA 48
BSNT_02287___ 46 ACATATCTCCTGACCGAAC--CGGGAGCCGAT--AC-AGAGAA---GAAA 87
|||||..|..|.|| || ||.||| ||| || ||.||| .|||
BPUM_1252___m 49 ACATACGTATTAAC---ACATCGAGAG--GATGAACAAGTGAACCGAAAA 93
BSNT_02287___ 88 GCAGAACAAATCGCAACAGGATTGACAGTAGGCTCCTGGACTGATCTGCC 137
||.||.||.|||||....||.||.|||||.||.||.|||||.|||.|.||
BPUM_1252___m 94 GCGGAGCAGATCGCGCTTGGTTTAACAGTTGGATCATGGACGGATTTACC 143
BSNT_02287___ 138 CCTTGTAAAACAGGAGCAAATGCAAAAGCACAAGGGGCGGGTGATAAAAG 187
.|...|.|||.|.|||||..|.||||||||.||.||.||||| |.|||||
BPUM_1252___m 144 GCAGCTCAAAAAAGAGCAGCTTCAAAAGCATAAAGGCCGGGT-AGAAAAG 192
BSNT_02287___ 188 TTGAGGAGAGAGAGGGAACTGCTGCATCAGAAAAA-------CA------ 224
|.|.|||||||| ||
BPUM_1252___m 193 -----------------------GTAACAGAAAAATTTGCCCCAGCCGAG 219
BSNT_02287___ 225 AGCGGTC-------ATC-------ACAATTGCCTATCCTGA-AATCAATT 259
|.||||| ||| ||.|||||.|||||||| ..|.|.||
BPUM_1252___m 220 AACGGTCTATATCAATCTGAGGTGACCATTGCTTATCCTGAGGCTAACTT 269
BSNT_02287___ 260 TCTCTCAG--GATATTCCGGCTTTGCTGACAACAGTGTTTGGCAAGCTGT 307
| |||| |||||.||||||.|..||.|.||..|.|||||.||.||.|
BPUM_1252___m 270 T---TCAGCAGATATACCGGCTGTTTTGTCGACGATCTTTGGAAAACTTT 316
BSNT_02287___ 308 CCCTGGACGGAAAAATCAAATTAATCGATCTTCACTTCTCTGA-AGTATT 356
|.||.||.||||||.|.|||.||.|.||..||||.|||||.|| || |||
BPUM_1252___m 317 CACTAGATGGAAAAGTGAAACTAGTGGACATTCAATTCTCGGATAG-ATT 365
BSNT_02287___ 357 T-----AAGCGTGCACTGCCGGGACCGAAGTTTGGCGTAT--ACGGCATC 399
| |||| |||||.||||||...|||| |||| |.|||||.
BPUM_1252___m 366 TAAAAAAAGC-----CTGCCAGGACCGGTATTTG--GTATTGATGGCATA 408
BSNT_02287___ 400 CGGAA--------GCTGCTGGGAGAGTTTGAGAGACCGCTGTTAATGAGC 441
||.|| || |.||||||..||||..||||.|||||.
BPUM_1252___m 409 CGAAAAAAAACAGGC--------GTGTTTGATCGACCTTTGTTGATGAGT 450
BSNT_02287___ 442 ATATTTAAAGGCGTAATCGGAAGGGACCTGAGTGATATTAAAGAACAGCT 491
||.||||||||.||.||.||..|.||..|||..|||.|.||||||||.||
BPUM_1252___m 451 ATTTTTAAAGGTGTCATTGGCCGTGATATGACAGATTTAAAAGAACAACT 500
BSNT_02287___ 492 CCGGCAGCAGGCGCTTGGCGGAGTTGACTTGATTAAAGACGATGAAATTT 541
|||....||.||..|.|||||.||||||||.||.||||||||||||||||
BPUM_1252___m 501 CCGTTTACAAGCATTAGGCGGTGTTGACTTTATCAAAGACGATGAAATTT 550
BSNT_02287___ 542 TCTTTGAGA--CTGGTCTAGCGCCTTTTGAAACAAGAATTGCAGAAGGAA 589
|.||||||| |.| |||||.|||||||||....||||...||||||||
BPUM_1252___m 551 TATTTGAGAGCCCG--CTAGCCCCTTTTGAAGATCGAATCAAAGAAGGAA 598
BSNT_02287___ 590 AGCAAATATTGAAAGAAACGTATGAACAAACCGGACATAAAACGCTGTAT 639
|..|.|||||.||||||||.||||||.|.||.||.||...||||||.|||
BPUM_1252___m 599 AAAAGATATTAAAAGAAACATATGAAGAGACAGGGCACCGAACGCTATAT 648
BSNT_02287___ 640 GCGGTGAATTTGACCGGACGTACGGCTGATCTGAAAGACAAAGCGAGACG 689
||.||..||||.||.|||.|.||...|||.||||..||...|||.|||..
BPUM_1252___m 649 GCCGTTCATTTAACAGGAAGAACCTTTGAACTGAGGGATCGAGCAAGAAA 698
BSNT_02287___ 690 CGCCGCCGAGTTGGGAGCGGATGCGCTTTTGTTTAATGTCTTCGCTTACG 739
.||.||.||..|.|||||||||||.||.||.||.||.||.||.||.||||
BPUM_1252___m 699 GGCAGCTGAACTCGGAGCGGATGCACTCTTATTCAACGTTTTTGCCTACG 748
BSNT_02287___ 740 GCTTGGACGTTATGCAAGGCCTTGCGGAAGATCCTGAAATCCCAGTTCCG 789
|..|.||.||.||||||.||.|.||.||.|||||.||.||.|.|.|.||.
BPUM_1252___m 749 GGCTAGATGTCATGCAAAGCTTAGCTGAGGATCCAGATATTCGATTGCCT 798
BSNT_02287___ 790 ATTATGGCGCATCCAGCAGTGAGCGGAGCGTTTACGTCTTCTCCGTTTTA 839
||||||||.|||||.|||||.|||||.||.||.||.||.||.||....||
BPUM_1252___m 799 ATTATGGCCCATCCTGCAGTAAGCGGCGCTTTGACATCATCACCTGAATA 848
BSNT_02287___ 840 CGGTTTTTCTCACGCTCTTTTACTCGGAAAATTAAACCGATATTGC-GGT 888
.||.||.||.||..|||||.|..|.||.||||||||.||||| ||| ||.
BPUM_1252___m 849 TGGATTCTCCCATTCTCTTCTTTTAGGTAAATTAAATCGATA-TGCTGGC 897
BSNT_02287___ 889 GCTGACTTCAGCCTCTTTCCGTCTCCATATGGTTCGGTTGCGCTTCCAAG 938
|||||.||.||.||.|||||.||.||.|||||.|||||.||.|||||.|.
BPUM_1252___m 898 GCTGATTTAAGTCTTTTTCCCTCACCGTATGGGTCGGTCGCACTTCCGAA 947
BSNT_02287___ 939 AGCAGATGCACTGGCGATTC-ATGAAGAATGTGTGAGAGAGGATGCTTTT 987
|..||||||..|.| ||.|| ||||||..|||||.|.|||||||.|..||
BPUM_1252___m 948 AAAAGATGCTTTTG-GAATCTATGAAGCTTGTGTAAAAGAGGATTCGGTT 996
BSNT_02287___ 988 AACCAAACATTTGCTGTTCCGTCAGCAGGCATTCATCCCGGCATGGTTCC 1037
.|..|||||||..|.||.||||||||||||||||||||.||.||||||||
BPUM_1252___m 997 CAAAAAACATTCCCAGTCCCGTCAGCAGGCATTCATCCTGGAATGGTTCC 1046
BSNT_02287___ 1038 GCTATTAATGCGTGATTTCGGCATAGACCACATTATTAACGCCGGAGGAG 1087
..|.||.|||...|||||.||..|.|||||..|.||.||.||.||.||||
BPUM_1252___m 1047 AGTTTTGATGAAAGATTTTGGACTCGACCATGTGATAAATGCTGGTGGAG 1096
BSNT_02287___ 1088 GCGTACATGGACATCC-----GAACGGTGCCCAAGGCGGGGGGCGAGCGT 1132
|..|.||.|||||||| ||.||.| .|||||.|||..|||.|
BPUM_1252___m 1097 GAATTCACGGACATCCTCGTGGAGCGAT-----CGGCGGAGGGAAAGCAT 1141
BSNT_02287___ 1133 TCAGAGCCATTATTGATGCGGTCCTAGAGGCCCAGCCGATTGATGAAAAA 1182
|..||.|.||.|||||||||||..||.| ||.|||
BPUM_1252___m 1142 TTCGATCGATCATTGATGCGGTGATACA------------TGGTGA---- 1175
BSNT_02287___ 1183 GCCGAACAATGCAAG----GA-----TCTT---AAG-CTT-------GCG 1212
..||||.|||| || |||| ||| ||| ||.
BPUM_1252___m 1176 ----GTCAATCCAAGAGAAGACAGCTTCTTGCCAAGACTTAAAAGCAGCA 1221
BSNT_02287___ 1213 CTAGATAAATGGGGAAAGGTTGAAGCCGTATGA 1245
||.||...||||||||.||| ||..|.||.|
BPUM_1252___m 1222 CTTGAATTATGGGGAAGGGT---AGTAGAATAA 1251
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