Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02174 and BPUM_1179
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_02174___ykbA.1.24716.seq
# -bsequence dna-align/BPUM_1179___potE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02174___ykbA-BPUM_1179___potE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02174___ykbA-BPUM_1179___potE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02174___ykbA
# 2: BPUM_1179___potE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1369
# Identity: 956/1369 (69.8%)
# Similarity: 956/1369 (69.8%)
# Gaps: 95/1369 ( 6.9%)
# Score: 3109.0
#
#
#=======================================
BSNT_02174___ 1 ATG--CATTCTGAAG-ACAAC--GGTTTGAAAAAAGAGATAGGCCTCTTG 45
||| || ||| ||||| |..||.|||.|.||.||.|||.|.||.
BPUM_1179___p 1 ATGAACA-----AAGAACAACCAGCGTTAAAACAGGACATCGGCTTATTT 45
BSNT_02174___ 46 TTTGCCCTTACTCTTGTCATCGGAACCATTATCGGTTCTGGTGTTTTTAT 95
||.|||||..|||||||||||||.||.||||||||.||.||.||.|||||
BPUM_1179___p 46 TTCGCCCTATCTCTTGTCATCGGGACGATTATCGGGTCCGGCGTCTTTAT 95
BSNT_02174___ 96 GAAGCCCGGCGCTGTGCTTGCTTATTCAGGCGATTCAAAAATGGCGCTTT 145
||||||.|||...||.|||.|.||||||||....|||.|.||.||..|.|
BPUM_1179___p 96 GAAGCCAGGCAACGTCCTTTCCTATTCAGGAAGCTCAGATATCGCATTAT 145
BSNT_02174___ 146 TCGCCTGGCTGTTAGGCGGTATTTTAACACTGGCGGGCGGTTTGACAATC 195
||||.|||||||||||.||.|||.||||.||.||.|||||..|.||..|.
BPUM_1179___p 146 TCGCTTGGCTGTTAGGTGGCATTCTAACCCTTGCAGGCGGACTCACTGTT 195
BSNT_02174___ 196 GCGGAAATCGGAACGCAGATTCCAAAAACCGGCGGGCTTTATACGTACCT 245
||.|||||.||.||.||.||.||....||.|||||..|.|||.|.||.||
BPUM_1179___p 196 GCTGAAATTGGTACACAAATCCCTCGGACTGGCGGATTATATGCCTATCT 245
BSNT_02174___ 246 TGAAGAAGTGTACGGCGAGTTTTGGGGATTTTTGTGCGGCTGGGTGCAGA 295
||||||||||||.||.|||||||||||||.|||.||||||||||||||.|
BPUM_1179___p 246 TGAAGAAGTGTATGGTGAGTTTTGGGGATATTTATGCGGCTGGGTGCAAA 295
BSNT_02174___ 296 TTATCATTTACGGCCCGGCGATTATTGGCGCGCTGGGTTTATATTTTGGA 345
|||||||||||||.||.||.||.||.||.|||||.|||.|.||||||||.
BPUM_1179___p 296 TTATCATTTACGGACCTGCCATCATCGGTGCGCTTGGTCTTTATTTTGGT 345
BSNT_02174___ 346 TCTTTAATGGCGAATCT--------TTTCGGCTGGGGATCTGGACTATCA 387
||.||..|.||.|||.| ||||..|| .|.|||.|.| ||
BPUM_1179___p 346 TCATTGTTAGCCAATTTATTTTCTCTTTCTTCT----TTATGGTCGA-CA 390
BSNT_02174___ 388 AAAGTCATTGGAATTATAGCAGTTCTCTTTTTATGCGTCATTAATATTAT 437
|.| |||||.|||||..|.|||.|.||||||||..|.|||||.||.||
BPUM_1179___p 391 ACA---ATTGGCATTATCACTGTTTTATTTTTATGTTTGATTAACATCAT 437
BSNT_02174___ 438 CGGTACAAAATACGGCGGTTTTGTCCAAACGCTGACAACGATCGGAAAAC 487
.||.||||||||||||||||||||.||...||||||.||.||.|||||.|
BPUM_1179___p 438 GGGAACAAAATACGGCGGTTTTGTTCAGGGGCTGACCACCATTGGAAAGC 487
BSNT_02174___ 488 TGATTCCGATTGCCTGC-ATCATCATCTTTGGCCTTTGGAAAGGCGATCA 536
|..|.||||||||| || ||.||..|.||||||.|.||||||||..|..|
BPUM_1179___p 488 TTGTCCCGATTGCC-GCTATTATTGTGTTTGGCTTATGGAAAGGAAACGA 536
BSNT_02174___ 537 GCACATCTTCACAGCAGTAAACGAAAGCATTTCTGATATGAACTTCGGGG 586
..|.||.||.|..||.||.|||||.|||||..||.|.|||||||||||.|
BPUM_1179___p 537 AAATATTTTGATGGCTGTCAACGATAGCATCGCTCAAATGAACTTCGGTG 586
BSNT_02174___ 587 CGGCTATTTTAGCTACGTTGTTTGCTTATGACGGATGGATTCTCCTTGCC 636
|.||.||..|.||||||.|.|||||.|||||.||.|||||..|.|||||.
BPUM_1179___p 587 CAGCGATCCTGGCTACGCTTTTTGCCTATGATGGCTGGATATTGCTTGCT 636
BSNT_02174___ 637 GCTCTCGGCGGAGAAATGAAAAATCCCGAAAAGCTGCTGCCACGCGCTAT 686
||.||.|||||.|||||||||||.||.||.||.|||||.||.||.||.||
BPUM_1179___p 637 GCACTTGGCGGTGAAATGAAAAACCCAGAGAAACTGCTTCCTCGTGCAAT 686
BSNT_02174___ 687 GACGGGC-GGATTATTAATTGTAACGGCGATCTATATTTTCATTAA---- 731
|.|.||| ||||| ||||||||.|||||...||||.|.||||||||
BPUM_1179___p 687 GGCAGGCGGGATT-TTAATTGTCACGGCTTGCTATCTCTTCATTAATGTC 735
BSNT_02174___ 732 ----TTTTGCAT-TGCTTCACATCCTGTCAGC-GAACGAAATTGTCAC-G 774
|||||||| ||.|.| |||| ||.| ||||.|| || |
BPUM_1179___p 736 GCTCTTTTGCATGTGTTAC---------CAGCAGATC-AAATCGT-ACAG 774
BSNT_02174___ 775 CTTGGTGAAAATGCGACAAGCACCGCGGCAACCATGCTGTTCGGGTCAAT 824
|||||.||||||||||||||.||.||.||.||.|||||.||.||..||||
BPUM_1179___p 775 CTTGGAGAAAATGCGACAAGTACTGCTGCGACAATGCTCTTTGGACCAAT 824
BSNT_02174___ 825 TGGCGGAAAGCTGATCAGTGTAGGGATTATCGTCAGCATCTTTGGGTGCT 874
.||.||.|||.|.||.|||.|.||.||.|||.|.||.||||||||.||.|
BPUM_1179___p 825 CGGTGGTAAGGTCATTAGTATTGGCATCATCATTAGTATCTTTGGCTGTT 874
BSNT_02174___ 875 TAAATGGAAAGGTGCTTTCTTTCCCGCGTGT--TTCATTTGCAATGGCGG 922
|.||.||||||||.|||||.|||||.||||| || ||.||.|||||.|
BPUM_1179___p 875 TGAACGGAAAGGTTCTTTCATTCCCACGTGTGATT--TTCGCGATGGCAG 922
BSNT_02174___ 923 AACGCAAACAGCTTCCATTTGCTGAAAAAC--TGTCACATGTACACCCGT 970
|.||.||.||..|.||.||.|| |||..| |.||.|...|.|||||..
BPUM_1179___p 923 AGCGAAAGCAAATCCCTTTCGC--AAATGCGATTTCGCGGATTCACCCTA 970
BSNT_02174___ 971 CGTTCCGCACACCATGGATTGCAATTTCTTTTCAAATTGCT-TTAGC--- 1016
|.||....||||||||||||||..|.|.|.|.|||||| || .|.||
BPUM_1179___p 971 CATTTAAAACACCATGGATTGCTGTATTTGTACAAATT-CTGATCGCCAT 1019
BSNT_02174___ 1017 TTTGATTATGAT-GCTGATCAGCAACCCTGATAAGCTCTCAGAAATCTCC 1065
|.||.||||||| | |||||||.||.||.|||||.|||||..|.||.
BPUM_1179___p 1020 TGTGTTTATGATCG----TCAGCAATCCAGAAAAGCTGTCAGAGGTTTCG 1065
BSNT_02174___ 1066 ATTTTCATGATCTACATCTTTTATGTGATGGCCTTTTTTGCAGTGTTTAT 1115
||||||||||||||.|||||||||||.|||||||||||.|||||.||||.
BPUM_1179___p 1066 ATTTTCATGATCTATATCTTTTATGTCATGGCCTTTTTCGCAGTCTTTAA 1115
BSNT_02174___ 1116 TCTCCGCAAGC-GAGCAAAGGGAAAAAAGCGCGCCTACAGTGTTCCGCTT 1164
.||..|.||.| .|.|||| ||||...||||.||.||.||.||.||.|||
BPUM_1179___p 1116 ACTGAGAAAACAAAACAAA-GGAATCGAGCGTGCTTATAGCGTACCACTT 1164
BSNT_02174___ 1165 TATCCATTTATGCCAATTCTGGCAATCGCGGGCTCCTTCTTTGTGCTAGG 1214
|||||..|.|..|||||..|.||.||....||.|||||.||.||..||..
BPUM_1179___p 1165 TATCCGCTCACACCAATCGTTGCGATTATCGGTTCCTTATTCGTCTTAAT 1214
BSNT_02174___ 1215 CAGCACACTCATTACAGA-TACAATGAGCTGCGGAT----TATCCATCCT 1259
||||||..|.||.||.|| |..|| .||||| | |.|||||.||
BPUM_1179___p 1215 CAGCACCATGATCACCGACTGGAA-AAGCTG----TCTCATCTCCATGCT 1259
BSNT_02174___ 1260 CATCGGCCTTGCCGGACTGCCTGTCTATTACGGGATGAAAA--------A 1301
.|||||..||||.||.||||||.|.|||||....||||||| |
BPUM_1179___p 1260 GATCGGAATTGCTGGGCTGCCTCTTTATTATTATATGAAAAGAGCACACA 1309
BSNT_02174___ 1302 ACGAAAAGCA---AGCTGA 1317
| ||||||| .|||.|
BPUM_1179___p 1310 A--AAAAGCAGAGCGCTAA 1326
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