Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02265 and BPUM_1238

See Amino acid alignment / Visit BSNT_02265 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:43
# Commandline: needle
#    -asequence dna-align/BSNT_02265___ykrI.1.24716.seq
#    -bsequence dna-align/BPUM_1238___rsgI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02265___ykrI-BPUM_1238___rsgI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02265___ykrI-BPUM_1238___rsgI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02265___ykrI
# 2: BPUM_1238___rsgI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1352
# Identity:     763/1352 (56.4%)
# Similarity:   763/1352 (56.4%)
# Gaps:         373/1352 (27.6%)
# Score: 1928.5
# 
#
#=======================================

BSNT_02265___      1 ATGAGAAGAGGGATTATAGTAGAGAAAAATAAAAAATTCGTCACGTTGCT     50
                     |||||||||||.|||||||||||.|||||.|||||||..||||||.||||
BPUM_1238___r      1 ATGAGAAGAGGCATTATAGTAGAAAAAAACAAAAAATATGTCACGCTGCT     50

BSNT_02265___     51 GACCCCTGACGGACAATTTTTAAAAGC---CAAAA-ATGATCGACACAGC     96
                     |||||||||.|||||||||.|    ||   ||||| ||||     |||||
BPUM_1238___r     51 GACCCCTGATGGACAATTTCT----GCGGACAAAATATGA-----ACAGC     91

BSNT_02265___     97 -----TATGAAATCGGAGAAGAAAT--CATGCTTCCGAGTGAAACACGCA    139
                          |||||||||||..|||||.|  |||  ||||||.||||.||||..
BPUM_1238___r     92 AAGATTATGAAATCGGTCAAGAAGTGACAT--TTCCGAATGAATCACGTC    139

BSNT_02265___    140 TGG---GCAGAAGGGCCAGCTTTTTTGA-----TTTTTTTAAACTGCGCC    181
                     |.|   |.|.||..|||.|.||||||||     ||..||||     ||.|
BPUM_1238___r    140 TCGAAAGAAAAAAAGCCGGTTTTTTTGACTTGCTTCGTTTA-----CGTC    184

BSNT_02265___    182 CTTTCAAAATG--GGGATTTTTACGATGACTGCTATTATGCTCTTTATTT    229
                     ||||  |||||  ||.||..|..|.||..|.||.|||||..||.|.||||
BPUM_1238___r    185 CTTT--AAATGCAGGAATCCTATCAATCGCAGCGATTATTGTCGTGATTT    232

BSNT_02265___    230 TTA-TAGTTCTCCCCGTTTTTTCTAATAATAAGGCCTATGCGTATATGAC    278
                     ||| || |..|.||...|||.||.|.|.|.||.||.|||||.||||||||
BPUM_1238___r    233 TTACTA-TGATGCCATCTTTCTCAAGTCAAAAAGCATATGCATATATGAC    281

BSNT_02265___    279 AATCGATATCAATCCAAGCGTCGAAATG--GCGTTAAACAGCGATTATGA    326
                     |||.||.||.|||||||||.|.|||.||  || ||.|.|| |.||||..|
BPUM_1238___r    282 AATTGACATTAATCCAAGCTTTGAACTGAAGC-TTGATCA-CAATTACCA    329

BSNT_02265___    327 AGTGATTGAACTGACGCCTCTAAACGATGA-GGGACAGAAG----GTCGT    371
                     ||||||||...|.||.||.||.||..|.|| |.||.|.|||    |.|..
BPUM_1238___r    330 AGTGATTGGTGTCACACCACTGAATAAAGATGCGAAACAAGTACTGGCCA    379

BSNT_02265___    372 GAATGATATAGATGATTGGGAGAA----GAC-TGATTTTAAAAAGGTGAT    416
                     |.||||     |.||||.|||.||    ||| |||    ..||||.||  
BPUM_1238___r    380 GTATGA-----AGGATTTGGAAAAAAGCGACATGA----CCAAAGTTG--    418

BSNT_02265___    417 TG-ACGATATTATAACCGACTGCAGTGAACACGGGTATGTAAAAAAATCG    465
                     || |.||.||.|||...|||||...|.||.|.||.||.||.||..|.||.
BPUM_1238___r    419 TGCAGGAAATCATAGATGACTGTGATAAAAAAGGTTACGTGAACCATTCT    468

BSNT_02265___    466 AA-AGAAATATT--GATTTCCACTGTTTATGAAAACA--CAGAAGACAAT    510
                     || ||   ||||  .|||||.||.|||||||||||||  |||  |||.||
BPUM_1238___r    469 AAGAG---TATTTATATTTCAACGGTTTATGAAAACAAGCAG--GACCAT    513

BSNT_02265___    511 ACATATAAAAAGGCTGTGAAAA--------AACAGCTGAATGATGTGACT    552
                     ||||||||||.....||.||||        ||||.|      ||.|  ||
BPUM_1238___r    514 ACATATAAAACCAACGTCAAAAGTAAAATTAACACC------ATTT--CT    555

BSNT_02265___    553 GAAAAATATAAAA----CGACATAC-CGCATGGAATCTCTCG--AGTCAG    595
                     |...|||||.|||    ||| .||| .|| |.|||.||.|.|  |||  |
BPUM_1238___r    556 GGTGAATATCAAAAGCGCGA-TTACAAGC-TAGAAACTGTAGAAAGT--G    601

BSNT_02265___    596 ATATGCAAACGAGGGAAAAAGCGAAGAAAGAAGGCGTCTCAACAGGCAGC    645
                     |..||.||||.||.||||||||..|.||.|.||||.|.||||||||||..
BPUM_1238___r    602 ACCTGGAAACAAGAGAAAAAGCTCAAAAGGCAGGCATTTCAACAGGCACA    651

BSNT_02265___    646 TACAT--CAAATCAAATGAAAAGAATGACAATAAAGATATAAAAGATGAC    693
                     ||.||  .|||||||  ||||.|.|.|||   |||||   |.||||.|||
BPUM_1238___r    652 TATATTAGAAATCAA--GAAATGCAAGAC---AAAGA---ACAAGAAGAC    693

BSNT_02265___    694 -TCCAGCAAACCATCCGGGGAAGAGGATCA--AAAGAGTGATG-------    733
                      |.||  |||..||     |||||.|  ||  |.|||||||||       
BPUM_1238___r    694 ATTCA--AAAGGAT-----GAAGACG--CAGCAGAGAGTGATGCTGTCAA    734

BSNT_02265___    734 --------------AAAATGAGGATGAAAAC---ACCGATCAAACTGACA    766
                                   ||||.||.||||||.||   .|.||||||   ||||
BPUM_1238___r    735 AGAAGAAGAGCCTAAAAAAGATGATGAAGACCAAGCAGATCAA---GACA    781

BSNT_02265___    767 CCC---AGGACAGCAAGCAAGGAGATA--------ATGAA--CAGCTGAA    803
                     ..|   |.||||.||||..|||.||||        |||||  |||.|.||
BPUM_1238___r    782 AACAAGAAGACATCAAGTCAGGCGATAGCGAAGAGATGAAGCCAGATCAA    831

BSNT_02265___    804 TGATGCGGATTCCGGA----------------------GACCAGAAA---    828
                      ||.||    |||.||                      ||||| |||   
BPUM_1238___r    832 -GAGGC----TCCTGAAGCTGAAGACAAAGAGCAAAAGGACCA-AAAGAG    875

BSNT_02265___    829 -GAAGAGAAAGCGGA-----TGA----CCAGAT-----------TGATGA    857
                      ||||||.||  |||     |||    ||..||           ||||||
BPUM_1238___r    876 GGAAGAGCAA--GGATCTATTGAAAAGCCTCATCAAACAAAACCTGATGA    923

BSNT_02265___    858 TAGTGACAAAGATAAAAAAATAAAGGAATCAGATGAAAA--------CAC    899
                     ||....||||||.||..|||||||      |||.|||||        |  
BPUM_1238___r    924 TAAAAGCAAAGACAATCAAATAAA------AGAGGAAAAGGATCGTTC--    965

BSNT_02265___    900 AAATACCGAAAAAGATGGGGACCATGAGCAAACCCCAATACAA-------    942
                        ||.|||.|||            ||.||||    ||.|.||       
BPUM_1238___r    966 ---TATCGATAAA------------GAACAAA----AAAAAAATCACTCG    996

BSNT_02265___    943 ---GATCCTCAAGATAAAGGAAATGAAAA------------TAACGGCGC    977
                        ||.|||.|.||.|||.|.|||..|||            |...|||||
BPUM_1238___r    997 ACGGAACCTGATGACAAAAGGAATCCAAACGGCACATCGCGTGGTGGCGC   1046

BSNT_02265___    978 TGACAAG--GGCCAAAGCCAATATCACAGGGACTGGAA-CAATGGTGAAC   1024
                     |||.|||  .||.|||   ||.|.|     |||.|||| |||        
BPUM_1238___r   1047 TGAAAAGCACGCAAAA---AAAAAC-----GACAGGAATCAA--------   1080

BSNT_02265___   1025 AAGGCAAG-AACCGTTCT----TCG--------------TCCAGAAG---   1052
                          ||| |.||||.||    |||              |..|||||   
BPUM_1238___r   1081 -----AAGCAGCCGTCCTCTGATCGAAAAAAAGAACATATGAAGAAGCAA   1125

BSNT_02265___   1053 GGATAACGCTTCAGACCG---ACGTAATCCAAACGGCTACAGCAGTGATA   1099
                     ||| ||.|.|.|  ||||   .||| |||               ||||.|
BPUM_1238___r   1126 GGA-AAAGGTGC--ACCGTCCCCGT-ATC---------------GTGAGA   1156

BSNT_02265___   1100 A----TAATTCAGCTCA-AAATGAAGATTCGCCGAGTGCCCCCGGCGAAT   1144
                     |    ||  |.|||.|| |.|||||                     .|||
BPUM_1238___r   1157 ACTGGTA--TGAGCACACATATGAA---------------------CAAT   1183

BSNT_02265___   1145 AA   1146
                     ||
BPUM_1238___r   1184 AA   1185


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