Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02267 and BPUM_1239
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_02267___sspD.1.24716.seq
# -bsequence dna-align/BPUM_1239___sspD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02267___sspD-BPUM_1239___sspD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02267___sspD-BPUM_1239___sspD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02267___sspD
# 2: BPUM_1239___sspD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 200
# Identity: 148/200 (74.0%)
# Similarity: 148/200 (74.0%)
# Gaps: 10/200 ( 5.0%)
# Score: 538.5
#
#
#=======================================
BSNT_02267___ 1 ATGGCGAGCAGAAATAAACTCGTTGTTCCAGGGGTGGAGCAGGCACTAGA 50
|||||.|...|||||.|.||..|||||||.||.||.||.||.|||.||||
BPUM_1239___s 1 ATGGCAAATCGAAATCAGCTTCTTGTTCCTGGAGTAGAACAAGCATTAGA 50
BSNT_02267___ 51 CCAATTTAAACTCGAAGTGGCTCAAGAATTCGGTGTGAACCTTGGTTCTG 100
.|||||||||..|||..|.|||||||||||.||.||||..||.|||||.|
BPUM_1239___s 51 TCAATTTAAATACGAGATCGCTCAAGAATTTGGCGTGACTCTCGGTTCAG 100
BSNT_02267___ 101 ATACAGTCGCACGCGCTAACGGCTCTGTAGGCGGAGAAATGACAAAGCGG 150
|||||||||||||.||.|||||.|||||.|||||.|||||.||.||..|.
BPUM_1239___s 101 ATACAGTCGCACGTGCAAACGGTTCTGTTGGCGGTGAAATTACTAAAAGA 150
BSNT_02267___ 151 CTGGTACAGCAAGCACAATCACAATTAAATGG-----CACAACTAAATAA 195
||.||.||.||.||.||||||| |||||| || |.||||||||
BPUM_1239___s 151 CTCGTTCAACAGGCTCAATCAC----AAATGGGTAATCA-ATCTAAATAA 195
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