Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02265 and BPUM_1238
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_02265___ykrI.1.24716.seq
# -bsequence dna-align/BPUM_1238___rsgI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02265___ykrI-BPUM_1238___rsgI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02265___ykrI-BPUM_1238___rsgI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02265___ykrI
# 2: BPUM_1238___rsgI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1352
# Identity: 763/1352 (56.4%)
# Similarity: 763/1352 (56.4%)
# Gaps: 373/1352 (27.6%)
# Score: 1928.5
#
#
#=======================================
BSNT_02265___ 1 ATGAGAAGAGGGATTATAGTAGAGAAAAATAAAAAATTCGTCACGTTGCT 50
|||||||||||.|||||||||||.|||||.|||||||..||||||.||||
BPUM_1238___r 1 ATGAGAAGAGGCATTATAGTAGAAAAAAACAAAAAATATGTCACGCTGCT 50
BSNT_02265___ 51 GACCCCTGACGGACAATTTTTAAAAGC---CAAAA-ATGATCGACACAGC 96
|||||||||.|||||||||.| || ||||| |||| |||||
BPUM_1238___r 51 GACCCCTGATGGACAATTTCT----GCGGACAAAATATGA-----ACAGC 91
BSNT_02265___ 97 -----TATGAAATCGGAGAAGAAAT--CATGCTTCCGAGTGAAACACGCA 139
|||||||||||..|||||.| ||| ||||||.||||.||||..
BPUM_1238___r 92 AAGATTATGAAATCGGTCAAGAAGTGACAT--TTCCGAATGAATCACGTC 139
BSNT_02265___ 140 TGG---GCAGAAGGGCCAGCTTTTTTGA-----TTTTTTTAAACTGCGCC 181
|.| |.|.||..|||.|.|||||||| ||..|||| ||.|
BPUM_1238___r 140 TCGAAAGAAAAAAAGCCGGTTTTTTTGACTTGCTTCGTTTA-----CGTC 184
BSNT_02265___ 182 CTTTCAAAATG--GGGATTTTTACGATGACTGCTATTATGCTCTTTATTT 229
|||| ||||| ||.||..|..|.||..|.||.|||||..||.|.||||
BPUM_1238___r 185 CTTT--AAATGCAGGAATCCTATCAATCGCAGCGATTATTGTCGTGATTT 232
BSNT_02265___ 230 TTA-TAGTTCTCCCCGTTTTTTCTAATAATAAGGCCTATGCGTATATGAC 278
||| || |..|.||...|||.||.|.|.|.||.||.|||||.||||||||
BPUM_1238___r 233 TTACTA-TGATGCCATCTTTCTCAAGTCAAAAAGCATATGCATATATGAC 281
BSNT_02265___ 279 AATCGATATCAATCCAAGCGTCGAAATG--GCGTTAAACAGCGATTATGA 326
|||.||.||.|||||||||.|.|||.|| || ||.|.|| |.||||..|
BPUM_1238___r 282 AATTGACATTAATCCAAGCTTTGAACTGAAGC-TTGATCA-CAATTACCA 329
BSNT_02265___ 327 AGTGATTGAACTGACGCCTCTAAACGATGA-GGGACAGAAG----GTCGT 371
||||||||...|.||.||.||.||..|.|| |.||.|.||| |.|..
BPUM_1238___r 330 AGTGATTGGTGTCACACCACTGAATAAAGATGCGAAACAAGTACTGGCCA 379
BSNT_02265___ 372 GAATGATATAGATGATTGGGAGAA----GAC-TGATTTTAAAAAGGTGAT 416
|.|||| |.||||.|||.|| ||| ||| ..||||.||
BPUM_1238___r 380 GTATGA-----AGGATTTGGAAAAAAGCGACATGA----CCAAAGTTG-- 418
BSNT_02265___ 417 TG-ACGATATTATAACCGACTGCAGTGAACACGGGTATGTAAAAAAATCG 465
|| |.||.||.|||...|||||...|.||.|.||.||.||.||..|.||.
BPUM_1238___r 419 TGCAGGAAATCATAGATGACTGTGATAAAAAAGGTTACGTGAACCATTCT 468
BSNT_02265___ 466 AA-AGAAATATT--GATTTCCACTGTTTATGAAAACA--CAGAAGACAAT 510
|| || |||| .|||||.||.||||||||||||| ||| |||.||
BPUM_1238___r 469 AAGAG---TATTTATATTTCAACGGTTTATGAAAACAAGCAG--GACCAT 513
BSNT_02265___ 511 ACATATAAAAAGGCTGTGAAAA--------AACAGCTGAATGATGTGACT 552
||||||||||.....||.|||| ||||.| ||.| ||
BPUM_1238___r 514 ACATATAAAACCAACGTCAAAAGTAAAATTAACACC------ATTT--CT 555
BSNT_02265___ 553 GAAAAATATAAAA----CGACATAC-CGCATGGAATCTCTCG--AGTCAG 595
|...|||||.||| ||| .||| .|| |.|||.||.|.| ||| |
BPUM_1238___r 556 GGTGAATATCAAAAGCGCGA-TTACAAGC-TAGAAACTGTAGAAAGT--G 601
BSNT_02265___ 596 ATATGCAAACGAGGGAAAAAGCGAAGAAAGAAGGCGTCTCAACAGGCAGC 645
|..||.||||.||.||||||||..|.||.|.||||.|.||||||||||..
BPUM_1238___r 602 ACCTGGAAACAAGAGAAAAAGCTCAAAAGGCAGGCATTTCAACAGGCACA 651
BSNT_02265___ 646 TACAT--CAAATCAAATGAAAAGAATGACAATAAAGATATAAAAGATGAC 693
||.|| .||||||| ||||.|.|.||| ||||| |.||||.|||
BPUM_1238___r 652 TATATTAGAAATCAA--GAAATGCAAGAC---AAAGA---ACAAGAAGAC 693
BSNT_02265___ 694 -TCCAGCAAACCATCCGGGGAAGAGGATCA--AAAGAGTGATG------- 733
|.|| |||..|| |||||.| || |.|||||||||
BPUM_1238___r 694 ATTCA--AAAGGAT-----GAAGACG--CAGCAGAGAGTGATGCTGTCAA 734
BSNT_02265___ 734 --------------AAAATGAGGATGAAAAC---ACCGATCAAACTGACA 766
||||.||.||||||.|| .|.|||||| ||||
BPUM_1238___r 735 AGAAGAAGAGCCTAAAAAAGATGATGAAGACCAAGCAGATCAA---GACA 781
BSNT_02265___ 767 CCC---AGGACAGCAAGCAAGGAGATA--------ATGAA--CAGCTGAA 803
..| |.||||.||||..|||.|||| ||||| |||.|.||
BPUM_1238___r 782 AACAAGAAGACATCAAGTCAGGCGATAGCGAAGAGATGAAGCCAGATCAA 831
BSNT_02265___ 804 TGATGCGGATTCCGGA----------------------GACCAGAAA--- 828
||.|| |||.|| ||||| |||
BPUM_1238___r 832 -GAGGC----TCCTGAAGCTGAAGACAAAGAGCAAAAGGACCA-AAAGAG 875
BSNT_02265___ 829 -GAAGAGAAAGCGGA-----TGA----CCAGAT-----------TGATGA 857
||||||.|| ||| ||| ||..|| ||||||
BPUM_1238___r 876 GGAAGAGCAA--GGATCTATTGAAAAGCCTCATCAAACAAAACCTGATGA 923
BSNT_02265___ 858 TAGTGACAAAGATAAAAAAATAAAGGAATCAGATGAAAA--------CAC 899
||....||||||.||..||||||| |||.||||| |
BPUM_1238___r 924 TAAAAGCAAAGACAATCAAATAAA------AGAGGAAAAGGATCGTTC-- 965
BSNT_02265___ 900 AAATACCGAAAAAGATGGGGACCATGAGCAAACCCCAATACAA------- 942
||.|||.||| ||.|||| ||.|.||
BPUM_1238___r 966 ---TATCGATAAA------------GAACAAA----AAAAAAATCACTCG 996
BSNT_02265___ 943 ---GATCCTCAAGATAAAGGAAATGAAAA------------TAACGGCGC 977
||.|||.|.||.|||.|.|||..||| |...|||||
BPUM_1238___r 997 ACGGAACCTGATGACAAAAGGAATCCAAACGGCACATCGCGTGGTGGCGC 1046
BSNT_02265___ 978 TGACAAG--GGCCAAAGCCAATATCACAGGGACTGGAA-CAATGGTGAAC 1024
|||.||| .||.||| ||.|.| |||.|||| |||
BPUM_1238___r 1047 TGAAAAGCACGCAAAA---AAAAAC-----GACAGGAATCAA-------- 1080
BSNT_02265___ 1025 AAGGCAAG-AACCGTTCT----TCG--------------TCCAGAAG--- 1052
||| |.||||.|| ||| |..|||||
BPUM_1238___r 1081 -----AAGCAGCCGTCCTCTGATCGAAAAAAAGAACATATGAAGAAGCAA 1125
BSNT_02265___ 1053 GGATAACGCTTCAGACCG---ACGTAATCCAAACGGCTACAGCAGTGATA 1099
||| ||.|.|.| |||| .||| ||| ||||.|
BPUM_1238___r 1126 GGA-AAAGGTGC--ACCGTCCCCGT-ATC---------------GTGAGA 1156
BSNT_02265___ 1100 A----TAATTCAGCTCA-AAATGAAGATTCGCCGAGTGCCCCCGGCGAAT 1144
| || |.|||.|| |.||||| .|||
BPUM_1238___r 1157 ACTGGTA--TGAGCACACATATGAA---------------------CAAT 1183
BSNT_02265___ 1145 AA 1146
||
BPUM_1238___r 1184 AA 1185
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