Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02193 and BPUM_1193
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_02193.1.24716.seq
# -bsequence dna-align/BPUM_1193.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02193-BPUM_1193.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02193-BPUM_1193.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02193
# 2: BPUM_1193
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity: 300/953 (31.5%)
# Similarity: 300/953 (31.5%)
# Gaps: 550/953 (57.7%)
# Score: 673.5
#
#
#=======================================
BSNT_02193 0 -------------------------------------------------- 0
BPUM_1193 1 ATGGATTCTATAAGAGCAGAACAAATACACAAAATGCCGCAATGTATGAG 50
BSNT_02193 0 -------------------------------------------------- 0
BPUM_1193 51 TGAATATGACAATTTACAAGAAGTCCTTTTATGCAGCCCCATCTATATGG 100
BSNT_02193 0 -------------------------------------------------- 0
BPUM_1193 101 AAATCAAACAGATCATCAACGAAACCCAAAAACATTTTGCAAGAGAAAAT 150
BSNT_02193 0 -------------------------------------------------- 0
BPUM_1193 151 ATTTCTCAAATGAAAGCCATTGCTCAGCATAAGCAATTGATCCAAATCCT 200
BSNT_02193 0 -------------------------------------------------- 0
BPUM_1193 201 AAAAAACCATCAAGTACGTCCCATTATGCTTCCTGCAAATGACCGCTATC 250
BSNT_02193 0 -------------------------------------------------- 0
BPUM_1193 251 CTGAGCAAGTCTTTACTCGGGATATTGGGTTTACGATTGGACATACACTC 300
BSNT_02193 0 -------------------------------------------------- 0
BPUM_1193 301 TTTGTTTCAAGCATGGCTGCTCCGGTTCGGCAAGGAGAAGAACAATTATT 350
BSNT_02193 1 --------------------AT-GCTT----------------------- 6
|| ||||
BPUM_1193 351 AAAAGAGTGGGCACAGGAAAATGGCTTCAAAACTGTTAGCCTGACAAACG 400
BSNT_02193 7 GATACGAGTATTGAAGGCGGAGACGTCATTATCGATGATGACA-TTGTCT 55
|| ||| |||||||||||.||.||..||.|.||..| .||| .|||.|
BPUM_1193 401 GA-ACG---ATTGAAGGCGGCGATGTACTTGTAGACCA-AACACGTGTAT 445
BSNT_02193 56 ATGTCGGAATCAG-------------CCAGCGCACCGTCATTTCAGCTAT 92
.|||||||||.|| |||| |.|||||
BPUM_1193 446 TTGTCGGAATGAGCAAAAGAACAAACCCAG-------------CCGCTAT 482
BSNT_02193 93 CGGCCAGCTGGAAGAGGCACTTCCTGAGTAT-ACGATCGTTCCAGTGAAG 141
|....||||..||.|.|.|||.||.||..|| || ||..||||..|..|.
BPUM_1193 483 CCATGAGCTCAAAAAAGAACTGCCGGATCATGAC-ATTATTCCCATTCAT 531
BSNT_02193 142 CTGCATGAAAAATTTTTGCATTTGGACTGCGTATTTAACATTGTATCTGA 191
||.|.|....|..|||||||..|.||.||.||..|.||.|||.|.|||.|
BPUM_1193 532 CTTCCTCCTCACATTTTGCACCTCGATTGTGTGATGAATATTCTCTCTCA 581
BSNT_02193 192 --AAGCGAAGCGTTAATTTATCCACAGGCCATT-------GAGCCAGATG 232
|.|.|| .|||.||||||||..|.| |.|| |||
BPUM_1193 582 TGATGAGA--TGTTGATTTATCCTGAAG-CGTTCAAAAAAGAG------- 621
BSNT_02193 233 CAGCCGAT------ATGCTGGCAAAA--CGTTATGATCTTATTG----AG 270
||| .|||| |||.| |.||||.||||.|||| |.
BPUM_1193 622 -----GATCTTCACTTGCT--CAACATGCATTATCATCTCATTGAAATAA 664
BSNT_02193 271 GTGCCCGAGGACGAACAATTTACGCTTGGCACC-AACGTCCTTTCAATC- 318
|| ||..|.||.|||||.||.||.|| ||| ||||| ||| |||
BPUM_1193 665 GT----GAACAAGAGCAATTCACACTCGG-ACCTAACGT--TTT--ATCT 705
BSNT_02193 319 ----GAAAAAAAAACGATCATCAGTCTCCCTGGCAACCGCCATGTCAATC 364
||.|.|||||.| |.||||||.|.| ||| ||||||
BPUM_1193 706 ATTGGACAGAAAAAAG-TGATCAGTTTGC----------CCA--TCAATC 742
BSNT_02193 365 AACAGCTATCGAAA-AGAGGCT----------ATCAC---------ATTA 394
|| |||| |.|.||| .|||| .|.|
BPUM_1193 743 AA--------GAAACAAATGCTGCATTAACCGCTCACGGGTATACTGTCA 784
BSNT_02193 395 TCGAAATTGACCTGTCAGAAATTATTAAATCAGGCGGCTCCTTCAGGTGC 444
|.|||.|.||..|.||||||||.||||||||.||.||.||.||.||.|||
BPUM_1193 785 TTGAAGTGGATTTTTCAGAAATCATTAAATCTGGTGGGTCTTTTAGATGC 834
BSNT_02193 445 TGCACAATGCCGCTGATTCGAGGCG-------AATGA------------- 474
||||||.|.|| ||||| |||| |.|.|
BPUM_1193 835 TGCACATTACC---GATTC--GGCGTTCATCCACTAAAAAAGCCAGCGTG 879
BSNT_02193 474 --- 474
BPUM_1193 880 TAG 882
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