Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02258 and BPUM_1235
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_02258___ykoX.1.24716.seq
# -bsequence dna-align/BPUM_1235___ykoX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02258___ykoX-BPUM_1235___ykoX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02258___ykoX-BPUM_1235___ykoX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02258___ykoX
# 2: BPUM_1235___ykoX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 660
# Identity: 431/660 (65.3%)
# Similarity: 431/660 (65.3%)
# Gaps: 69/660 (10.5%)
# Score: 1353.5
#
#
#=======================================
BSNT_02258___ 1 GTGGCT----ATCGAAGAGCTGGTTATGTCATGGATA---GAAGCATTTA 43
|.|.| ||||||||..|..||||.||.| || ||.||.||||
BPUM_1235___y 1 -TTGATAAACATCGAAGATTTTATTATTTCTT---TAGCTGATGCCTTTA 46
BSNT_02258___ 44 AAAGCTTATCTTATTTTGGAATATTTCTAGCGCTCAGTATTGAGTTTATC 93
|.|.|||.||.||.|||||.||.|||||.||..|..|||||||.|||.|.
BPUM_1235___y 47 AGAACTTGTCGTACTTTGGCATCTTTCTTGCATTATGTATTGAATTTGTT 96
BSNT_02258___ 94 CCGGCCGAAGTCGTCTTGCCGCTTGCGGGCTATTGGGTATCTAAAGGCGA 143
||.||.|||||.||..||||.||||||||.||.|||||.||.|||||.||
BPUM_1235___y 97 CCTGCTGAAGTGGTTCTGCCTCTTGCGGGTTACTGGGTCTCCAAAGGGGA 146
BSNT_02258___ 144 TATGACACTTGCCGGCGTTGTTTTGGCA---GGATCGCTTGGAGGAGTGG 190
.|||.| ||| |..||.||||.|.||| ||.||..||||.||.||||
BPUM_1235___y 147 CATGGC-CTT--CATCGGTGTTGTAGCAGCTGGCTCTATTGGCGGCGTGG 193
BSNT_02258___ 191 CCGGTCCGCTTACGCTGTATTGGATAGGCCGGTACGGAGGAAGGCCGTTT 240
|.|||||..|.||..||||.|||.||||.||.||.||.||.||.||.|||
BPUM_1235___y 194 CTGGTCCTTTGACTTTGTACTGGTTAGGACGTTATGGCGGCAGACCCTTT 243
BSNT_02258___ 241 CT---TGAACGTTTTGGGAAGTATCTCTTTATTAAACCTGAAGCGCTTGA 287
.| |.|| |.|||.|||||..|.|||.|.|||||.||..|||||||
BPUM_1235___y 244 TTAAATAAA---TATGGAAAGTACTTTTTTGTGAAACCGGAGTCGCTTGA 290
BSNT_02258___ 288 TAAGTCAGATAAATTTTTCAAAAAACATGGTGGCTTTGTCGCGTTCAGCG 337
|||.||.|||...|||||..||||.||||||||.||.|||||.||.||.|
BPUM_1235___y 291 TAAATCGGATGCCTTTTTTGAAAAGCATGGTGGGTTCGTCGCATTTAGTG 340
BSNT_02258___ 338 GCC-GTTTCTTGCCTGGCATCAGGACATTGATTTCCATACCGTGCGGAAT 386
||| ||||.|| ||.||..|.||.||..|.||||||||.||||||||.||
BPUM_1235___y 341 GCCGGTTTATT-CCAGGGGTTAGAACGCTTATTTCCATCCCGTGCGGTAT 389
BSNT_02258___ 387 TGCAAAAATGAATGTTTGGGTGTTTTCGCTTTATACATTCATTGCTATGC 436
|||.|||||||||||.|||||.||||..||.||.||.||..|.||.||..
BPUM_1235___y 390 TGCCAAAATGAATGTGTGGGTATTTTGCCTGTACACGTTTTTAGCGATTA 439
BSNT_02258___ 437 TTCCGATTACATTTGTATATGTTTATCTCGG---TGTGAAGCTCGGTGAA 483
..||.|||||||||||.|||||.|||||.|| ||| |||.||.||.
BPUM_1235___y 440 CACCTATTACATTTGTGTATGTGTATCTTGGATTTGT---GCTTGGGGAG 486
BSNT_02258___ 484 AATTGGAAGGAAGTCGGCTCTATTCTTGATCAATATATGCTTCCGATCGG 533
||.|||||.||.||.|||.|.||..|.||||.||||.|.||.|||||.||
BPUM_1235___y 487 AACTGGAAAGAGGTTGGCGCAATGTTAGATCCATATCTCCTGCCGATTGG 536
BSNT_02258___ 534 GATAGCCATTTTGGCGCTTTTCCTGCTCTACTTACTGATGAAA--AAGAG 581
.||.|..|||.||..|||||||..|.|.||..||..|.||||| .|||.
BPUM_1235___y 537 AATCGGGATTGTGTTGCTTTTCGCGATGTATATATGGTTGAAACGTAGAA 586
BSNT_02258___ 582 GAAGAAACGCACGCACTCCGAAC-----AATTATCTGTATTTTTGAAAAA 626
.||||||.|||...||.|| ||| ||
BPUM_1235___y 587 AAAGAAAAGCAGAAACACC-AACTGCCTAA-------------------- 615
BSNT_02258___ 627 TAAACGTTGA 636
BPUM_1235___y 615 ---------- 615
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