Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02270 and BPUM_1242
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_02270___ykrM.1.24716.seq
# -bsequence dna-align/BPUM_1242___ykrM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02270___ykrM-BPUM_1242___ykrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02270___ykrM-BPUM_1242___ykrM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02270___ykrM
# 2: BPUM_1242___ykrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1401
# Identity: 953/1401 (68.0%)
# Similarity: 953/1401 (68.0%)
# Gaps: 105/1401 ( 7.5%)
# Score: 3036.5
#
#
#=======================================
BSNT_02270___ 1 ATGA----GATTAAAGTTTGGAA---AATTGATACAGGCCTTGTCACCGG 43
|||| .|||||| || ||||| ||.||| .|.|||
BPUM_1242___y 1 ATGAACCCAATTAAA------AAGCTAATTG--ACCGGC-----TATCGG 37
BSNT_02270___ 44 C---CCAGCTGATCGCATTATATTATTTTCTTGCAGTTACTGTGGCCGTT 90
| |||||||||.||..|.|||||||||||.||.||.||.||..|..||
BPUM_1242___y 38 CTTTCCAGCTGATTGCCCTTTATTATTTTCTCGCTGTAACCGTCTCACTT 87
BSNT_02270___ 91 ATATTGCTGAGTTTGCCGGCGGCCCATAAACCGGGGGCGGATTGGACGTT 140
||..|.||.||||||||.|..||.|||.||...||||.|.|.|||||.||
BPUM_1242___y 88 ATTCTTCTCAGTTTGCCAGTCGCTCATCAAGATGGGGTGAAGTGGACATT 137
BSNT_02270___ 141 TATTGATGCGCTTTTTACAGCTGTCAGTTCAGTCAGCGTAACGGGGCTGA 190
|||.|||||..|.|||||.||.||.|||.|.||.||.||.||.||.||.|
BPUM_1242___y 138 TATCGATGCATTATTTACGGCGGTGAGTGCTGTGAGTGTCACAGGACTTA 187
BSNT_02270___ 191 CGGTAGTTGATACAGCTGATACATTCAGCACAAT-----AGGGATTTTTA 235
|.||.||||||||..|..|.|||||.|| | |||.||.|..|
BPUM_1242___y 188 CTGTGGTTGATACTTCGCAAACATTTAG-----TGTGGCAGGTATGTGGA 232
BSNT_02270___ 236 TATTAGCATTTGTTCTGCAATTTGGCGGAATCGGAATTATGACGCTCGGA 285
|..|.||.|||||.||.|||.|.||.||.|||||.||||||||||||||.
BPUM_1242___y 233 TCCTTGCGTTTGTCCTTCAAATCGGGGGTATCGGCATTATGACGCTCGGT 282
BSNT_02270___ 286 ACGTTCATTTGGCTGATCATGGGAAAACGAATCGGGCTGAAAGAACGGAA 335
||.||..|.|||.|..|||||.|||||.|||||||..|.||||||.|.||
BPUM_1242___y 283 ACCTTTGTGTGGATTGTCATGCGAAAAAGAATCGGTATTAAAGAAAGAAA 332
BSNT_02270___ 336 GCTGATTATGGTTGATCAAAACCAATCCCAGTTTTCAGGAATTGTCAATC 385
|||.|||||||..|||||||||||...|.|.||.|||||||||||.||..
BPUM_1242___y 333 GCTCATTATGGCAGATCAAAACCAGAGCAATTTATCAGGAATTGTGAAAT 382
BSNT_02270___ 386 TGATGAAGCAGGTACTGTTTCTGATCTTGTGGATTGAATTTTTTGGCGGG 435
|.|||||||||||..|.|.|.|.||.|||...|||||.|||.|.|||||.
BPUM_1242___y 383 TAATGAAGCAGGTTTTATATTTAATTTTGCTCATTGAGTTTGTAGGCGGT 432
BSNT_02270___ 436 CTGATTCTCGGCACATA-TTTCTTAA--CCTACTATGACTCCTATCAGGA 482
|||||..|..|.|..|| |||||.|| ..|||.||| || |||..
BPUM_1242___y 433 CTGATCTTAAGTATGTATTTTCTCAAATATTACGATG-----TA-CAGAC 476
BSNT_02270___ 483 AGCTTATTTACACGGATTTTTTGCCAGTATCAGTGCAACGACAAACGGCG 532
|||.|..|||||.||.||.||..|.|||||.|||||.||.||.||.||.|
BPUM_1242___y 477 AGCATTCTTACATGGCTTCTTCTCAAGTATAAGTGCGACCACCAATGGTG 526
BSNT_02270___ 533 GATTTGATATTACCGGTAATTCGATGATTCCATTTCGCCAC------GAT 576
|.||.||||||||.||.||.|||.|.||.|||| || |||
BPUM_1242___y 527 GCTTCGATATTACAGGGAACTCGCTCATCCCAT------ACAAAGATGAT 570
BSNT_02270___ 577 TACTTTGTGCAGTTTATTACAATGCTTTTAATTATATTTGGAGCGATTGG 626
||.||.||.||.||||||||.|||||..|.||.||.|||||.||||||||
BPUM_1242___y 571 TATTTCGTCCAATTTATTACGATGCTGCTGATCATCTTTGGCGCGATTGG 620
BSNT_02270___ 627 ATTTCCCGTGCTTGTTGAAGTAAAGGATTTCCTGTTT--TC-------AA 667
.|||||.|||||.||.|||||||||||||.|.|.||| || ||
BPUM_1242___y 621 CTTTCCTGTGCTCGTGGAAGTAAAGGATTACTTATTTAATCAGGACCGAA 670
BSNT_02270___ 668 AGCAT-CGGCGTTATCCATTTACGCTTTTTACAAAGATCACGACGATTAC 716
||||| |..||||.| ||.|.||||||||.|||||.||||||||
BPUM_1242___y 671 AGCATGCATCGTTCT-------CGTTGTTTACAAAAATCACAACGATTAC 713
BSNT_02270___ 717 GTTCGGCTCA-CTT-GTC-TTGTTTGGAGCCATTGGCATCTTTGCCCTGG 763
|||.|| || ||| ||| ||| ||||.||.|||||.||.|.|||.||.|
BPUM_1242___y 714 GTTTGG--CAGCTTAGTCATTG-TTGGCGCTATTGGGATTTATGCTCTTG 760
BSNT_02270___ 764 AAGCAAACCATGC-GTTCGCG------GGAAA-ATCATGGCATGATATTT 805
||||| | |||..|| ||||| |.| |||||.||..|.|
BPUM_1242___y 761 AAGCA-------CGGTTTACGTTTTTAGGAAAGAGC-TGGCACGAAGTGT 802
BSNT_02270___ 806 TGTTTTTGTCCCTGTTTCAATCAACGGCAACCCGAAGCGGGGGACTGGCA 855
|.||||..||..||||||||||.||.||.||..||||.||||||||..|.
BPUM_1242___y 803 TATTTTATTCATTGTTTCAATCGACAGCTACAAGAAGTGGGGGACTTTCC 852
BSNT_02270___ 856 ACAATCGATATCAGCCAATTATCAGATTCCACACTCTTTTTTATTTGTGC 905
|||.|.|||||.|..|||||..||||..|.||.||.||.|||.|.|||..
BPUM_1242___y 853 ACATTAGATATTACTCAATTGACAGAACCGACGCTGTTATTTTTATGTCT 902
BSNT_02270___ 906 GCTGATGTTTATCGGAGCGTCGCCAAGCTCAGTCGGGGGAGGCATACGGA 955
.||.|||||||||||.||.||.||||||||.||||||||.||.||.||||
BPUM_1242___y 903 ACTCATGTTTATCGGGGCTTCTCCAAGCTCTGTCGGGGGCGGAATTCGGA 952
BSNT_02270___ 956 CAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGC 1005
||||.||.|||||..|.||..|.||.||..||||||||||||||||.||.
BPUM_1242___y 953 CAACCACGTTTGCCCTTAATTTACTCGCATTGTTTCATTTTGCCCGGGGA 1002
BSNT_02270___ 1006 AATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGAT 1055
||||||.||.||||..|.||||||.|.|||||.||.|..||.||..|.|.
BPUM_1242___y 1003 AATAAGTCCATAAAAATTTTCAAAAGAGAGCTGCATCAAGCAGATATTAA 1052
BSNT_02270___ 1056 GAAGTCGCTTGTTGTCACGATGATGGCGATCCTGCTCGTTTTTGGCGCGA 1105
.||.||.||..|.||.|||||||||||..|..|..|.||.|||||.||.|
BPUM_1242___y 1053 CAAATCTCTGATGGTGACGATGATGGCCTTTATATTGGTGTTTGGTGCTA 1102
BSNT_02270___ 1106 CACTCATTCTGACCATTA-CAGAAAAACATTCCCTGCTGGAGCTTTTGTT 1154
||.|| ||.|.|.|.||| |.||..|..||.|.||.||..|...|||.||
BPUM_1242___y 1103 CATTC-TTATTAACCTTATCCGAGCATAATACGCTTCTTCAAAATTTATT 1151
BSNT_02270___ 1155 TGAAGTGTGCTCGGCATTCGGTACAACCGGCCTGTCGCTTGGAATTACGG 1204
||||||.||.||.||.|||||.|||||.||.||.||..|.||.|||||
BPUM_1242___y 1152 TGAAGTCTGTTCTGCTTTCGGAACAACAGGTCTATCATTAGGGATTAC-- 1199
BSNT_02270___ 1205 CAGATTTGAGC-----AGTGTTGGAAAATGCGTCATTATGATTGTCATGT 1249
.|.||||| ..|.||||.||.||..||||||||||.|||||||
BPUM_1242___y 1200 ---CTCTGAGCTCTCTGTTTTTGGTAAGTGTATCATTATGATGGTCATGT 1246
BSNT_02270___ 1250 TTATCGGGCGAATCGGCATCCTGACCTTCCTGTATCTGATCGGAAGAAAG 1299
||||.||.||.||||||||.|..|.|||..|.|||.|.||.||..|||..
BPUM_1242___y 1247 TTATTGGACGTATCGGCATTCCAAGCTTTTTATATTTAATTGGCCGAAGA 1296
BSNT_02270___ 1300 GAAATTGAAGCGAACTATCACTATCCGAAAGAAAGAGTGATTATCGGATA 1349
||||..||||||||.|||||.|||||||||||..|.||.||.|||||.||
BPUM_1242___y 1297 GAAAGCGAAGCGAATTATCATTATCCGAAAGAGCGTGTCATCATCGGCTA 1346
BSNT_02270___ 1350 G 1350
.
BPUM_1242___y 1347 A 1347
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