Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02184 and BPUM_1187
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_02184___dppD.1.24716.seq
# -bsequence dna-align/BPUM_1187___dppD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02184___dppD-BPUM_1187___dppD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02184___dppD-BPUM_1187___dppD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02184___dppD
# 2: BPUM_1187___dppD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1098
# Identity: 712/1098 (64.8%)
# Similarity: 712/1098 (64.8%)
# Gaps: 180/1098 (16.4%)
# Score: 2256.5
#
#
#=======================================
BSNT_02184___ 1 ATGGAAAAAGTTCTGTCAGTCCAAA------ATCTGCACGTGTCTTTTAC 44
.||.||||||||| |.|||| ||||||||||....|||..
BPUM_1187___d 1 TTGAAAAAAGTTC------TACAAATCATCGATCTGCACGTCAGCTTTCG 44
BSNT_02184___ 45 GACTTACGGCGGGACGGTTCAGGCGGTCAGAGGGGTGAGCTTTGATTTGT 94
|||.||.|||||..|.||||..|||||..|.||.||||...|.|||.|.|
BPUM_1187___d 45 GACATATGGCGGCTCAGTTCGAGCGGTACGCGGAGTGAATGTGGATGTAT 94
BSNT_02184___ 95 ATCAAGGAGAAACCTTTGCGATCGTCGGCGAATCCGGCTGCGGCAAAAGC 144
||.||..|||||||.||||.||.||.||.||.||.||||||||.|||||.
BPUM_1187___d 95 ATGAAAAAGAAACCCTTGCCATTGTAGGAGAGTCAGGCTGCGGGAAAAGT 144
BSNT_02184___ 145 GTGACCTCCCAAAGCATCATGGGCCTGCTTCCGCCTTATTCGGCG---AA 191
||.||.||.||||||||.|||.|.|||||.||..|||| |.||| |.
BPUM_1187___d 145 GTCACTTCACAAAGCATTATGAGGCTGCTACCAGCTTA--CAGCGCTCAT 192
BSNT_02184___ 192 GGTGA-CAGACGGCAGCATTCTATTTAAAAACAT-------AGACC---- 229
|.||| ||| || |.|||.|| |||||
BPUM_1187___d 193 GTTGATCAG--GG-------------AGAAATATGGTTTGAAGACCGCAA 227
BSNT_02184___ 230 TTTGCCGTC--TCTCTGACAAAGAAATGAGAGGTATAAGGGGAGCCGACA 277
|||.|.||| |.|||||.|||||||||.|.|..|||||.||.|.|||.|
BPUM_1187___d 228 TTTACTGTCTTTATCTGAAAAAGAAATGCGCGCCATAAGAGGTGTCGATA 277
BSNT_02184___ 278 TTTCTATGATTTTTCAAGACCCGATGACGGCGTTAAACCCTACGCTGACT 327
||||.||||||||.|||||.||.|||||.||..|.||.||.||..||||.
BPUM_1187___d 278 TTTCGATGATTTTCCAAGATCCCATGACCGCACTGAATCCAACTTTGACA 327
BSNT_02184___ 328 GTCGGCGACCAGCTGGGGGAAGCGCTATTGCGCCACAAAAAAATGAGCA- 376
.|||||||.|||||...|||.||| || |||.|||||
BPUM_1187___d 328 ATCGGCGATCAGCTCATGGAGGCG-------GC-------AAAGGAGCAT 363
BSNT_02184___ 377 AAAAAGCGGCACG--GAAAGAGGTG-----------CTTTC-CATGCTGT 412
.||||||.| ||| .|||||.||| |.||| .||||| |
BPUM_1187___d 364 CAAAAGCTG-ACGAAAAAAGAAGTGAAAGAAGCCGCCATTCGAATGCT-T 411
BSNT_02184___ 413 CA-TTGGTTGGTATTC--CAGATCCCGAA-GAGCGCCTAAAGCAATATCC 458
.| |||||.||||||| ||| ||||| ||..|.|||||||||||.||
BPUM_1187___d 412 GATTTGGTCGGTATTCCGCAG---CCGAAGGAAAGGCTAAAGCAATACCC 458
BSNT_02184___ 459 CCACCAATTCAGCGGCGGCATGAGACAGCGGATTGTCATTGCGATGGCGC 508
.||.||.||||||||.||.|||||.||||||.||.|.|||||.|||||||
BPUM_1187___d 459 TCATCAGTTCAGCGGGGGAATGAGGCAGCGGCTTATGATTGCCATGGCGC 508
BSNT_02184___ 509 TGATTTGCGAGCCTGACATCTTAATTGCGGATGAACCGACCACCGCCCTG 558
||||||||||||||.|..|.||.|||||.||||||||.||.||.||.||.
BPUM_1187___d 509 TGATTTGCGAGCCTAAAGTGTTGATTGCTGATGAACCAACGACAGCGCTC 558
BSNT_02184___ 559 GATGTAACCATTCAGGCACAGATTTTAGAGCTGTTTAAAGAGATTCAGAG 608
|||||.|||||.||||||||.||.||||||||||||||||||||||||||
BPUM_1187___d 559 GATGTGACCATACAGGCACAAATATTAGAGCTGTTTAAAGAGATTCAGAG 608
BSNT_02184___ 609 AAAAACGAATGTGT--CTGTCATTCTGATTACGCACGATTTAGGGGTTGT 656
|||||| |.|||| |..|||||.|.||.||.||||||||||||||.||
BPUM_1187___d 609 AAAAAC--AGGTGTCACCATCATTTTAATCACACACGATTTAGGGGTCGT 656
BSNT_02184___ 657 TGCCCAGGTAGCTGACAGAGTCGCAGTCATGTATACCGGGAAAATGGCGG 706
.|||||.||.||.|||.||||.||.||||||||....||||||||||.||
BPUM_1187___d 657 AGCCCAAGTCGCAGACCGAGTGGCGGTCATGTACGGAGGGAAAATGGTGG 706
BSNT_02184___ 707 AAATCGGCACAAGAAAAGATATTTTTTATCAG-CCGCAGCACCCATATAC 755
|..|.||.||.||...|||||||||||| ||| ||||||||.||.|||||
BPUM_1187___d 707 AGGTTGGAACGAGGCGAGATATTTTTTA-CAGTCCGCAGCATCCTTATAC 755
BSNT_02184___ 756 AAAAGGCCTGCTGGGCTCTGTCCCGCGGCTGGATTTAGATGGCGCTGAGC 805
|||.||.||.|||...||.||.||..|.||.|||.|..|.|.| ||.|
BPUM_1187___d 756 AAAGGGACTTCTGCAATCCGTTCCAAGACTTGATATGAAAGAC---GAAC 802
BSNT_02184___ 806 TGACCCCGATTGACGGAACGCCGCCGGATTTATTTTCGCCTCCGCC---G 852
|....||.|||||.||||..|||||.||||||||| .||||||| |
BPUM_1187___d 803 TCGTTCCAATTGAAGGAAGCCCGCCTGATTTATTT---GCTCCGCCAAAG 849
BSNT_02184___ 853 GGCTGCCCGTTTGCCGCCCGCTGTCCGAACAGGATGGTTGTG----TGTG 898
|||||.||||.|.|.|..|||||.|| || |.||
BPUM_1187___d 850 GGCTGTCCGTATACAGATCGCTGCCC--------------TGCCGCTATG 885
BSNT_02184___ 899 ACAGG-GTGTACCCGGGCCAGACGATCAGATC--------TGACTCGCA- 938
| ||| .||| |||||.||| |||..||||
BPUM_1187___d 886 A-AGGTATGT-------------GATCATATCATGCCGCATGAAACGCAG 921
BSNT_02184___ 939 ----CACC----------GTCAACTGCTGGCTGCAGGATCAACGAGCAGA 974
|||| ||..|.||||||||.||.|||.|.||.||
BPUM_1187___d 922 CGGTCACCTACTCATACAGTGCATTGCTGGCTCCAAGATGAGCGTGC--- 968
BSNT_02184___ 975 GCATGCGGTGCTGTC----------AGGAGATGCGAAGGA----TTGA 1008
|||..|.||..|.|| ||| .||| ||||
BPUM_1187___d 969 GCAAACCGTTTTATCTTCAACACAAAGG--------GGGAGTTTTTGA 1008
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