Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02187 and BPUM_1189
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_02187.1.24716.seq
# -bsequence dna-align/BPUM_1189___ykfA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02187-BPUM_1189___ykfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02187-BPUM_1189___ykfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02187
# 2: BPUM_1189___ykfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1047
# Identity: 634/1047 (60.6%)
# Similarity: 634/1047 (60.6%)
# Gaps: 210/1047 (20.1%)
# Score: 1762.5
#
#
#=======================================
BSNT_02187 1 TTGAATTACAAGCCGAAAGC--------GC---TGAAAAAGGGTGATACA 39
|..|||| ||| || |.|||.|||| ||||||
BPUM_1189___y 1 -------ATGAGCC---AGCTGCCAGTGGCACTTCAAACAGGG-GATACA 39
BSNT_02187 40 GTCGGAGTGATCGCGCCCGCAAGTCCGCCGGATCA------------AAA 77
||.||.||.||.||.||.|||||.|||||.|||.| |||
BPUM_1189___y 40 GTGGGGGTTATTGCCCCAGCAAGCCCGCCTGATGAGCTGAAATTAGCAAA 89
BSNT_02187 78 AAAGCTTGACACCGCTCTTTTATTTTTAGAAGAG-CTCGGTCTTCAGGTG 126
|..|.|||.| ||||||||| || |||||.||..|||||
BPUM_1189___y 90 AGGGATTGCC------------TTTTTAGAA-AGCCTCGGGCTAAAGGTG 126
BSNT_02187 127 AAGTTGGGCAAGGCGCTGAAAA-------------ACCAGC---ACGGCT 160
|| |||| |||.|| |.||.|
BPUM_1189___y 127 AA----------------AAAAGGGAAGTATTTGGACCGGCGGTATGGAT 160
BSNT_02187 161 ATTTAGCGGGACAGGATGATGAGCGGCTGGCGGATCTCCATGAGATG-TT 209
|||||||.||.||.|||.||||..|..|||..|||||.|||...||| ||
BPUM_1189___y 161 ATTTAGCAGGTCATGATCATGAAAGAGTGGAAGATCTTCATTGCATGTTT 210
BSNT_02187 210 CAGAGA-CGAGGAGGTAAAAGCAGTGTTGTGCGCATGCGGGGGTTTTGGG 258
|| ||| |.| |||||.|||||.||..|.||.||.|||||.||.|..|||
BPUM_1189___y 211 CA-AGATCCA-GAGGTGAAAGCGGTTATTTGTGCTTGCGGAGGATACGGG 258
BSNT_02187 259 ACAGGACGTATCGCCGCGGGCATTGA-TTTCAGCTTGATCCGCAAACACC 307
||.||..|..|.||.|..|.||||.| |.|.| |.||||.|||....|.|
BPUM_1189___y 259 ACTGGCAGACTTGCGGAAGCCATTAACTATGA-CCTGATTCGCCGGAATC 307
BSNT_02187 308 CTAAAATCTTTTGGGGATACAGCGATATTACGTTTTTACATACTGCCATT 357
|.||||||||||||||.||||||||||||||||||||||||||.||.||.
BPUM_1189___y 308 CAAAAATCTTTTGGGGCTACAGCGATATTACGTTTTTACATACGGCGATC 357
BSNT_02187 358 CATCAAAACACAGGTCTTGTCACCTTCCATGGCCCAATGCTCAGCTCGGA 407
||.||..|.|||||||||||.||.||.|||||.|||||||||..|||.||
BPUM_1189___y 358 CAGCAGCAGACAGGTCTTGTGACGTTTCATGGTCCAATGCTCTCCTCTGA 407
BSNT_02187 408 CATTGGCCTTGACGACGTTCACCCGCTGACAAAAGCGTCATA------TA 451
..|.||.|||||.||.||.||.||....||.|||| ||| ||
BPUM_1189___y 408 TGTGGGACTTGAGGAGGTCCATCCTTATACGAAAG----ATACCTTTTTA 453
BSNT_02187 452 AGCAGCTCTTCCAGGAG-ACGGAATTCACCTATACAGAAGAG-------- 492
|||||.||| | ||.||| .||||.|||..|.|.|
BPUM_1189___y 454 --CAGCTGTTC-----GCACCGAA--AACCTTTACGTATGCGCACCACTT 494
BSNT_02187 493 --------------CTTTC--TCCGCTGACCGCGCTTGTTCCTGGAAAAG 526
||||| ||||...||||| |||
BPUM_1189___y 495 GTCACCCCTTCATACTTTCTATCCGGGCACCGC-----TTC--------- 530
BSNT_02187 527 CGGAAGGCGAGCTTGTCGGGGGAAATCTGTCTTTG--CTGA-CGT--CTA 571
|||.|||.||||.||.||||||| ||| ||.| ||| |.|
BPUM_1189___y 531 ----AGGTGAGATTGTAGGAGGAAATC-----TTGCCCTCATCGTCACAA 571
BSNT_02187 572 CACTGGGCACGCCATTTGAAATTGATACGAGAGGAAAGCTTCTGTTTATT 621
||||.||.||.||.||||||||.|||||||..|||||||||.||||.|||
BPUM_1189___y 572 CACTTGGTACACCTTTTGAAATCGATACGAAGGGAAAGCTTTTGTTCATT 621
BSNT_02187 622 GAAGATATTGACGAGGAGCCTTATCAAATCGACCGAATGCTAAATCAGTT 671
||||||||||||||.||.||.|||.||||.||.||||||.|..|.||..|
BPUM_1189___y 622 GAAGATATTGACGAAGAACCCTATAAAATTGATCGAATGATGCAGCACCT 671
BSNT_02187 672 GAAAATGGCGGGGAAGCTGACGGACGCGGCCGGAATTC-TAGTTTGTGAT 720
.|.|...||.|||||..||...||.|||||.|| |||| |..||.|.|||
BPUM_1189___y 672 CACATCTGCTGGGAAATTGGATGATGCGGCTGG-ATTCATCATTGGAGAT 720
BSNT_02187 721 TTTCA-CAATTGTGTCCCGGTGAAGCGAGAGAAGTCTCTCTCGCTTG-AG 768
||||| ||| ||||..||....|||..|||..||||.|||.| .||| |.
BPUM_1189___y 721 TTTCATCAA-TGTGAGCCAAAAAAGAAAGATCAGTCCCTCAC-ATTGAAT 768
BSNT_02187 769 CAGGTGCTGGAAGAC-TATATTATTTCTGCGGGC-----AGGCCTGCTCT 812
||.|| .|||.|.|| ||||||.|..| || |.||||||.||
BPUM_1189___y 769 CAAGT-ATGGGACACATATATTGTGCC-----GCAAAAGAAGCCTGCACT 812
BSNT_02187 813 GAGAGGATTTAAAATCGGCCA--CTGCTCGCCAAGTATTGCCGTTCCGAT 860
..|.||.|||...|||||.|| ||.||| |.||.| |||||.||||.||
BPUM_1189___y 813 TGGGGGCTTTCGGATCGGTCATTCTTCTC-CGAACT-TTGCCATTCCAAT 860
BSNT_02187 861 CGGTGCGAAAGCTGCTATGA-AT---ACAGCAGAAAAAACAG-------- 898
.||..|..|.||||| ||.| || ||||.| |||||||.|
BPUM_1189___y 861 GGGCACACAGGCTGC-ATTAGATGCGACAGGA-AAAAAACTGCACATTTC 908
BSNT_02187 899 TCGTAATAGAGGCGGGCGTTTCAG---AAGGGGCGCTGAAGACATGA 942
|| |.||||||.||| |||.||| ||..||||||
BPUM_1189___y 909 TC----------CAGGCGTTGCAGCGAAAGAGGC---GATCACATGA 942
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