Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02204 and BPUM_1205
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_02204___purU.1.24716.seq
# -bsequence dna-align/BPUM_1205___purU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02204___purU-BPUM_1205___purU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02204___purU-BPUM_1205___purU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02204___purU
# 2: BPUM_1205___purU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity: 659/958 (68.8%)
# Similarity: 659/958 (68.8%)
# Gaps: 110/958 (11.5%)
# Score: 2237.5
#
#
#=======================================
BSNT_02204___ 1 ATGAAATCATATATGACTCAGCG---GTTGGACGAA-TACCGTGACGGAA 46
||||.|.|.|..||.| |||.| .|| ||| |||...|||..||
BPUM_1205___p 1 ATGAGAACTTTGATAA--CAGAGAAACTT----GAATTACACAGACAAAA 44
BSNT_02204___ 47 --ATGAGGATAAAGGGCGGCT-CTTGGTCAGCTGCCCCGATCAGCCGGGT 93
|||||.|.|||||..|..| ||| |||||||||||.||||||||.||.
BPUM_1205___p 45 GCATGAGCAAAAAGGAAGATTGCTT-GTCAGCTGCCCGGATCAGCCTGGA 93
BSNT_02204___ 94 ATCGTCTCTGCAGTTTCTGCGTTTTTATTTGAACACGATGCCAATATTAT 143
||.||.||.||.||||||.|.|||||||||||.||.|..||.|||||.||
BPUM_1205___p 94 ATTGTATCCGCTGTTTCTTCTTTTTTATTTGAGCATGGAGCAAATATCAT 143
BSNT_02204___ 144 AGAATCAAATCAATATACGACAGACCCTGAAGGCGGCCGGTTCTTCCTGA 193
.|||||.|..|||||.||.|||||.|.||||.|||||.|||||||..|.|
BPUM_1205___p 144 TGAATCCAGCCAATACACAACAGATCATGAAAGCGGCAGGTTCTTTTTAA 193
BSNT_02204___ 194 GAATCGAATTCGACTGCGCGGGCATTCGTGAGAAAAAAGCATCTC----- 238
||||.|||||.||.|| ||||.| ||||||
BPUM_1205___p 194 GAATTGAATTTGATTG---------------GAAAGA--CATCTCAGCAA 226
BSNT_02204___ 239 ------TTCAG-----GCGGC-GTTTGCCTCTGTAGCGGAAAA------- 269
.|||| ||.|| ||||| ||| .||
BPUM_1205___p 227 ATATGGATCAGCTGAAGCAGCAGTTTG-------AGC---CAATTGCATC 266
BSNT_02204___ 270 ---ATTCGACATGACATGGAGCTTAACTTTGGCAAGTGAATT---GAAGC 313
|||..|.|||||.||||||.|..|....||||||||..| .||||
BPUM_1205___p 267 TTCATTTCAAATGACGTGGAGCATGTCGCGTGCAAGTGAGCTTAAAAAGC 316
BSNT_02204___ 314 GTGTCGCCATTTTTGTTTCAAAGGAGCTTCATTGCCTGCATGAGCTGATT 363
|.||.||.|||||.|||||.|||||||||||..||||||||||..|.
BPUM_1205___p 317 ---TGGCGATCTTTGTGTCAAAAGAGCTTCATTGTTTGCATGAGCTCCTA 363
BSNT_02204___ 364 TGGGAATGGCAAACCGGCAACCTGATGGCGGAGATCGCTGTTGTCATCAG 413
|||||||||||||.||||||..|||||||.||.||.||.||.||.||.||
BPUM_1205___p 364 TGGGAATGGCAAAGCGGCAATTTGATGGCTGAAATTGCGGTCGTGATTAG 413
BSNT_02204___ 414 TAACCATGAGGAA--GCGAGAGAGCTGGTTG-AGCGCCTGAACATTCCAT 460
.||.||||| || ||.|.|||....||.| |||||.|| ..||.||.|
BPUM_1205___p 414 CAATCATGA--AACGGCAAAAGACACAGTAGAAGCGCTTG-GGATCCCGT 460
BSNT_02204___ 461 TCCACTATATGAAAGCGAACAAAGACAT---CAGAGCGGAAGTCGAAAAG 507
||||.|.|.||||.|||||||||||||| ||.| ||||..|||||.
BPUM_1205___p 461 TCCATTTTGTGAAGGCGAACAAAGACATTCGCAAA---GAAGCAGAAAAA 507
BSNT_02204___ 508 AAGCAGCTTGAACTGCTGGAGCAGTACGATGTTGATGTCATCGTGCTTGC 557
.|||||||.|.|.|..|.||..||||.|||.||||||.|||.||||||||
BPUM_1205___p 508 GAGCAGCTCGCATTATTAGAAGAGTATGATATTGATGCCATTGTGCTTGC 557
BSNT_02204___ 558 ACGCTATATGCAGATTCTAACTCCTGATTTTGTTTCGGCT---------- 597
..|.||.|||||.|||.||||.||| ||||
BPUM_1205___p 558 TAGATACATGCAAATTTTAACGCCT-----------GGCTTTATAGAACA 596
BSNT_02204___ 598 -CATCCGAATCGCATCATCAATATCCACCATTCATTTCTGCCTGCTTTTA 646
||||||||....|||||.|||||.||.|||||.||.|||||.||.||||
BPUM_1205___p 597 GCATCCGAACAAAATCATTAATATTCATCATTCCTTCCTGCCAGCGTTTA 646
BSNT_02204___ 647 TCGGTGCGAATCCGTACAAACGGGCTTACGAGCGCGGCGTGAAACTGATC 696
|||||||.|||||.||.||.||.||.||.|||||.||.||.|||.||||.
BPUM_1205___p 647 TCGGTGCAAATCCATATAAGCGAGCATATGAGCGAGGAGTCAAATTGATA 696
BSNT_02204___ 697 GGTGCGACATCTCACTATGTGACAAACGATCTTGATGAAGGACCGATCAT 746
||.|||||.|||||.||||||||.||.|||.|.|||||||||||||||||
BPUM_1205___p 697 GGCGCGACTTCTCATTATGTGACCAATGATTTAGATGAAGGACCGATCAT 746
BSNT_02204___ 747 TGAACAGGATATTGAGCGTGTGGACCACCGCGATAATGCGGAAGCGCTGA 796
||||||||||||||||||.||.||.|||||.|||.||||||||||..|.|
BPUM_1205___p 747 TGAACAGGATATTGAGCGAGTAGATCACCGGGATGATGCGGAAGCTTTAA 796
BSNT_02204___ 797 AAAACATCGGAAGAACAATTGAGCGCAGCGTGCTTGCCCGTGCTGTGAAA 846
||||.|||||..|||||||||||||.||.||||||||.|||||.||.|||
BPUM_1205___p 797 AAAATATCGGTCGAACAATTGAGCGGAGTGTGCTTGCTCGTGCCGTCAAA 846
BSNT_02204___ 847 TGGCATTTGGAAGACCGTGTCATCGTTCATGAAAATAAAACAATCGTCTT 896
||||||.|.|||||.||..|.||.||.|||||.||||||||.||.||.||
BPUM_1205___p 847 TGGCATCTAGAAGATCGAATTATTGTACATGAGAATAAAACGATTGTATT 896
BSNT_02204___ 897 TAACTAG- 903
||| |.|
BPUM_1205___p 897 TAA-TTGA 903
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