Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02242 and BPUM_1233

See Amino acid alignment / Visit BSNT_02242 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:42
# Commandline: needle
#    -asequence dna-align/BSNT_02242___ykoM.1.24716.seq
#    -bsequence dna-align/BPUM_1233___ykoM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02242___ykoM-BPUM_1233___ykoM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02242___ykoM-BPUM_1233___ykoM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02242___ykoM
# 2: BPUM_1233___ykoM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 471
# Identity:     356/471 (75.6%)
# Similarity:   356/471 (75.6%)
# Gaps:          15/471 ( 3.2%)
# Score: 1317.0
# 
#
#=======================================

BSNT_02242___      1 ATGATGAGATTATCGTTTAACGAAGAAGAAGTTGAGCGTGCGATGA-ATT     49
                        ||||||.||||||||||.|||||||||||.||.|||.|.|||| |.|
BPUM_1233___y      1 ---ATGAGACTATCGTTTAATGAAGAAGAAGTAGAACGTTCAATGACACT     47

BSNT_02242___     50 TGTACAGAGTTTTTGCAAGGGCTTTCAAAAGTGTGTCCGAACATAGTATC     99
                     | ||||.|||.||||||||.||.||.|||||.||.||.|||||.|||||.
BPUM_1233___y     48 T-TACAAAGTATTTGCAAGAGCATTTAAAAGCGTTTCAGAACACAGTATT     96

BSNT_02242___    100 CGTGATAGCAAAGAGCACGGTTTTAATCCCACTGAATTTGCTGTACTGGA    149
                     .|.||.|||||||||||.||.||||||||.|||||||||||.||.||.||
BPUM_1233___y     97 AGAGACAGCAAAGAGCATGGATTTAATCCAACTGAATTTGCGGTTCTTGA    146

BSNT_02242___    150 GCTCCTGTACACAAGAGGCCCGCAAAAATTACAGCAAATTGGGTCGAGAC    199
                     ..|.|||||.||.|||||..|.||||||.|.||||||||.||.||.||||
BPUM_1233___y    147 ATTGCTGTATACGAGAGGTGCTCAAAAACTTCAGCAAATCGGCTCAAGAC    196

BSNT_02242___    200 TTCTGCTTGTAAGCGGAAACGTCACATATGTTATTGACAAACTAGAAAGA    249
                     |.||||||||.|||||.||.||.||.||.||.|||||||||.|||||.||
BPUM_1233___y    197 TACTGCTTGTGAGCGGGAATGTGACGTACGTAATTGACAAATTAGAACGA    246

BSNT_02242___    250 AACGGGTTTTTAGTAAGGGAGCAGGACCCGAAAGATAAACGCTCTGTTTA    299
                     ||.||.|||.|.|.|||.|||||||||||.||.||||||||.||.|||||
BPUM_1233___y    247 AATGGTTTTATTGAAAGAGAGCAGGACCCAAAGGATAAACGGTCGGTTTA    296

BSNT_02242___    300 CGCACATTTAACTGACAAGGGAAATGAG----TATTTGGATAAAATTTAT    345
                     .||.||||||||.||.||.||    |.|    |||.|.|||||||||||.
BPUM_1233___y    297 TGCCCATTTAACAGATAAAGG----GCGCAGTTATCTTGATAAAATTTAC    342

BSNT_02242___    346 CCGATTCATGCACTGCGTATTGCGAGAGCGTTTTCAGGTCTTTCGCCTGA    395
                     |||||||||.|.||.||.||||||.|.||.|||||.||.||.||||..||
BPUM_1233___y    343 CCGATTCATTCTCTCCGGATTGCGCGTGCTTTTTCTGGCCTCTCGCGAGA    392

BSNT_02242___    396 TGAACAGGACCAGCTGA-TCGTCCTGCTCAAGAAAGCAGGCATACACAGC    444
                     .|||||.||.||..||| |.|| ||..|.||.||||||||.||.|||||.
BPUM_1233___y    393 AGAACAAGAACAATTGATTAGT-CTATTGAAAAAAGCAGGTATTCACAGT    441

BSNT_02242___    445 CAGCATTTGCTGTTTCGTTAA    465
                     ||.|||||..|.|||.|.||.
BPUM_1233___y    442 CAACATTTATTATTTAGATAG    462


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