Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02242 and BPUM_1233
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_02242___ykoM.1.24716.seq
# -bsequence dna-align/BPUM_1233___ykoM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02242___ykoM-BPUM_1233___ykoM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02242___ykoM-BPUM_1233___ykoM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02242___ykoM
# 2: BPUM_1233___ykoM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 471
# Identity: 356/471 (75.6%)
# Similarity: 356/471 (75.6%)
# Gaps: 15/471 ( 3.2%)
# Score: 1317.0
#
#
#=======================================
BSNT_02242___ 1 ATGATGAGATTATCGTTTAACGAAGAAGAAGTTGAGCGTGCGATGA-ATT 49
||||||.||||||||||.|||||||||||.||.|||.|.|||| |.|
BPUM_1233___y 1 ---ATGAGACTATCGTTTAATGAAGAAGAAGTAGAACGTTCAATGACACT 47
BSNT_02242___ 50 TGTACAGAGTTTTTGCAAGGGCTTTCAAAAGTGTGTCCGAACATAGTATC 99
| ||||.|||.||||||||.||.||.|||||.||.||.|||||.|||||.
BPUM_1233___y 48 T-TACAAAGTATTTGCAAGAGCATTTAAAAGCGTTTCAGAACACAGTATT 96
BSNT_02242___ 100 CGTGATAGCAAAGAGCACGGTTTTAATCCCACTGAATTTGCTGTACTGGA 149
.|.||.|||||||||||.||.||||||||.|||||||||||.||.||.||
BPUM_1233___y 97 AGAGACAGCAAAGAGCATGGATTTAATCCAACTGAATTTGCGGTTCTTGA 146
BSNT_02242___ 150 GCTCCTGTACACAAGAGGCCCGCAAAAATTACAGCAAATTGGGTCGAGAC 199
..|.|||||.||.|||||..|.||||||.|.||||||||.||.||.||||
BPUM_1233___y 147 ATTGCTGTATACGAGAGGTGCTCAAAAACTTCAGCAAATCGGCTCAAGAC 196
BSNT_02242___ 200 TTCTGCTTGTAAGCGGAAACGTCACATATGTTATTGACAAACTAGAAAGA 249
|.||||||||.|||||.||.||.||.||.||.|||||||||.|||||.||
BPUM_1233___y 197 TACTGCTTGTGAGCGGGAATGTGACGTACGTAATTGACAAATTAGAACGA 246
BSNT_02242___ 250 AACGGGTTTTTAGTAAGGGAGCAGGACCCGAAAGATAAACGCTCTGTTTA 299
||.||.|||.|.|.|||.|||||||||||.||.||||||||.||.|||||
BPUM_1233___y 247 AATGGTTTTATTGAAAGAGAGCAGGACCCAAAGGATAAACGGTCGGTTTA 296
BSNT_02242___ 300 CGCACATTTAACTGACAAGGGAAATGAG----TATTTGGATAAAATTTAT 345
.||.||||||||.||.||.|| |.| |||.|.|||||||||||.
BPUM_1233___y 297 TGCCCATTTAACAGATAAAGG----GCGCAGTTATCTTGATAAAATTTAC 342
BSNT_02242___ 346 CCGATTCATGCACTGCGTATTGCGAGAGCGTTTTCAGGTCTTTCGCCTGA 395
|||||||||.|.||.||.||||||.|.||.|||||.||.||.||||..||
BPUM_1233___y 343 CCGATTCATTCTCTCCGGATTGCGCGTGCTTTTTCTGGCCTCTCGCGAGA 392
BSNT_02242___ 396 TGAACAGGACCAGCTGA-TCGTCCTGCTCAAGAAAGCAGGCATACACAGC 444
.|||||.||.||..||| |.|| ||..|.||.||||||||.||.|||||.
BPUM_1233___y 393 AGAACAAGAACAATTGATTAGT-CTATTGAAAAAAGCAGGTATTCACAGT 441
BSNT_02242___ 445 CAGCATTTGCTGTTTCGTTAA 465
||.|||||..|.|||.|.||.
BPUM_1233___y 442 CAACATTTATTATTTAGATAG 462
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