Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02190 and BPUM_1192
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_02190___ykfD.1.24716.seq
# -bsequence dna-align/BPUM_1192.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02190___ykfD-BPUM_1192.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02190___ykfD-BPUM_1192.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02190___ykfD
# 2: BPUM_1192
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity: 684/1039 (65.8%)
# Similarity: 684/1039 (65.8%)
# Gaps: 119/1039 (11.5%)
# Score: 2112.5
#
#
#=======================================
BSNT_02190___ 1 ATGAC------GCCACTGCCTTTGTTAGAGGTCAGCCAGCTAAAAATGCA 44
|||.| .|||| |.|||.|.||.|.|.|.||.||||..||
BPUM_1192 1 ATGGCAGTTGAACCAC------TTTTACAAGTAAACAATCTCAAAAAACA 44
BSNT_02190___ 45 TTTTGA-----CGCAGGGAAAAAGCGGACAGTCAAAGCCGTCGACGGGGT 89
.|||.| ||.|.|||| |.||..|.|||||..|.|||||.||
BPUM_1192 45 CTTTCATCTATCGAAAGGAA-----GAACGTTAAAAGCACTAGACGGTGT 89
BSNT_02190___ 90 CACCTTTCAGATTCGTG----AAGGAGAAACGTTCGGGCTAGTCGGGGAA 135
|.|||||||| .|| ||||.|||||.||.||.||.||.||.||.
BPUM_1192 90 CTCCTTTCAG----TTGAAACAAGGCGAAACATTTGGCCTTGTTGGCGAG 135
BSNT_02190___ 136 TCAGGGTGCGGGAAATCAAC-CTTGGGGAGAGTGCTGATGCGCCTTTATC 184
||.||.|||||||||||.|| ||| ||.|.||||||.||||||||||||.
BPUM_1192 136 TCCGGCTGCGGGAAATCCACACTT-GGAAAAGTGCTTATGCGCCTTTATG 184
BSNT_02190___ 185 AGCCGACAGAAG--GAAGC-----GTGACATACCGCGGCACAAATCTTCA 227
|.||.|||||.| ||||| .||| .||.|.||..|||||
BPUM_1192 185 AACCAACAGATGGAGAAGCCTTGTATGA-------AGGGAAAAGCCTTCA 227
BSNT_02190___ 228 TGCGCTGAGTGAAAAAGAGCAGTTTGCCTTCAA-CCGCAAACTGCAGATG 276
|...||.....|||||||....||||..||.|| |.||||| |.||.|||
BPUM_1192 228 TCACCTTTCACAAAAAGAATCCTTTGATTTTAATCGGCAAA-TTCAAATG 276
BSNT_02190___ 277 ATTTTTCAGGACCCCTATGCTTCACTTAACCCGCGCATGACCGTTCGAGA 326
.|.|||||.||.||.|||.||||.||.||.|||||..||.|.||...|||
BPUM_1192 277 GTGTTTCAAGATCCGTATTCTTCCCTGAATCCGCGGCTGTCTGTCAAAGA 326
BSNT_02190___ 327 AATTATTTTGGAGCCGATGGAGATTCACAATCTCTACAATACCCA----T 372
.||.||..|||||||.|||||||||||.||.||.||.|..|..|| .
BPUM_1192 327 TATCATGCTGGAGCCAATGGAGATTCATAACCTTTATAGGAGTCAAAAGA 376
BSNT_02190___ 373 AAAGCGCGGCTTCTCGTCGTGGACGAGCTGCTTGAGGCAGTTGGGCTT-- 420
||||.|.||| |...|||.|.||.||.||.||.||.|||||.|||
BPUM_1192 377 AAAGGGTGGC----CCGGGTGAAAGAACTACTGGAAGCTGTTGGACTTAG 422
BSNT_02190___ 421 -CATCCCGATTTTGGCAGCCGTTATCCGCATGAATTCAGCGGCGGGCAAA 469
.|| ||.||||.||..||.||.||.|||||||||||.||.|||||.|
BPUM_1192 423 CTAT---GACTTTGCCACTCGCTACCCTCATGAATTCAGTGGAGGGCAGA 469
BSNT_02190___ 470 GGCAGAGAATCGGGATTGCCAGAGCACTGTCGC---TGAATCCTGAATTT 516
|||||||||||||.|||||.||.|||| |||| .|.| ||..|||||
BPUM_1192 470 GGCAGAGAATCGGTATTGCAAGGGCAC--TCGCCTTAGCA-CCGAAATTT 516
BSNT_02190___ 517 ATCGTGGCGGACGAACCGATTTCTGCACTTGATGTCTCTGTTCAAGCGCA 566
||.|||||.||.||.||.|||||||||||.||||||||.|||||||||||
BPUM_1192 517 ATTGTGGCAGATGAGCCCATTTCTGCACTAGATGTCTCCGTTCAAGCGCA 566
BSNT_02190___ 567 GGTGGTCAACCTGCTGAAGCGGCTTCAAAAAGAGAAAGGGCTAACGTTTT 616
|||.||.||.|||||.||.....|.|||||.|||.|||||||.||.|||.
BPUM_1192 567 GGTTGTGAATCTGCTAAAAAAATTGCAAAAGGAGGAAGGGCTGACATTTC 616
BSNT_02190___ 617 TATTCATTGCCCATGATCTTTCGATGGTGAAGCATATCAGTGACAGGATC 666
|.||.|||||.||||||||.||||||||.||..|||||||.|||.|.|||
BPUM_1192 617 TCTTTATTGCGCATGATCTGTCGATGGTCAAATATATCAGCGACCGAATC 666
BSNT_02190___ 667 GGTGTCATGTACTTAGGGCACATGATGGAAATTAC----AGAGA-GCGGC 711
|||||||||||.|||||.||..|..|.|||.|.|| ||.|| |||
BPUM_1192 667 GGTGTCATGTATTTAGGTCATCTCGTCGAATTGACCAGTAGTGATGCG-- 714
BSNT_02190___ 712 ACCTTGTATCGTGAACCGCTCCATCCCTATACAAAGGCGCTT-TTGTCCT 760
||.||||....||||||.||.||.||.|||.|.|| ||| .||||..
BPUM_1192 715 ---TTATATCAAACACCGCTGCACCCATACACACAAGC-CTTGCTGTCAG 760
BSNT_02190___ 761 CGATTCCCATTCCAGATCCTGAATTGGAGGACAAGCGTGAGCGTATTC-T 809
||||.|||||||||||||||||..|||||||||||||..|..| .||| |
BPUM_1192 761 CGATCCCCATTCCAGATCCTGACGTGGAGGACAAGCGCAAAAG-GTTCAT 809
BSNT_02190___ 810 CTTAAAAGGAGAGCTGCCGAGCCCGGTCAATCCGCCAAGCGGCTGCGTGT 859
.|||||||||||..|.||.||.||.||.|||||||||||||||||.||.|
BPUM_1192 810 TTTAAAAGGAGAAATTCCAAGTCCAGTGAATCCGCCAAGCGGCTGTGTAT 859
BSNT_02190___ 860 TTCGGACCCGCTGTCCGGAGGCGATGCCTGAATGTGGGGAATCCCGTCC- 908
||||.||..|.|||||.|..||||||..||..||||..|||
BPUM_1192 860 TTCGAACAAGGTGTCCTGCAGCGATGGATGTGTGTGCTGAA--------A 901
BSNT_02190___ 909 -----CCAGC--TTCAAGAAATCGAACCCGGCCGTTTTGTCGCTTGCCAT 951
|||.| |.||||...|.|||...||.|.|..||||||.||.|||
BPUM_1192 902 AAAAGCCAACATTACAAGCGGTAGAAGAGGGGCATGATGTCGCCTGTCAT 951
BSNT_02190___ 952 CTGTATCGAAATGCTGAAACGAAGGAAAAAGTGAGATAA 990
|.|.||||..| ||.||||
BPUM_1192 952 --------------TTATACGACCG-------GACATAA 969
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