Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02261 and BPUM_1236
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_02261___ykoY.1.24716.seq
# -bsequence dna-align/BPUM_1236___ykoY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02261___ykoY-BPUM_1236___ykoY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02261___ykoY-BPUM_1236___ykoY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02261___ykoY
# 2: BPUM_1236___ykoY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1019
# Identity: 586/1019 (57.5%)
# Similarity: 586/1019 (57.5%)
# Gaps: 271/1019 (26.6%)
# Score: 1923.0
#
#
#=======================================
BSNT_02261___ 1 ATGTATTCCGGAAACAAAGTCGTCATTTCATGGATTGTATCCATCGGCTT 50
BPUM_1236___y 0 -------------------------------------------------- 0
BSNT_02261___ 51 TGTTGGCATGCCTGAATTCATGTCTAGCAAGACCTTTGCCTTATGTCGGC 100
BPUM_1236___y 0 -------------------------------------------------- 0
BSNT_02261___ 101 AAAGGTCTTTTTTGCATGGTCCGGCCGGCATAAGATCGGATGAAGAGAAA 150
BPUM_1236___y 0 -------------------------------------------------- 0
BSNT_02261___ 151 GAAAACAACTTTTTTGGGAGGGTATCATTTATGGATGCAGC-ATTATTAT 199
||||||||||| |||||| |
BPUM_1236___y 1 ------------------------------ATGGATGCAGCAATTATT-T 19
BSNT_02261___ 200 TAGAGTATGGTTGGGTTCTTCTCGTCTTGATCGGGCTGGAAGGGATTTTA 249
|||||||.||.||||||||||||||..||||.||..|.|||||.||||||
BPUM_1236___y 20 TAGAGTACGGGTGGGTTCTTCTCGTACTGATTGGATTAGAAGGAATTTTA 69
BSNT_02261___ 250 GCCGCCGATAACGCGCTGGTTATGGCGGTAATGGTAAAACATTTGCCGGA 299
|||||.|||||.|||||.||.|||||.||.|||||.|||||..|.||.||
BPUM_1236___y 70 GCCGCTGATAATGCGCTTGTCATGGCTGTGATGGTGAAACACCTTCCTGA 119
BSNT_02261___ 300 GGAAA--AAAGAAAAAAAGCGTTATTTTATGGATTGGCAGGGGCTTTTGT 347
||| ||||||||||.||..|.|||||.||..|.||.||.||.|||||
BPUM_1236___y 120 --AAAGCAAAGAAAAAAGGCACTGTTTTACGGGCTTGCGGGTGCATTTGT 167
BSNT_02261___ 348 TCTGCGATTTGGCTCTTTATTCGCCATTTCATTTTTGGTCAACGTATGGC 397
..||||||||||.|||.||||....|||||.|||||.||..|.||.||||
BPUM_1236___y 168 CATGCGATTTGGTTCTCTATTTCTTATTTCGTTTTTAGTGGATGTGTGGC 217
BSNT_02261___ 398 AGGTTCAAGCGATTGGCGCGATCTATTTGCTGTATATCTCAGCAAGCCAC 447
|.||||||||.||||||||.||.|||.|.||.|||||.|| ||..|..|
BPUM_1236___y 218 AAGTTCAAGCCATTGGCGCAATTTATCTTCTTTATATTTC--CATTCACC 265
BSNT_02261___ 448 TTATTGAAAAGAT---ATGTATTTAAGAAAGA------AGACAC--ACAT 486
.||||..||| || |.||||||||||||.| |||||| ||||
BPUM_1236___y 266 ATATTTTAAA-ATCGCACGTATTTAAGAAAAAGGAATCAGACACTAACAT 314
BSNT_02261___ 487 AAAGAGACGAAGCAAAGCGGTTTTTGGCCGACTGTTTTAAAAGTTGAACT 536
||||||||||||.||.|||.|.||.|||.|||||||.||.||
BPUM_1236___y 315 --------GAAGCAAAGCGGATTCTGGGCAACAGTTGTAAAAGTCGAGCT 356
BSNT_02261___ 537 GGCAGATATCGCGTTTGCTGTTGATTCCATCTTAGCAGCAGTAGCGCTGG 586
.||.||.|||||.||||||||.||||||||||||||.||.||.||..|.|
BPUM_1236___y 357 TGCTGACATCGCTTTTGCTGTCGATTCCATCTTAGCGGCCGTCGCATTAG 406
BSNT_02261___ 587 CGGTTACACTTCCTGGGACATCACTCCCGAAGATCGGCGGACTTGACGGA 636
|.||.|||||.||....|||...||.|||.|.|||||.||||||||.||.
BPUM_1236___y 407 CCGTAACACTGCCAAAAACAAGTCTTCCGCAAATCGGTGGACTTGATGGT 456
BSNT_02261___ 637 GGACAATTTCTCGTCATTTTGGCCGGCGGTATCATCGGACTGGTGATCAT 686
||.||||||.|.||||||.|....||.||||||||.||..||.|.|||||
BPUM_1236___y 457 GGTCAATTTATTGTCATTCTTTTAGGTGGTATCATAGGTTTGATCATCAT 506
BSNT_02261___ 687 GCGGTTTGCGGCTTCCATGTTTGTGAAGTTATTAAAGGAAC--GTCCAAG 734
|.|.|||||.||..|..|.||||||||.||..|.|| ||| |.||.||
BPUM_1236___y 507 GAGATTTGCAGCGACGGTCTTTGTGAAATTGCTCAA--AACAAGACCGAG 554
BSNT_02261___ 735 CCTAGAAACAGCAGCCTTTGTGATTGTCGGCTGGGTCGGAGTGAAGCT-- 782
||||||||||||.||.|||||.||||||||.|||||.||.||||||||
BPUM_1236___y 555 CCTAGAAACAGCTGCTTTTGTCATTGTCGGGTGGGTTGGTGTGAAGCTCA 604
BSNT_02261___ 783 TGCTTTATATACGCTTG-CCCATCGCGACATAGCGGT----TGT-TTCTG 826
.||||||||.|| || |.||||..|.||| .||| ||| .|||
BPUM_1236___y 605 CGCTTTATACAC---TGTCACATCCAGCCAT--TGGTATCGTGTCCTCT- 648
BSNT_02261___ 827 AGCACTTTATTCATTCTGGAAC---ATGGAAGCTGATATTCTGG--GGTG 871
||.||||||||||| ||| ||||||..||||.|||||| .|||
BPUM_1236___y 649 --CATTTTATTCATTC---AACATTATGGAAAGTGATTTTCTGGACAGTG 693
BSNT_02261___ 872 TCTTAGCAGCAATCGCGG--TTTGCGGCTGGTTTATGTCAGGT-----GG 914
|||..| |||||.||.| ||| |||||||||.|.|||.|| ..
BPUM_1236___y 694 -CTTCTC-GCAATTGCAGCATTT--GGCTGGTTTTTATCAAGTCCATCAA 739
BSNT_02261___ 915 GAAAAAACAGCCGGAGGGCGCACAAAACGAACAAAG---AAACA----GC 957
||||| ||.|||| |||.||..||| ||||| |.
BPUM_1236___y 740 GAAAA-------GGCGGGC------AACAAATCAAGGAAAAACAAGAGGA 776
BSNT_02261___ 958 AC-CCGTGAACGGGCGTAA 975
|| ||..||| |.|||.
BPUM_1236___y 777 ACGCCTAGAA---GAGTAG 792
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