Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02200 and BPUM_1199
See
Amino acid alignment /
Visit
BSNT_02200 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_02200___ykkB.1.24716.seq
# -bsequence dna-align/BPUM_1199.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02200___ykkB-BPUM_1199.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02200___ykkB-BPUM_1199.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02200___ykkB
# 2: BPUM_1199
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 600
# Identity: 331/600 (55.2%)
# Similarity: 331/600 (55.2%)
# Gaps: 135/600 (22.5%)
# Score: 778.0
#
#
#=======================================
BSNT_02200___ 1 ATG--------AACGC----------TAAAACGAAGC--------TTGTG 24
||| |||.| ||||||..||| .||.|
BPUM_1199 1 ATGCAACATCAAACACGGACGGTGCTTAAAACAGAGCGGCTCAGGCTGAG 50
BSNT_02200___ 25 ACCGATCGAATTCGTTTGCGCTGTATGGAAGATCGGGATCAAGCCAC--- 71
|.|||| |||| |||.|| ||| |||.|
BPUM_1199 51 AACGAT-GAAT----------------GAACAT---GAT---GCCCCATT 77
BSNT_02200___ 72 TTTGTTTGGGCTGCTTTTTAATGATCCTGACGTCATGACATATTATTCCG 121
|||.|.|....||.|.|||.|.|||...||.||.||||.|||||||.|..
BPUM_1199 78 TTTATATCACATGTTGTTTCAAGATGAAGAAGTGATGAAATATTATCCTT 127
BSNT_02200___ 122 GTTTAAAAGATAAGAGGCAAACCCGCGAGTGGGT--CAATTGGAACCAAC 169
.|||.||.|||.||..||||||....||||||.| || |||||.|||.
BPUM_1199 128 CTTTGAAGGATGAGCAGCAAACGAAAGAGTGGATTGCA--TGGAATCAAA 175
BSNT_02200___ 170 GAAATGAAAAAGGGTACGGCGT---------TAGTCTGTGGATCGCCGAA 210
..|||| ||.|||| |..|||.||||||...|||
BPUM_1199 176 AGAATG---------ACCGCGTGTATCATACTTCTCTCTGGATCATTGAA 216
BSNT_02200___ 211 G----ATAAGCGGA-----CAGGGGAGTTTTTGGGGCAATGCGGCACTGT 251
| |.||.||.| || ||.||.|||.||||.|.|||
BPUM_1199 217 GACAAAGAAACGAATGAACCA---------TTTGGACAAAGCGGGATTGT 257
BSNT_02200___ 252 TCCCCAGCAGATCGAAAATCAAACCGTAATGGAAATTGGCTATATGTTT- 300
|...||..|.||||||...|||||||.|.|.|||||.|||||||||.||
BPUM_1199 258 TTTGCAAAACATCGAAGGACAAACCGAACTTGAAATCGGCTATATGCTTA 307
BSNT_02200___ 301 -GCCCGCCGCCACTGGGGGAACGGCTATGC-GCAAGAAGCGGCTCGGGCC 348
|...||.|| .||||||||.|||||||| || .|||||.||...||.|
BPUM_1199 308 AGAAAGCAGC--GTGGGGGAATGGCTATGCTGC-TGAAGCCGCAAAGGGC 354
BSNT_02200___ 349 TGTCTGGACTATGGCTTTAACGAGCGGCAGTTCGGCAAAATGGCG-GCTT 397
|||||...|||.||||||.|.||...|.||.||.|...|||||.| || |
BPUM_1199 355 TGTCTCACCTACGGCTTTGAAGAAATGAAGGTCAGACGAATGGTGAGC-T 403
BSNT_02200___ 398 TGATTGATCCGGGTAACAAAGCGTCCATACGGGTAGCGGAGAAAATCGGT 447
|.|||...||||.|||..|.||.||..||..|||.||....|||||.||.
BPUM_1199 404 TAATTCGCCCGGATAATGAGGCATCGGTAAAGGTCGCTTTAAAAATGGGC 453
BSNT_02200___ 448 ATGCATCACAGCGAAACGACCA---GAAAAT-GGAATAAACCGATCGCGG 493
||| .|.|..||||..|||| .||||| |||..|||.| ||.|..|
BPUM_1199 454 ATG---AAAAAAGAAAAAACCATTTCAAAATGGGACCAAATC-ATTGATG 499
BSNT_02200___ 494 TA-----TATGA---------AAGAAAA------TCTTACAATTGA---- 519
|| |||.| ||||||| .||||||| |
BPUM_1199 500 TATACAGTATCAATCGCAACGAAGAAAACGGCTCGCTTACAA---AATAA 546
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.