Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02189 and BPUM_1191
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_02189___ykfC.1.24716.seq
# -bsequence dna-align/BPUM_1191___ykfC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02189___ykfC-BPUM_1191___ykfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02189___ykfC-BPUM_1191___ykfC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02189___ykfC
# 2: BPUM_1191___ykfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1065
# Identity: 550/1065 (51.6%)
# Similarity: 550/1065 (51.6%)
# Gaps: 321/1065 (30.1%)
# Score: 1204.0
#
#
#=======================================
BSNT_02189___ 1 ATGATGCACACTGTCAT----ATCA------GCAGTGGCCAACATCTGGA 40
||||| || |||| |||||.||.|||.|.||||
BPUM_1191___y 1 ATGAT----------ATTTGAATCAAAGGTTGCAGTCGCGAACGTATGGA 40
BSNT_02189___ 41 CAGCGCCTGATTCACCGCGCCCGTCT-------GATCAA-------TTCA 76
||.||||..|.||||||.| |||||| ||||
BPUM_1191___y 41 CAACGCCGCAGTCACCGAG-------AGAAATGGATCAAAAGGTTCTTCA 83
BSNT_02189___ 77 ----TGCTTCAACCGACTGTAATGATCAGAGACTGGCTGGAGCGCATG-- 120
|.|||||| |||| |.|||.|||.|.|| ||.|
BPUM_1191___y 84 GAGCTCCTTCAA--------AATG---AAAGAGTGGATTGA---CAAGCA 119
BSNT_02189___ 121 -ACGTATGATGAAA----GGCTTGGATTATGTACAGACAATGTAATCCAA 165
||.|||||.|||| |||| ||||||..|||.|||.|..||||.
BPUM_1191___y 120 AACATATGAAGAAAAACTGGCT----TTATGTGAAGAAAATCTGCTCCAG 165
BSNT_02189___ 166 ACTCAGGTTCTCTTTGGCGAAAAGGTACTT---------GTGACAG-CGG 205
.|.||.||.||..|.||.|||...||..|| |.||||| |||
BPUM_1191___y 166 TCGCAAGTACTGCTCGGTGAACGAGTCATTGGCTTAGAAGAGACAGACGG 215
BSNT_02189___ 206 AACAGGAGGAATGGGTTTCTGTGATCGTGCCTAGCCAGCCATCCCGAAAG 255
|.|||.||| ||| .||.|| |.|..|||..|||| ||||.||.
BPUM_1191___y 216 --CTGGATGAA--GGT---CGTCAT--TCCGCAGCAGGCCA-CCCGGAAA 255
BSNT_02189___ 256 GATCCGCGCGGATACCCGGGCTGGAT------GAA------AAAGAACCA 293
.||||||..||.|||||.||||..|| ||| |||| ||
BPUM_1191___y 256 CATCCGCAAGGCTACCCTGGCTATATACCTGCGAACCAACTAAAG---CA 302
BSNT_02189___ 294 GCTGGCAAAATCTA-TGC-CCATCCAT-TCACAACACGATGTGATGATCA 340
..||.||.||...| ||| |||.|.|| ||.||...||.| || |||
BPUM_1191___y 303 AGTGACAGAAGGAAGTGCGCCAGCTATATCTCATATCGTT----TG-TCA 347
BSNT_02189___ 341 GCAAA----CCTGCTGCCTTTTTGTACAAAA---GCAATGAAGAAAAGGA 383
|.||| |.|||| ||.| |.||| || ||..|||
BPUM_1191___y 348 GAAAAGAGCCATGCT--CTAT-----CGAAACGGGC-------AAGCGGA 383
BSNT_02189___ 384 GATCGAATTGAGCTTTTTGACAGTTCTCCC--CCTCATTGCAGAAGAAAA 431
.||.|||.|.||.|||||.||||..|||.| | ||.||||| |||
BPUM_1191___y 384 CATGGAAATTAGTTTTTTAACAGAGCTCGCAGC-----TGTAGAAG-AAA 427
BSNT_02189___ 432 CG---GATATTTTAAGGTTTCGACTGTTTT---------------GGGAG 463
|| ||| .|.||||| .|||.| |.|||
BPUM_1191___y 428 CGAGTGAT------CGCTTTCG--CGTTGTCACACCAGCAGGGACGAGAG 469
BSNT_02189___ 464 ATAGGTTTGTGAAGCAAAGTGATG----------------CAGTGCC--- 494
|.| |.||..|||..|||| ||.|.||
BPUM_1191___y 470 AAA------TCAATAAAACAGATGTGCAACCAGTTTCCTCCACTTCCGAT 513
BSNT_02189___ 495 -TGTCAGCAAACAGA----------AAGGGACTGCTGAAGACA--TCATT 531
||.|.|.||| ||| |||| |||.||| |.|||
BPUM_1191___y 514 ATGACTGGAAA-AGATGTTGTAGAGAAGG-------GAAAACAATTTATT 555
BSNT_02189___ 532 CAAACGGGAGCTTTTTTTCTCGGACTTCCCTACCTATGGGGAGGGATCAG 581
||.|||| |.||..|||||||.||.||.||
BPUM_1191___y 556 -------GATCTTT--------------CGTATTTATGGGGTGGTATGAG 584
BSNT_02189___ 582 CGGGTTTGGGTTTGATTGCTCCGGTTTTATGTACAGTATATTTAAGGCGA 631
|.|.|||||.|.|||.||.||.||.|||...|||||.||.|.|||.|||.
BPUM_1191___y 585 CAGCTTTGGCTATGACTGTTCAGGCTTTGCTTACAGCATGTATAAAGCGT 634
BSNT_02189___ 632 ATGGATACAGCATC-----CCCCGTGATGCGGGAGATCAGGCTAAG-GCG 675
..|||| ||| ||..|.||.||..|.||.||.|| || ||
BPUM_1191___y 635 GCGGAT-----ATCTTTTGCCGAGAGACGCAAGTGACCAAGC--AGTGC- 676
BSNT_02189___ 676 GGGAAG-------GGTGTCCCGC-TTGATG--ATATGAAAGCCGGTGATC 715
||| ||| ||| |.|| | ||.|.|||...||.||..
BPUM_1191___y 677 ---AAGGTACACCGGT----CGCATCGA-GCCATTTAAAACAAGGCGACT 718
BSNT_02189___ 716 TGCTGTTTTTTGCTTATGAGGAAGGAAAAGGAGCGATTCATCACGTCGGT 765
|..|||||||.||..||||..|.|||||.|||||..|.|..||.||.||.
BPUM_1191___y 719 TATTGTTTTTCGCCAATGACAATGGAAAGGGAGCTGTACGCCATGTTGGG 768
BSNT_02189___ 766 CTGTATGTAGGCGGCGGGAAAATGCTGCATTCTCCAAAGACAGGAAAATC 815
.|.||.|.|||.|.|||.|..|||||.||.||.||.||.||.||.|||..
BPUM_1191___y 769 ATCTACGCAGGTGACGGTATGATGCTTCACTCGCCTAAAACCGGCAAAGA 818
BSNT_02189___ 816 AATTGAAATCCTT------------ACATTAAAAGACATAATCTATGAAA 853
|||||||.|.||| ||.|.| |||||||
BPUM_1191___y 819 AATTGAACTTCTTTTCTTTTCTGGCACTTCA------------TATGAAA 856
BSNT_02189___ 854 AAGAACTTTGTGC-GGTGC--GCCGCTGTTTTTCA--------GAATAA- 891
||||| ||.|| ||||| |.||.|.|||..|| ||..||
BPUM_1191___y 857 AAGAA---TGGGCAGGTGCAAGACGGTATTTGCCAAGCGAAGGGAGCAAA 903
BSNT_02189___ 891 --------------- 891
BPUM_1191___y 904 GGTCATGGCAGTTGA 918
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