Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02276 and BPUM_1246
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_02276___ykrP.1.24716.seq
# -bsequence dna-align/BPUM_1246___ykrP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02276___ykrP-BPUM_1246___ykrP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02276___ykrP-BPUM_1246___ykrP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02276___ykrP
# 2: BPUM_1246___ykrP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1094
# Identity: 716/1094 (65.4%)
# Similarity: 716/1094 (65.4%)
# Gaps: 145/1094 (13.3%)
# Score: 2129.0
#
#
#=======================================
BSNT_02276___ 1 ATGAGTA-AATCGCGGGACAGTTATTTCGATAACGCAAAATTTTTATTGA 49
||| |.| ..||.||.||.||||||||.|||||.||.||.|||.|..|||
BPUM_1246___y 1 ATG-GCATCTTCACGAGATAGTTATTTTGATAATGCGAAGTTTCTTCTGA 49
BSNT_02276___ 50 TATTCCTTGTTGTATTCGGTCATATCCTTCGTTCCTTTATTAATGATAAT 99
|.||.||.||.||.||.||||||.|..|.||.||.||.|||.||||||||
BPUM_1246___y 50 TTTTTCTAGTGGTTTTTGGTCATTTGTTACGATCATTCATTCATGATAAT 99
BSNT_02276___ 100 CATTTTATGCTCTACCTCTACAAGTTCATTTACACATTCCATATGCCTGC 149
.|||..|||||.||..|.||||||||.|||||.||.||.|||||||||||
BPUM_1246___y 100 GATTGGATGCTTTATTTATACAAGTTTATTTATACTTTTCATATGCCTGC 149
BSNT_02276___ 150 ATTTATTCTTGTATC-CGGTTATTTCGCGAAAGGCTTT---AAACGGGCG 195
.||||||.|.||.|| .||||.||| ||.|||||.||| |||| |.
BPUM_1246___y 150 CTTTATTTTGGTTTCTGGGTTCTTT-GCAAAAGGGTTTAGAAAAC---CA 195
BSNT_02276___ 196 GG--ATATGTAAAAAAGCTGGCGGTCAAGCTGATTATTCCGTATTTGATT 243
|| .|||| ||||||| |.||.||.||||||||.||.||.|||||.|||
BPUM_1246___y 196 GGTTTTATG-AAAAAAG-TCGCTGTTAAGCTGATCATCCCATATTTCATT 243
BSNT_02276___ 244 TTCCAAATCATTTATTCCGTCTTTTATTACATTATGCAAGATGAAAGCAT 293
||.||..|.||.||||||||.|..|||||..|..||||.|||.|||||||
BPUM_1246___y 244 TTTCAGGTGATCTATTCCGTTTACTATTATCTCTTGCAGGATCAAAGCAT 293
BSNT_02276___ 294 GGCAAATGTGAACCCGATTGATCCGCAATGGTCGTTATGGTTTCTTGTAA 343
.||.|||.|.||.||.|||||.|||||||||||.|||||||||.|..|.|
BPUM_1246___y 294 CGCCAATTTAAATCCAATTGACCCGCAATGGTCTTTATGGTTTTTAATTA 343
BSNT_02276___ 344 GCTTATTCTTTTGGAACCTGCTCCT-ATATCCTTTTTCAAAAGTTTCAAA 392
|.|||||||||||||||.||||.|| || |||||||||.|||.|..||..
BPUM_1246___y 344 GTTTATTCTTTTGGAACTTGCTACTCAT-TCCTTTTTCTAAACTGCCATT 392
BSNT_02276___ 393 GCAGTGGGCGCTGTTTGTCAGCTGCGGAATCGCCGTGCTGATCGGTTATC 442
.|||||||||.||.|.|||||.|....|||.||..|.||..|||||||..
BPUM_1246___y 393 TCAGTGGGCGATGATCGTCAGTTTGTCAATTGCGTTACTTGTCGGTTACG 442
BSNT_02276___ 443 TGGACTTTGTCAGCAGCACGCTGAGCTTGTCACGGACATTCGTATTCTTA 492
|.|||..|.|.||||..||||||||||||||.||.|||||.||.||.||.
BPUM_1246___y 443 TAGACAGTATTAGCAATACGCTGAGCTTGTCGCGTACATTTGTCTTTTTG 492
BSNT_02276___ 493 CCGATGTTCCTTGTCGGTTTTTATTTAAATAAACATCATTTTGATTTATT 542
||||||||..|.|..||.||.||||||||.||.||.||||||||.||
BPUM_1246___y 493 CCGATGTTTTTAGCTGGCTTCTATTTAAAAAAGCAGCATTTTGAATT--- 539
BSNT_02276___ 543 GAGATC--------GAAACGCGGCAAACAAATTGC-GCTCGGAGTGCTTG 583
.||| .||| ||.|||| |.|| || |.|.||||
BPUM_1246___y 540 --CATCCGTACAAGTAAA---GGAAAAC---TGGCAGC----ACTTCTTG 577
BSNT_02276___ 584 ------CCGCAGTATTCGTCATCTGCTGGGGCAT-----CGATTTTGACT 622
..||.||||||.|..|.|||| || .||.|||||.|
BPUM_1246___y 578 TATTAATGGCTGTATTCTTGTTTTGCT-----ATTTATATGAATTTGATT 622
BSNT_02276___ 623 ATTCTTTTCTGTTTGGTTCAAAACCGTATTCTTCATTTGGAGACGTTACC 672
||||.||..|.|||||.|||.|..|.|||.||||..||||.||
BPUM_1246___y 623 ATTCCTTCTTATTTGGATCACAGTCATATGCTTCTCTTGGTGA------- 665
BSNT_02276___ 673 CTG-----GTAA--GCGGACTAT--CCCGAATCGGC-TGGTATGTACTCG 712
|| ||.| |||| |.|| ..||||| ||| ||||||.|.||.|
BPUM_1246___y 666 -TGAAGGAGTCATTGCGG-CAATGAAACGAAT-GGCATGGTATTTGCTTG 712
BSNT_02276___ 713 CCTTTGGGGCAACCTTCAGCTTTTTAGCGCTTGTTCCGCAAAAACG--GT 760
|.||.||.||.||.||||||||.||.||..|.||.|| ||.||| ||
BPUM_1246___y 713 CATTCGGCGCTACATTCAGCTTCTTTGCTTTAGTCCC---AACACGACGT 759
BSNT_02276___ 761 AT-TTCTTTACCAAATGGGGAACCCGGACATTTTACGTGTATCTGCTTCA 809
.| ||||||||.||||||||.||..|.||..|.||.||||||.|..|.||
BPUM_1246___y 760 TTCTTCTTTACAAAATGGGGCACAAGAACGCTATATGTGTATTTATTACA 809
BSNT_02276___ 810 CGGGTTTATTATTAAG-ACATT---ACGAC-AGGTCGGGCTTGAGGATTG 854
.||.|||.|.||.||| .|.|| ||||| .||| ||||.|||||
BPUM_1246___y 810 TGGCTTTGTCATCAAGCTCCTTAGAACGACTTGGT-----TTGATGATTG 854
BSNT_02276___ 855 G--CTTACTGACT--ATCAAAGCTTAGTGATCCTCTTGCTTTTAACAGCA 900
| | ||||.| |.|| |||| |.|||.||.|.|||..|
BPUM_1246___y 855 GGCC---CTGAATGCAGCA------AGTG-TGCTCATGTTATTACTA--- 891
BSNT_02276___ 901 GCCCTGACATCAGT--------------CCTCTCCAGCAACTTTGTTAAG 936
||||| ||.| |||.||.||||.|||||||||.
BPUM_1246___y 892 ---CTGAC--CATTCTGCTCACCTTTACCCTGTCTAGCACCTTTGTTAAA 936
BSNT_02276___ 937 ACAGTCGCTCAGCCCTTCATTGAGCTGAGGATGACC-AGCTTAT---TGC 982
||.||.||.|||||..|.||||||||.|..|||||| |.||||| |.|
BPUM_1246___y 937 ACCGTTGCACAGCCAGTGATTGAGCTCAAAATGACCAATCTTATGCGTAC 986
BSNT_02276___ 983 AATTTGTCAGAGGAACGGGCA-AAAATGC--TTATTTAAAATAG 1023
|||| ||.|||| |.||.|| ||||...|||||.
BPUM_1246___y 987 AATT----------ACCGGCAGACAAGGCAGTTATAGCAAATAA 1020
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