Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02188 and BPUM_1190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_02188___ykfB.1.24716.seq
# -bsequence dna-align/BPUM_1190___ykfB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02188___ykfB-BPUM_1190___ykfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02188___ykfB-BPUM_1190___ykfB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02188___ykfB
# 2: BPUM_1190___ykfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1182
# Identity: 740/1182 (62.6%)
# Similarity: 740/1182 (62.6%)
# Gaps: 204/1182 (17.3%)
# Score: 2122.5
#
#
#=======================================
BSNT_02188___ 1 ATGAAAATCATTCGA--ATCGAAACAAGCCGAATCGCAATTCCGCTGACA 48
||||||||| .|||| .||| .|||.||.||||.....|.||.||.|.|
BPUM_1190___y 1 ATGAAAATC-GTCGATGTTCG-CACATGCAGAATGAGTGTACCACTAAAA 48
BSNT_02188___ 49 AAGCCGTTTAAAACCGCGCTTCGCACTGTGTAT-ACGGCTGAATCAGTCA 97
|||||.||.||||||||..|.||.||.|||||| || ||.|.|||..|.|
BPUM_1190___y 49 AAGCCTTTCAAAACCGCTTTGCGAACGGTGTATGAC-GCAGCATCTCTGA 97
BSNT_02188___ 98 TAGTAAGGATTACTTATGA-CAGCGGTGCAGTCGGATGGGGAGAAGCACC 146
|.||.|...|.||.||||| || .||||..|||.|.|..|||||.|||..
BPUM_1190___y 98 TCGTTATCGTCACATATGATCA-AGGTGACGTCAGCTACGGAGAGGCAGT 146
BSNT_02188___ 147 CCCGACGTTAGTGATTACAG--GAGACAGCATGGATAGCATTGAAAGTGC 194
.|||||....|||||||||| ||||| || ||||.|||||.||...|||
BPUM_1190___y 147 TCCGACTGCCGTGATTACAGGTGAGAC-GC-TGGAAAGCATCGACTATGC 194
BSNT_02188___ 195 CAT-TCACAATGTTTTAAAACCGGCATTGCTTGGAAAAAG-----CCTGG 238
||| |...|| ||..|.|.||||...||.||||| | |.||.
BPUM_1190___y 195 CATCTGTGAA-GTGATCAGACCGATCTTACTTGG-----GGCTTCCTTGT 238
BSNT_02188___ 239 CGGGCTATGAGGCCA---TTCTGCACGACATCCAGCATCTT-------CT 278
|.|..||||| .|| ||.|.|.||| || |.|||.| ||
BPUM_1190___y 239 CTGAGTATGA--ACAAATTTTTTCTCGA-AT---GAATCGTGTGCTCGCT 282
BSNT_02188___ 279 TACAGGAAATATGAGCGCGAAGGCTGCTGTAGAAATGGCTCTATACGACG 328
| |.||.|..|||||.|||||.||.||.||.|||||..|.||.||.|
BPUM_1190___y 283 T----GCAACACAAGCGCAAAGGCAGCGGTTGACATGGCCATTTATGATG 328
BSNT_02188___ 329 GCTGGGCGCAGATGTGC-GGGCTGCCGCTTTATCAAATGCTTGGCGGATA 377
|||..|||.||..| || ||.||.||.|||||||||...|||||||||||
BPUM_1190___y 329 GCTTAGCGAAGCAG-GCAGGACTTCCCCTTTATCAATACCTTGGCGGATA 377
BSNT_02188___ 378 TCG-AGATACACTGGAAACAGATTATACCGTCAGTGTCAAC---TCACCT 423
||| || |..|||.|||||.||||||||.||||||||.||| .|||.|
BPUM_1190___y 378 TCGCAG-TCAACTTGAAACCGATTATACGGTCAGTGTAAACCGTCCACTT 426
BSNT_02188___ 424 GAAGAGATGGCAGCTGATGCCGAGAATTATCTCA-AACAAGGCTTTCAAA 472
||||||||.|..|||||..||.|.|| |.|| .|.||||||||||.|
BPUM_1190___y 427 ---GAGATGGCGGAAGATGCGAAGCAATA-CGCAGCAGAAGGCTTTCAGA 472
BSNT_02188___ 473 CGCTGAAAATAAAGGTCGGAAAAGATGATATTGCAACAGATATCGCCCGT 522
|..|.||.||.|||||.|||||||||||.||.|..||.|||||....||.
BPUM_1190___y 473 CATTAAAGATCAAGGTAGGAAAAGATGACATAGACACGGATATTCAGCGA 522
BSNT_02188___ 523 ATCCAG-GAAATC-AGAAAACGT-----------GTCGGATCA-GCTGTG 558
|||.|| |||.|| ||||||.|| .||.||||| ||| ||
BPUM_1190___y 523 ATCAAGCGAATTCGAGAAAAGGTCGGGCCAGATATTCAGATCAGGCT-TG 571
BSNT_02188___ 559 AAACTGCGTTTAGACGCTAATCAGGGGTGGAGGCCGAAGGAAGCGGTAAC 608
| |||| ||||||||.||||.|..||||||||||||...
BPUM_1190___y 572 A---TGCG----------AATCAGGGCTGGACGTGGAAGGAAGCGGTCGT 608
BSNT_02188___ 609 TGCCATTCGGAAAATGGA------GGATGCGGGTCTAGGCATTGAGCTTG 652
.||||||||||||||||| |.|| ||.||.||.|
BPUM_1190___y 609 AGCCATTCGGAAAATGGAGTCACTGAAT------------ATCGAACTAG 646
BSNT_02188___ 653 TCGAGCAGCCTGT-CCATAAAGACGATCTCG-----CTGGGC--TTAAAA 694
|||||||.||.|| ||| |||||.|||.||| |||.|| |
BPUM_1190___y 647 TCGAGCAACCAGTGCCA-AAAGAAGATATCGAAGGCCTGCGCCGT----- 690
BSNT_02188___ 695 AGGTGACAGATGCAACAGATACGCCGATTATGGCTGATGAAAGTGTTTTT 744
|||||.||.|||||||||||.|.|||||||||.||.||||||.|||||
BPUM_1190___y 691 --GTGACGGAGGCAACAGATACACTGATTATGGCAGACGAAAGTATTTTT 738
BSNT_02188___ 745 A-----CACCGCGCCAGGCGTTCGAAGTTCTGCAAACCCGGAGCGCAGAC 789
| || ..|.|||.|..||||.||..||||..|.|||...||.
BPUM_1190___y 739 AGTTTTCA-----TGATGCGATTAAAGTGCTTGAAACGAGAAGCTGTGAT 783
BSNT_02188___ 790 TTGATCAATATTAAATTGATGAAAGCGGGCGGCATCAGCGGAGCAGAG-- 837
|||||||||.|.|||||.||||||.|.|||||||| |..||||
BPUM_1190___y 784 TTGATCAATTTAAAATTAATGAAATCAGGCGGCAT------AAAAGAGGC 827
BSNT_02188___ 838 ----AAAATTAATGCTATGGCGGAGGCCTGCGGGGTGGAGTGTATGGTCG 883
||||||||.|||.|.||.||.||.|.|||.||..||||||||||.|
BPUM_1190___y 828 TTTAAAAATTAACGCTTTAGCAGAAGCATACGGCGTCAAGTGTATGGTTG 877
BSNT_02188___ 884 GCAGCATGATCGAAACGAAGCTGGGCATTACGGCCGCGGCGCATTTTGCG 933
||||||||||.||..|.||.||.||.|||||.||.||.||.|||.|.||.
BPUM_1190___y 878 GCAGCATGATTGAGTCAAAACTTGGGATTACAGCAGCCGCTCATCTCGCC 927
BSNT_02188___ 934 GCAAGCAAGAGAAACATCACACGCTTTGATTTTGACGCGCCGCTGATGCT 983
|||||..||...||.|||||.||||..||||||||.||.|||||||||||
BPUM_1190___y 928 GCAAGTCAGCCGAATATCACCCGCTACGATTTTGATGCTCCGCTGATGCT 977
BSNT_02188___ 984 GAAAACAG---ATG----------------TATTCAAAGGCGGCATAACA 1014
||||.|| ||| |||.|||||| |.||.|
BPUM_1190___y 978 -AAAAGAGGACATGGTAGACGGAGGTATCTTATACAAAGG----AAAAGA 1022
BSNT_02188___ 1015 TAT--------AGCGGCA-------GTACGATTTCGATGCCTGGCAAACC 1049
||| .||.||| .||.|..|||||.|..|| |||
BPUM_1190___y 1023 TATCTTTTTCCCGCCGCAACATGGGTTAGGCATTCGAGGGGTG--AAA-- 1068
BSNT_02188___ 1050 GG-GCCTCGGAATCACCGGGACTGCGCTTTGA 1080
|| |.||| ||.|
BPUM_1190___y 1069 GGAGTCTC---ATGA----------------- 1080
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