Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02261 and BPUM_1236

See Amino acid alignment / Visit BSNT_02261 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:43
# Commandline: needle
#    -asequence dna-align/BSNT_02261___ykoY.1.24716.seq
#    -bsequence dna-align/BPUM_1236___ykoY.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02261___ykoY-BPUM_1236___ykoY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02261___ykoY-BPUM_1236___ykoY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02261___ykoY
# 2: BPUM_1236___ykoY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1019
# Identity:     586/1019 (57.5%)
# Similarity:   586/1019 (57.5%)
# Gaps:         271/1019 (26.6%)
# Score: 1923.0
# 
#
#=======================================

BSNT_02261___      1 ATGTATTCCGGAAACAAAGTCGTCATTTCATGGATTGTATCCATCGGCTT     50
                                                                       
BPUM_1236___y      0 --------------------------------------------------      0

BSNT_02261___     51 TGTTGGCATGCCTGAATTCATGTCTAGCAAGACCTTTGCCTTATGTCGGC    100
                                                                       
BPUM_1236___y      0 --------------------------------------------------      0

BSNT_02261___    101 AAAGGTCTTTTTTGCATGGTCCGGCCGGCATAAGATCGGATGAAGAGAAA    150
                                                                       
BPUM_1236___y      0 --------------------------------------------------      0

BSNT_02261___    151 GAAAACAACTTTTTTGGGAGGGTATCATTTATGGATGCAGC-ATTATTAT    199
                                                   ||||||||||| |||||| |
BPUM_1236___y      1 ------------------------------ATGGATGCAGCAATTATT-T     19

BSNT_02261___    200 TAGAGTATGGTTGGGTTCTTCTCGTCTTGATCGGGCTGGAAGGGATTTTA    249
                     |||||||.||.||||||||||||||..||||.||..|.|||||.||||||
BPUM_1236___y     20 TAGAGTACGGGTGGGTTCTTCTCGTACTGATTGGATTAGAAGGAATTTTA     69

BSNT_02261___    250 GCCGCCGATAACGCGCTGGTTATGGCGGTAATGGTAAAACATTTGCCGGA    299
                     |||||.|||||.|||||.||.|||||.||.|||||.|||||..|.||.||
BPUM_1236___y     70 GCCGCTGATAATGCGCTTGTCATGGCTGTGATGGTGAAACACCTTCCTGA    119

BSNT_02261___    300 GGAAA--AAAGAAAAAAAGCGTTATTTTATGGATTGGCAGGGGCTTTTGT    347
                       |||  ||||||||||.||..|.|||||.||..|.||.||.||.|||||
BPUM_1236___y    120 --AAAGCAAAGAAAAAAGGCACTGTTTTACGGGCTTGCGGGTGCATTTGT    167

BSNT_02261___    348 TCTGCGATTTGGCTCTTTATTCGCCATTTCATTTTTGGTCAACGTATGGC    397
                     ..||||||||||.|||.||||....|||||.|||||.||..|.||.||||
BPUM_1236___y    168 CATGCGATTTGGTTCTCTATTTCTTATTTCGTTTTTAGTGGATGTGTGGC    217

BSNT_02261___    398 AGGTTCAAGCGATTGGCGCGATCTATTTGCTGTATATCTCAGCAAGCCAC    447
                     |.||||||||.||||||||.||.|||.|.||.|||||.||  ||..|..|
BPUM_1236___y    218 AAGTTCAAGCCATTGGCGCAATTTATCTTCTTTATATTTC--CATTCACC    265

BSNT_02261___    448 TTATTGAAAAGAT---ATGTATTTAAGAAAGA------AGACAC--ACAT    486
                     .||||..||| ||   |.||||||||||||.|      ||||||  ||||
BPUM_1236___y    266 ATATTTTAAA-ATCGCACGTATTTAAGAAAAAGGAATCAGACACTAACAT    314

BSNT_02261___    487 AAAGAGACGAAGCAAAGCGGTTTTTGGCCGACTGTTTTAAAAGTTGAACT    536
                             ||||||||||||.||.|||.|.||.|||.|||||||.||.||
BPUM_1236___y    315 --------GAAGCAAAGCGGATTCTGGGCAACAGTTGTAAAAGTCGAGCT    356

BSNT_02261___    537 GGCAGATATCGCGTTTGCTGTTGATTCCATCTTAGCAGCAGTAGCGCTGG    586
                     .||.||.|||||.||||||||.||||||||||||||.||.||.||..|.|
BPUM_1236___y    357 TGCTGACATCGCTTTTGCTGTCGATTCCATCTTAGCGGCCGTCGCATTAG    406

BSNT_02261___    587 CGGTTACACTTCCTGGGACATCACTCCCGAAGATCGGCGGACTTGACGGA    636
                     |.||.|||||.||....|||...||.|||.|.|||||.||||||||.||.
BPUM_1236___y    407 CCGTAACACTGCCAAAAACAAGTCTTCCGCAAATCGGTGGACTTGATGGT    456

BSNT_02261___    637 GGACAATTTCTCGTCATTTTGGCCGGCGGTATCATCGGACTGGTGATCAT    686
                     ||.||||||.|.||||||.|....||.||||||||.||..||.|.|||||
BPUM_1236___y    457 GGTCAATTTATTGTCATTCTTTTAGGTGGTATCATAGGTTTGATCATCAT    506

BSNT_02261___    687 GCGGTTTGCGGCTTCCATGTTTGTGAAGTTATTAAAGGAAC--GTCCAAG    734
                     |.|.|||||.||..|..|.||||||||.||..|.||  |||  |.||.||
BPUM_1236___y    507 GAGATTTGCAGCGACGGTCTTTGTGAAATTGCTCAA--AACAAGACCGAG    554

BSNT_02261___    735 CCTAGAAACAGCAGCCTTTGTGATTGTCGGCTGGGTCGGAGTGAAGCT--    782
                     ||||||||||||.||.|||||.||||||||.|||||.||.||||||||  
BPUM_1236___y    555 CCTAGAAACAGCTGCTTTTGTCATTGTCGGGTGGGTTGGTGTGAAGCTCA    604

BSNT_02261___    783 TGCTTTATATACGCTTG-CCCATCGCGACATAGCGGT----TGT-TTCTG    826
                     .||||||||.||   || |.||||..|.|||  .|||    ||| .||| 
BPUM_1236___y    605 CGCTTTATACAC---TGTCACATCCAGCCAT--TGGTATCGTGTCCTCT-    648

BSNT_02261___    827 AGCACTTTATTCATTCTGGAAC---ATGGAAGCTGATATTCTGG--GGTG    871
                       ||.|||||||||||   |||   ||||||..||||.||||||  .|||
BPUM_1236___y    649 --CATTTTATTCATTC---AACATTATGGAAAGTGATTTTCTGGACAGTG    693

BSNT_02261___    872 TCTTAGCAGCAATCGCGG--TTTGCGGCTGGTTTATGTCAGGT-----GG    914
                      |||..| |||||.||.|  |||  |||||||||.|.|||.||     ..
BPUM_1236___y    694 -CTTCTC-GCAATTGCAGCATTT--GGCTGGTTTTTATCAAGTCCATCAA    739

BSNT_02261___    915 GAAAAAACAGCCGGAGGGCGCACAAAACGAACAAAG---AAACA----GC    957
                     |||||       ||.||||      |||.||..|||   |||||    |.
BPUM_1236___y    740 GAAAA-------GGCGGGC------AACAAATCAAGGAAAAACAAGAGGA    776

BSNT_02261___    958 AC-CCGTGAACGGGCGTAA    975
                     || ||..|||   |.|||.
BPUM_1236___y    777 ACGCCTAGAA---GAGTAG    792


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