Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02218 and BPUM_1215
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_02218___metE.1.24716.seq
# -bsequence dna-align/BPUM_1215___metE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02218___metE-BPUM_1215___metE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02218___metE-BPUM_1215___metE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02218___metE
# 2: BPUM_1215___metE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2395
# Identity: 1681/2395 (70.2%)
# Similarity: 1681/2395 (70.2%)
# Gaps: 212/2395 ( 8.9%)
# Score: 5721.0
#
#
#=======================================
BSNT_02218___ 1 ATGACAACCATCAAAACATCGAATTTAGGATTTCCGAGAATCGGACTGAA 50
.||||||...|.||||||...|||.||||.||||||.||||.||..|.||
BPUM_1215___m 1 TTGACAATTGTTAAAACAAGTAATCTAGGTTTTCCGCGAATTGGTTTAAA 50
BSNT_02218___ 51 CCGGGAATGGAAAAAAGCACTTGAAGCGTATTGGAAAGG-CAGTACTGAT 99
|.|.||||||||||||||||||||..|.||||||||||| || .||.||.
BPUM_1215___m 51 CAGAGAATGGAAAAAAGCACTTGAGTCTTATTGGAAAGGTCA-AACGGAC 99
BSNT_02218___ 100 AAAGATACGTTTTTGAAGCA-AATCGACGAACTATTTTTATCCGCAGTAA 148
...||.||..|.|| ||||| |.|.||.||||.|||||||.|.||..|.|
BPUM_1215___m 100 CGTGAAACCCTCTT-AAGCACACTTGATGAACAATTTTTAACTGCCATTA 148
BSNT_02218___ 149 AAACACAAATTGACCAGCAGATTGATGTTGTGCCTGTTTCT---GATTTC 195
|||||||||||||.||.||.|||||||||||.|| |||| ||.||.
BPUM_1215___m 149 AAACACAAATTGATCAACAAATTGATGTTGTTCC---TTCTGGAGACTTT 195
BSNT_02218___ 196 ACACAGTATGACCATGTACTCGACACAGCAGTCAGCTTCAACTGGATCCC 245
||....||.||.||.||.|||||.||.||.||.|..|||||.|||||.||
BPUM_1215___m 196 ACCTTCTACGATCACGTGCTCGATACTGCTGTTATGTTCAATTGGATTCC 245
BSNT_02218___ 246 GAAACGTTTCAGACA-TTTGACTGA--CGCTACCGATACATACTTCGCTA 292
..|.||.|||.| || .||.|..|| ||||| |||||||||||.||.|
BPUM_1215___m 246 AGAGCGCTTCCG-CAGCTTAAAGGACCCGCTA--GATACATACTTTGCGA 292
BSNT_02218___ 293 TCGCCCGCGGAATCAAAGACGCCGTATCTAGTGAAATGACAAAATGGTTT 342
|.||..|.||||..|||||.||.||.||.|||||||||||||||||||||
BPUM_1215___m 293 TAGCAAGAGGAACAAAAGATGCTGTCTCAAGTGAAATGACAAAATGGTTT 342
BSNT_02218___ 343 AATACAAATTACCATTACATCGTTCCGGAATATGACGAGAGCATTGAGTT 392
||||||||.||.||.|||||||||||.|||||.||..|.||||..||.||
BPUM_1215___m 343 AATACAAACTATCACTACATCGTTCCAGAATACGAAAAAAGCACCGAATT 392
BSNT_02218___ 393 CCGTCTGACAAGAAACAAACAACTCGAAGATTATCGCCG----GATCAAA 438
|...||.|||...|||||||..||.||||.||| || |.|.|||
BPUM_1215___m 393 CAAACTCACACATAACAAACCGCTTGAAGCTTA----CGAAAAGGTGAAA 438
BSNT_02218___ 439 CAGGAATACGGTGTGGAAACAAAGCCTGTGATTGTCGGCCCTTATACGTT 488
.|||..|..|||||.||||||||.|||||..|..|.||.|.||||||.||
BPUM_1215___m 439 AAGGCGTTTGGTGTTGAAACAAAACCTGTTGTACTTGGTCTTTATACATT 488
BSNT_02218___ 489 CGTTACGCTTGCTAAAGGCTATGAACCATCTGAAGCAAAAGCGATCCAAA 538
.||..|.|||.|||||||||||||||||..|||||.|||||.|||.||..
BPUM_1215___m 489 TGTATCACTTTCTAAAGGCTATGAACCAAATGAAGTAAAAGAGATTCAGC 538
BSNT_02218___ 539 AACGCCTTGTGCCATTATATGTACAGCTTTTGAAAGAGCTTGAAGAAGAA 588
|.|||||..|.||..|.|||..|||||||||.|||||.||||||||||..
BPUM_1215___m 539 AGCGCCTCATCCCTCTTTATACACAGCTTTTAAAAGAACTTGAAGAAGCC 588
BSNT_02218___ 589 GGCGTAAAATGGGTTCAAATCGATGAGCCGGCGCTCGTTACCGCCTC-TA 637
|||||.||||||||.|||||.||||||||.||.||.||.||.||.|| ||
BPUM_1215___m 589 GGCGTCAAATGGGTACAAATTGATGAGCCAGCACTTGTCACAGCTTCATA 638
BSNT_02218___ 638 GTGAAGATGTCCGCGGCGCAAAAGAATTATTTGAAAGCATTACAAGTG-A 686
||||||.||....|.||..||||||.|.|.|.|||..||.||| | |
BPUM_1215___m 639 -TGAAGACGTGAAAGCCGTCAAAGAAATCTATCAAACGATCACA---GAA 684
BSNT_02218___ 687 GC--TTTCATCCTTGAATGTGCTTTTGCAGACGTATTTTGATTCTGTTGA 734
|| |..|..||||.|||.|.|||.|.||.||.||.||||||||.||.||
BPUM_1215___m 685 GCCGTACCTGCCTTAAATATTCTTCTTCAAACATACTTTGATTCAGTAGA 734
BSNT_02218___ 735 TGCTTATGAAGAGCTGATCTCTTACCCGGTTCAGGGAATTGGCCTTGATT 784
|||.|||||||||||..||.|.|||||.|||.|.|..||.||.|||||||
BPUM_1215___m 735 TGCGTATGAAGAGCTTGTCACATACCCTGTTGAAGCTATCGGTCTTGATT 784
BSNT_02218___ 785 TCGTTCACGACAAAGGCAGAAACCTGGAACAGCTTAAAACACATGGCTTT 834
|.||.||.||..||||..|.||.||.||.||..|.||||.|||.||.||.
BPUM_1215___m 785 TTGTCCATGATCAAGGACGCAATCTTGATCAAGTGAAAAAACACGGATTC 834
BSNT_02218___ 835 CCGACAGACAAAGTGCTGGCAGTTGGCGTTATCGACGGACGCAACATTTG 884
||||.|||||||.|..|.||||..|||||.||.||.|||.|.||.|||||
BPUM_1215___m 835 CCGAAAGACAAAATTTTAGCAGCAGGCGTCATTGATGGAAGAAATATTTG 884
BSNT_02218___ 885 GAAAGCGGACCTTG----AAGAGCGTCTCGATGCCGTTCTTGATATTCTC 930
||...|.||.|||| |||| .||.|||||.| ||||.
BPUM_1215___m 885 GAGGTCAGATCTTGGCGAAAGA--------TTGACGTTCGT----TTCTG 922
BSNT_02218___ 931 AG--CATT-----------GCAAAAGTTGATGAACTGTGGATTCAGCCTT 967
|| |||| ||..||| |||.|.|||.|.|||||||
BPUM_1215___m 923 AGGTCATTGCCGGCGCTCAGCCGAAG-----GAAGTATGGTTACAGCCTT 967
BSNT_02218___ 968 CCAGCAGCCTGTTGCATGTTCCGGTAGCGAAACACCC---TGATGAGCAT 1014
|.||||||.|..|.|||||.||.||.||.|||||||| .||..|||
BPUM_1215___m 968 CAAGCAGCTTACTTCATGTACCCGTTGCAAAACACCCAAGCGAACAGC-- 1015
BSNT_02218___ 1015 TTG--GAAAAAGACCTATTGAACGGATTATCCTACGCAAAAGAGAAGCTG 1062
||| |||||| |||||.||||||.|.||.||.||.|..||.||||||
BPUM_1215___m 1016 TTGAAGAAAAA---CTATTAAACGGACTGTCTTATGCCACTGAAAAGCTG 1062
BSNT_02218___ 1063 GCCGAGCTGACAGCTTTGAAAGAAGGTTTAGTATCAGGAAAAGCGGCGAT 1112
||.||..|.|||.|.||.||||||||.||| |..|||.|||.||
BPUM_1215___m 1063 GCTGAATTAACAACATTAAAAGAAGGGTTA-----ACAAAAGGCGCCG-- 1105
BSNT_02218___ 1113 CAGCGAAGAGATT-CAGCAGGC-----TAAGGCTGATATCCAGGCGCTT- 1155
|||| |||| .|||.|.| |.|.||.|| .||.||.|||
BPUM_1215___m 1106 CAGC-----GATTGAAGCCGCCATCAATGAAGCCGA---GCAAGCACTTC 1147
BSNT_02218___ 1156 --------AAACAGTTTGCAACAGGCGCCAATTCTGA----ACAAAAGAA 1193
|||.|.|||||||.|||..|||||.|.|| |||...|||
BPUM_1215___m 1148 TTACTTTAAAAGAATTTGCAAAAGGAACCAATGCGGATTTCACAGCGGAA 1197
BSNT_02218___ 1194 AGAGCTTGAGCAATTAAC---TGAT--AAAGACTTCAAGCGTCCGATTCC 1238
.|||| .||| |.|| ||||||||.||||||||..||.|
BPUM_1215___m 1198 --------CGCAA-CAACCTTTCATCGAAAGACTTTAAGCGTCCTGTTGC 1238
BSNT_02218___ 1239 GTTTGAAGAACG--TT--TAGCCCTGCAAAATGAATCTCTCGGCCTTCCG 1284
.||||||||||| || || |.|||||.||||||||.|..||.|||
BPUM_1215___m 1239 CTTTGAAGAACGCCTTCGTA----TCCAAAACGAATCTCTTGAACTGCCG 1284
BSNT_02218___ 1285 CTTTTGCCGACGACAACGATCGGCAGCTTCCCGCAGTCTGCTGAAGTGCG 1334
||.||.||.||.|||||.||.|||||||||||||||||||||||||||||
BPUM_1215___m 1285 CTCTTACCAACAACAACCATTGGCAGCTTCCCGCAGTCTGCTGAAGTGCG 1334
BSNT_02218___ 1335 GAGCGCACGCCAAAAATGGCGGAAAGCTGAGTGGTCCGATGAACAGTATC 1384
.|||||.||.|||||||||||.|||..|||.|||.|..|||.|.|.|||.
BPUM_1215___m 1335 CAGCGCTCGACAAAAATGGCGTAAAAATGAATGGACAAATGCAGAATATG 1384
BSNT_02218___ 1385 AAAACTTTATCAATGCGGAAACAAAAAGATGGATTGATATTCAGGAAGAA 1434
|..|.|||||.||....|||||||||||||||||||||||||||||.|||
BPUM_1215___m 1385 ATGAATTTATTAAGAAAGAAACAAAAAGATGGATTGATATTCAGGAGGAA 1434
BSNT_02218___ 1435 TTGGAGCTTGATGTCCTTGTTCACGGCGAATTTGAACGGACAGACATGGT 1484
.|.|..||.|||||.||.||.||.||.|||||||||||.|||||||||||
BPUM_1215___m 1435 ATCGGTCTGGATGTTCTCGTACATGGAGAATTTGAACGTACAGACATGGT 1484
BSNT_02218___ 1485 CGAATACTTCGGTGAAAAGCTGGCCGGTTTCGCCTTCACTAAATATGCCT 1534
.||||||||.|||||||||||.|||||.||.|||||.||.||||.|||.|
BPUM_1215___m 1485 TGAATACTTTGGTGAAAAGCTAGCCGGATTTGCCTTTACGAAATTTGCTT 1534
BSNT_02218___ 1535 GGGTTCAATCATACGGCTCACGCTGTGTCCGCCCGCCAGTCATTTACGGA 1584
||||.|||||.|||||.||||||||.||....||||||.|.|||||.|||
BPUM_1215___m 1535 GGGTACAATCCTACGGATCACGCTGCGTGAAGCCGCCAATTATTTATGGA 1584
BSNT_02218___ 1585 GATGTTGAATTTATTGAACCGATGACAGTGAAAGACACAGTCTACGCACA 1634
|||||.|||||||..|.|||.|||||.||||||||.||.||.||||||||
BPUM_1215___m 1585 GATGTCGAATTTACAGCACCAATGACCGTGAAAGAGACGGTATACGCACA 1634
BSNT_02218___ 1635 GTCATTGACTTCCAAGC-------------ATGTGAAAGGAATGCTGACG 1671
|||| |.||.||||||||||||||.
BPUM_1215___m 1635 -------------AAGCTTAACGGAGAAAAAGGTCAAAGGAATGCTGACA 1671
BSNT_02218___ 1672 GGCCCGGTTACAATCTTAAACTGGTCTTTCCCTCGAAACGACATCTCGAG 1721
||.||.||.||.||||||||||||||||||||..|||..||.|||||..|
BPUM_1215___m 1672 GGTCCTGTCACCATCTTAAACTGGTCTTTCCCAAGAACAGATATCTCACG 1721
BSNT_02218___ 1722 GAAAGAAATCGCCTTCCAAATCGGGCTT--GCCCTTCGCAAAGAAGTTAA 1769
.|||||.||.|||||||||||| |||| ||..|.||.|||||.||..|
BPUM_1215___m 1722 AAAAGACATTGCCTTCCAAATC--GCTTTCGCATTACGTAAAGAGGTAGA 1769
BSNT_02218___ 1770 AGCGCTTGAAGACGCAGGCATTCAAATCATTCAAGTCGATGAACCAGCGC 1819
||||.|.|||||.|||||.||||||.||||||||||.||||||||.||.|
BPUM_1215___m 1770 AGCGTTAGAAGAAGCAGGGATTCAAGTCATTCAAGTGGATGAACCTGCAC 1819
BSNT_02218___ 1820 TGCGTGAAGGCCTTC----CATTGAAAACCCGCGATTGGGATGAGTATTT 1865
|..|.|||||.|||| ||..|||| |.|||||||..||.|||||
BPUM_1215___m 1820 TTAGAGAAGGTCTTCCGCTCAAGGAAA----GTGATTGGGCAGACTATTT 1865
BSNT_02218___ 1866 GACTTGGGCGGCAGAAGCTTTCAGATTAACCACTTCTTCCGTGAAAAACG 1915
.|..|||||.|||||..|.|||.||.||.|.||.||.||.||..||||.|
BPUM_1215___m 1866 AAACTGGGCAGCAGAGTCATTCCGACTATCAACATCATCTGTTCAAAATG 1915
BSNT_02218___ 1916 AGACACAAATTCATACACATATGTGCTACAGCAACTTCGAAGATATCGTT 1965
|.||.||||||||||||||||||||||||||.||||||||.|||||.||.
BPUM_1215___m 1916 AAACGCAAATTCATACACATATGTGCTACAGTAACTTCGAGGATATTGTA 1965
BSNT_02218___ 1966 GATACAATCAATGATCTTGATGCCGATGTGATTACAATCGAACATAGCA- 2014
||.||.|||.|.||.|||||||||||.|||||.|||||.|||||| .||
BPUM_1215___m 1966 GACACGATCGAAGACCTTGATGCCGACGTGATCACAATTGAACAT-TCAC 2014
BSNT_02218___ 2015 GAAGCCACGGAGGATTTTTAGATTACTTAAAAAACCACCCGTATTTGAAA 2064
||||.||.||.|||||..|.|||||.|||.|.||.||.|||||||||||.
BPUM_1215___m 2015 GAAGTCATGGCGGATTCCTCGATTATTTAGAGAAACATCCGTATTTGAAG 2064
BSNT_02218___ 2065 GGGCTTGGCCTTGGTGTATATGACATTCACAGCCCTCGTGTGCC----GT 2110
||.||.||.|||||||||||||||||.||.|||||.||.||.|| ||
BPUM_1215___m 2065 GGTCTGGGACTTGGTGTATATGACATCCATAGCCCGCGCGTTCCATCTGT 2114
BSNT_02218___ 2111 CAACTGAAGAAATGTA--CAATATTATCGTTGATGCGCTTG-CCGTCTGT 2157
| ||||||||| | ||| ||.||.|.|||||| .||| .|||.||.
BPUM_1215___m 2115 C----GAAGAAATG-AGTCAA-ATCATAGATGATGC-ATTGAACGTATGC 2157
BSNT_02218___ 2158 CCGACTGACCGCTTCTGGGTAAATCCGGACTGCGGATTGAAAACAAGACA 2207
|||||.||.|||||||||||.||.||.|||||.|||.|.|||||||||||
BPUM_1215___m 2158 CCGACAGATCGCTTCTGGGTGAACCCTGACTGTGGACTAAAAACAAGACA 2207
BSNT_02218___ 2208 GCAGGAAGAAACGGTTGCAGCATTGAAAAACATGGT---------TGAAG 2248
..||...|||||..||||.||.|||||||||||||| |||||
BPUM_1215___m 2208 AGAGCCTGAAACCATTGCTGCTTTGAAAAACATGGTAACGGCAGCTGAAG 2257
BSNT_02218___ 2249 CCGC----AAAACAGGCAAGAGCAAAGCAGACACAGCTAGTATAA 2289
.||| || |||||.|.|.||||..|.||||
BPUM_1215___m 2258 TCGCTCGTAA-------------AAAGCTGGCGCAGCATGCATAA 2289
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