Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00959 and BPUM_1243
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:38
# Commandline: needle
# -asequence dna-align/BSNT_00959.1.24716.seq
# -bsequence dna-align/BPUM_1243.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00959-BPUM_1243.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00959-BPUM_1243.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00959
# 2: BPUM_1243
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity: 183/615 (29.8%)
# Similarity: 183/615 (29.8%)
# Gaps: 375/615 (61.0%)
# Score: 392.5
#
#
#=======================================
BSNT_00959 0 -------------------------------------------------- 0
BPUM_1243 1 GTGCTGGATGTGTTATGGAAAGCGATTGTCATGCTGCTAGTTGGTACCTT 50
BSNT_00959 0 -------------------------------------------------- 0
BPUM_1243 51 GCTGCTGAGAATAGCAGGGCCCAAATCCATTAGTCAATTAACTGTTCAAC 100
BSNT_00959 0 -------------------------------------------------- 0
BPUM_1243 101 AAACAGTGATCATGATTTCAATCGGATCGATTATTATCCAACCCTTTATT 150
BSNT_00959 0 -------------------------------------------------- 0
BPUM_1243 151 GAGCATAATTTACTTGAAACGATTTATGCAGCCGCTACCTTTATTGTGGC 200
BSNT_00959 1 ----------ATGTTGACCGGAGAAGC----------------------- 17
|| ||||||||
BPUM_1243 201 GCTTGTCATCAT-------GGAGAAGCTGTCGATTCAATCTGATTTCTTT 243
BSNT_00959 18 -AAAAGTTGTTATT----GAAA-------------------ACGGACA-- 41
||||.|||.| || |||| |.|||.|
BPUM_1243 244 GAAAAATTGGT-TTCAGGGAAATCTGTGGTCATTTTGCAGGATGGAGAAA 292
BSNT_00959 42 -GCTTCATATCGAAAACTTAAAGAAGATGAGACTTACAGTTGATCAGCTT 90
||||.|| .|.||.||.|||||.|.|||.||||||...|||||.|||
BPUM_1243 293 TGCTTGAT---CACAAGTTGAAGAAAACGAGGCTTACAAGAGATCAACTT 339
BSNT_00959 91 GAAATGCAGCTACGGCTTCACGGCGTTACGGGTA-TACA-AGA------- 131
.|||||| ||||.|.|..|..| |||| |||| |||
BPUM_1243 340 AAAATGC-------GCTTAAAGCAGCAA--GGTATTACAGAGATCAGCAG 380
BSNT_00959 132 TGTCAAAATTGCGACATTAGAGGCAAACGGGCAATTAGGAATTGAATT-- 179
|.||||||..||.||..||||.||.||.||.|||.|.||...|||.||
BPUM_1243 381 TCTCAAAAAAGCCACCCTAGAAGCCAATGGACAAATCGGCTATGAGTTAA 430
BSNT_00959 180 -GACTGATGACGCCAAGCCTTTAACAGTCAGGGATCTGAAAAAACTCATT 228
|.|.||.|| .|||||..|.||.||| ||||
BPUM_1243 431 AGCCAGAGGA---AAAGCCGGTGACGGTC------------AAAC----- 460
BSNT_00959 229 CACCCCGATTTCATAAATAAGGACGGA----CAAGCCCAGTCTGGCAATC 274
|||| |||||| |.||.||| |.|.
BPUM_1243 461 --------------AAAT---GACGGAATTTCTAGACCA-------ATTA 486
BSNT_00959 275 AGAATATTTTTGATGAAGTTGGCAAAAAAAATA---AAAAAAACGTCCCT 321
||| |||| ||..||||| .||||||.| .||
BPUM_1243 487 AGA-----------GAAG------AACTAAATATGTTAAAAAAGG--ACT 517
BSNT_00959 322 AAAAAGCTGCATTAA 336
.|
BPUM_1243 518 GA------------- 519
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