Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02181 and BPUM_1184

See Amino acid alignment / Visit BSNT_02181 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:38
# Commandline: needle
#    -asequence dna-align/BSNT_02181___dppA.1.24716.seq
#    -bsequence dna-align/BPUM_1184___dppA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02181___dppA-BPUM_1184___dppA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02181___dppA-BPUM_1184___dppA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02181___dppA
# 2: BPUM_1184___dppA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 872
# Identity:     580/872 (66.5%)
# Similarity:   580/872 (66.5%)
# Gaps:          88/872 (10.1%)
# Score: 1824.5
# 
#
#=======================================

BSNT_02181___      1 ------ATGAAATTGTACATGTCAGTAGATATGGAAGGTATTTCGGGTCT     44
                           |||||..|.||..|.||.||.||||||||.||.|||.|.|||||
BPUM_1184___d      1 ATGGGGATGAAGCTCTATGTATCTGTCGATATGGAGGGAATTACTGGTCT     50

BSNT_02181___     45 TCCGGACGATACCTTTGTGGATTCCGGCAAGCGGAATTATGAACGCGG--     92
                     ..|.||..||||.|||||.|||.||.|..|||..||||||||.||.||  
BPUM_1184___d     51 AGCTGATCATACATTTGTCGATGCCCGTCAGCACAATTATGAGCGGGGCA    100

BSNT_02181___     93 --ACGGCTTATCATGACTGAAGAAGCAAACTACTGTATTGCTGAAGCGT-    139
                       |.|    ||||||||.|..||||..||...||||    .||.|| || 
BPUM_1184___d    101 GAAAG----ATCATGACGGGTGAAGTGAATGCCTGT----GTGGAG-GTA    141

BSNT_02181___    140 ----TTAACAGC--GGGTGTACCGAGGTGCTGGTCAATGACAGTCATTCG    183
                         ||  ||||  ||....|||||..|.||||||||||||||||||||.
BPUM_1184___d    142 CTTCTT--CAGCATGGCGCAACCGATATTCTGGTCAATGACAGTCATTCT    189

BSNT_02181___    184 AAGATGAATAATCTGATGGTTGAAAAGCTTCACCCTGAAGCAG-----AC    228
                     ||.|||||||||.||.||.|||||.|..|.||   ||||| ||     .|
BPUM_1184___d    190 AAAATGAATAATTTGTTGATTGAAGAATTGCA---TGAAG-AGGCATCTC    235

BSNT_02181___    229 TTGATTTCTGGTGACGTCAAACCATTTTCAATGGTGGAGGGACTGGATGA    278
                     || ||.||||||||||||||.||.|.|||||||||..|.||..|.|||.|
BPUM_1184___d    236 TT-ATATCTGGTGACGTCAAGCCTTATTCAATGGTTCAAGGGTTAGATCA    284

BSNT_02181___    279 TACGTTTACAGGCGCTTTGTTTCTCGGTTATCATGCGAGAGCCTCGACTC    328
                     .||.|.|.|.|..|||.|.|||.|.||.|||||||||||.||.||.|...
BPUM_1184___d    285 AACCTATGCCGCTGCTGTATTTTTAGGCTATCATGCGAGGGCGTCTATGA    334

BSNT_02181___    329 CCGGTGTCATGTCACACAGCATGATTTTCGGCGTCCGTCATTTTTACATA    378
                     ..|||||.|||||.|||||.||||||||.||.|||.|.||||||||||||
BPUM_1184___d    335 AAGGTGTGATGTCCCACAGTATGATTTTTGGTGTCAGACATTTTTACATA    384

BSNT_02181___    379 AACGATCGGCCTGTCGGTGAGCTTGGATTAAATGCATACGTTGCCGGTTA    428
                     ||.||||..||..|.|||||..|.||.||.|||||.||.|||||.||.||
BPUM_1184___d    385 AATGATCATCCAATTGGTGAAATGGGTTTTAATGCGTATGTTGCAGGCTA    434

BSNT_02181___    429 TTATGATGTCCCGGT-ATTAATGGTAGCCGGGGATGACCGGGCGGCGAAG    477
                     .||||.|||.||||| |||..||.|.| |||.|||||.|..||.||....
BPUM_1184___d    435 CTATGGTGTGCCGGTGATTCTTGTTTG-CGGAGATGATCAAGCAGCACTT    483

BSNT_02181___    478 GAAGCGGAAGAGCTTATCCCGAACGTGACGACAGCCGCAGTCAAACAAAC    527
                     |||||.|||.||||.||.||....||||..||||.||||||.|||.|.||
BPUM_1184___d    484 GAAGCAGAAAAGCTGATACCTGGTGTGAAAACAGTCGCAGTGAAAGAGAC    533

BSNT_02181___    528 CATTTCAAGATCCGCAGTGAAGTGCTTGTCCCCTGCGAAAG----CCGGA    573
                     |||.||||||||.||.|||||.||..|..|.|||||.||||    ||   
BPUM_1184___d    534 CATCTCAAGATCTGCTGTGAAATGTCTCACTCCTGCCAAAGTCAACC---    580

BSNT_02181___    574 CGGCTGTTGACAGAAAAAACCGCGTTTGCCCTGCAA----AA----CAAG    615
                                  ||.|||.|.||      |.||||    ||    |||.
BPUM_1184___d    581 -------------AACAAATCTCG------CAGCAAGTGGAAGCCGCAAT    611

BSNT_02181___    616 GACAAAG----------TCAAGCCGCTCACCCCGCCTGA-CAGGCCGGTT    654
                     ||.|.||          ||||||||||.||.||.||||| || ||||.|.
BPUM_1184___d    612 GAAACAGATTCATCACATCAAGCCGCTGACGCCTCCTGATCA-GCCGCTA    660

BSNT_02181___    655 CTGAGCATTGAATTCGCCAATTATGGCCAAGCAGAATGGGCGAATCTGAT    704
                     ||||..|||||.||.|||||||||||.|||||.||||||||.|||.|.||
BPUM_1184___d    661 CTGAAGATTGAGTTTGCCAATTATGGACAAGCTGAATGGGCAAATTTAAT    710

BSNT_02181___    705 GCCGGGAACGGAAATCA-AGACGGGAACTACAACCGTTCAATTTCAGGCG    753
                     |||.||.||.|..||.| .||.||| ||.|||||.||....|.|||.||.
BPUM_1184___d    711 GCCTGGTACTGCCATGATTGAAGGG-ACAACAACGGTGACGTATCAAGCA    759

BSNT_02181___    754 AAGGACATGCTTGAAGCCTATCAGGCGATGCTTGTCATGACTGAGCTTGC    803
                     .||.|.||..|.||.|||||.||.|||||||||||||||||.||||||||
BPUM_1184___d    760 GAGAATATATTAGAGGCCTACCAAGCGATGCTTGTCATGACAGAGCTTGC    809

BSNT_02181___    804 GATGCGGACATCATTCTGCTAA    825
                     ....||.|||.||||.||.|||
BPUM_1184___d    810 CGCACGTACAACATTTTGTTAA    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02181 and BPUM_1184

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
