Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02174 and BPUM_1179

See Amino acid alignment / Visit BSNT_02174 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence dna-align/BSNT_02174___ykbA.1.24716.seq
#    -bsequence dna-align/BPUM_1179___potE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02174___ykbA-BPUM_1179___potE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02174___ykbA-BPUM_1179___potE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02174___ykbA
# 2: BPUM_1179___potE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1369
# Identity:     956/1369 (69.8%)
# Similarity:   956/1369 (69.8%)
# Gaps:          95/1369 ( 6.9%)
# Score: 3109.0
# 
#
#=======================================

BSNT_02174___      1 ATG--CATTCTGAAG-ACAAC--GGTTTGAAAAAAGAGATAGGCCTCTTG     45
                     |||  ||     ||| |||||  |..||.|||.|.||.||.|||.|.||.
BPUM_1179___p      1 ATGAACA-----AAGAACAACCAGCGTTAAAACAGGACATCGGCTTATTT     45

BSNT_02174___     46 TTTGCCCTTACTCTTGTCATCGGAACCATTATCGGTTCTGGTGTTTTTAT     95
                     ||.|||||..|||||||||||||.||.||||||||.||.||.||.|||||
BPUM_1179___p     46 TTCGCCCTATCTCTTGTCATCGGGACGATTATCGGGTCCGGCGTCTTTAT     95

BSNT_02174___     96 GAAGCCCGGCGCTGTGCTTGCTTATTCAGGCGATTCAAAAATGGCGCTTT    145
                     ||||||.|||...||.|||.|.||||||||....|||.|.||.||..|.|
BPUM_1179___p     96 GAAGCCAGGCAACGTCCTTTCCTATTCAGGAAGCTCAGATATCGCATTAT    145

BSNT_02174___    146 TCGCCTGGCTGTTAGGCGGTATTTTAACACTGGCGGGCGGTTTGACAATC    195
                     ||||.|||||||||||.||.|||.||||.||.||.|||||..|.||..|.
BPUM_1179___p    146 TCGCTTGGCTGTTAGGTGGCATTCTAACCCTTGCAGGCGGACTCACTGTT    195

BSNT_02174___    196 GCGGAAATCGGAACGCAGATTCCAAAAACCGGCGGGCTTTATACGTACCT    245
                     ||.|||||.||.||.||.||.||....||.|||||..|.|||.|.||.||
BPUM_1179___p    196 GCTGAAATTGGTACACAAATCCCTCGGACTGGCGGATTATATGCCTATCT    245

BSNT_02174___    246 TGAAGAAGTGTACGGCGAGTTTTGGGGATTTTTGTGCGGCTGGGTGCAGA    295
                     ||||||||||||.||.|||||||||||||.|||.||||||||||||||.|
BPUM_1179___p    246 TGAAGAAGTGTATGGTGAGTTTTGGGGATATTTATGCGGCTGGGTGCAAA    295

BSNT_02174___    296 TTATCATTTACGGCCCGGCGATTATTGGCGCGCTGGGTTTATATTTTGGA    345
                     |||||||||||||.||.||.||.||.||.|||||.|||.|.||||||||.
BPUM_1179___p    296 TTATCATTTACGGACCTGCCATCATCGGTGCGCTTGGTCTTTATTTTGGT    345

BSNT_02174___    346 TCTTTAATGGCGAATCT--------TTTCGGCTGGGGATCTGGACTATCA    387
                     ||.||..|.||.|||.|        ||||..||    .|.|||.|.| ||
BPUM_1179___p    346 TCATTGTTAGCCAATTTATTTTCTCTTTCTTCT----TTATGGTCGA-CA    390

BSNT_02174___    388 AAAGTCATTGGAATTATAGCAGTTCTCTTTTTATGCGTCATTAATATTAT    437
                     |.|   |||||.|||||..|.|||.|.||||||||..|.|||||.||.||
BPUM_1179___p    391 ACA---ATTGGCATTATCACTGTTTTATTTTTATGTTTGATTAACATCAT    437

BSNT_02174___    438 CGGTACAAAATACGGCGGTTTTGTCCAAACGCTGACAACGATCGGAAAAC    487
                     .||.||||||||||||||||||||.||...||||||.||.||.|||||.|
BPUM_1179___p    438 GGGAACAAAATACGGCGGTTTTGTTCAGGGGCTGACCACCATTGGAAAGC    487

BSNT_02174___    488 TGATTCCGATTGCCTGC-ATCATCATCTTTGGCCTTTGGAAAGGCGATCA    536
                     |..|.||||||||| || ||.||..|.||||||.|.||||||||..|..|
BPUM_1179___p    488 TTGTCCCGATTGCC-GCTATTATTGTGTTTGGCTTATGGAAAGGAAACGA    536

BSNT_02174___    537 GCACATCTTCACAGCAGTAAACGAAAGCATTTCTGATATGAACTTCGGGG    586
                     ..|.||.||.|..||.||.|||||.|||||..||.|.|||||||||||.|
BPUM_1179___p    537 AAATATTTTGATGGCTGTCAACGATAGCATCGCTCAAATGAACTTCGGTG    586

BSNT_02174___    587 CGGCTATTTTAGCTACGTTGTTTGCTTATGACGGATGGATTCTCCTTGCC    636
                     |.||.||..|.||||||.|.|||||.|||||.||.|||||..|.|||||.
BPUM_1179___p    587 CAGCGATCCTGGCTACGCTTTTTGCCTATGATGGCTGGATATTGCTTGCT    636

BSNT_02174___    637 GCTCTCGGCGGAGAAATGAAAAATCCCGAAAAGCTGCTGCCACGCGCTAT    686
                     ||.||.|||||.|||||||||||.||.||.||.|||||.||.||.||.||
BPUM_1179___p    637 GCACTTGGCGGTGAAATGAAAAACCCAGAGAAACTGCTTCCTCGTGCAAT    686

BSNT_02174___    687 GACGGGC-GGATTATTAATTGTAACGGCGATCTATATTTTCATTAA----    731
                     |.|.||| ||||| ||||||||.|||||...||||.|.||||||||    
BPUM_1179___p    687 GGCAGGCGGGATT-TTAATTGTCACGGCTTGCTATCTCTTCATTAATGTC    735

BSNT_02174___    732 ----TTTTGCAT-TGCTTCACATCCTGTCAGC-GAACGAAATTGTCAC-G    774
                         |||||||| ||.|.|         |||| ||.| ||||.|| || |
BPUM_1179___p    736 GCTCTTTTGCATGTGTTAC---------CAGCAGATC-AAATCGT-ACAG    774

BSNT_02174___    775 CTTGGTGAAAATGCGACAAGCACCGCGGCAACCATGCTGTTCGGGTCAAT    824
                     |||||.||||||||||||||.||.||.||.||.|||||.||.||..||||
BPUM_1179___p    775 CTTGGAGAAAATGCGACAAGTACTGCTGCGACAATGCTCTTTGGACCAAT    824

BSNT_02174___    825 TGGCGGAAAGCTGATCAGTGTAGGGATTATCGTCAGCATCTTTGGGTGCT    874
                     .||.||.|||.|.||.|||.|.||.||.|||.|.||.||||||||.||.|
BPUM_1179___p    825 CGGTGGTAAGGTCATTAGTATTGGCATCATCATTAGTATCTTTGGCTGTT    874

BSNT_02174___    875 TAAATGGAAAGGTGCTTTCTTTCCCGCGTGT--TTCATTTGCAATGGCGG    922
                     |.||.||||||||.|||||.|||||.|||||  ||  ||.||.|||||.|
BPUM_1179___p    875 TGAACGGAAAGGTTCTTTCATTCCCACGTGTGATT--TTCGCGATGGCAG    922

BSNT_02174___    923 AACGCAAACAGCTTCCATTTGCTGAAAAAC--TGTCACATGTACACCCGT    970
                     |.||.||.||..|.||.||.||  |||..|  |.||.|...|.|||||..
BPUM_1179___p    923 AGCGAAAGCAAATCCCTTTCGC--AAATGCGATTTCGCGGATTCACCCTA    970

BSNT_02174___    971 CGTTCCGCACACCATGGATTGCAATTTCTTTTCAAATTGCT-TTAGC---   1016
                     |.||....||||||||||||||..|.|.|.|.|||||| || .|.||   
BPUM_1179___p    971 CATTTAAAACACCATGGATTGCTGTATTTGTACAAATT-CTGATCGCCAT   1019

BSNT_02174___   1017 TTTGATTATGAT-GCTGATCAGCAACCCTGATAAGCTCTCAGAAATCTCC   1065
                     |.||.||||||| |    |||||||.||.||.|||||.|||||..|.||.
BPUM_1179___p   1020 TGTGTTTATGATCG----TCAGCAATCCAGAAAAGCTGTCAGAGGTTTCG   1065

BSNT_02174___   1066 ATTTTCATGATCTACATCTTTTATGTGATGGCCTTTTTTGCAGTGTTTAT   1115
                     ||||||||||||||.|||||||||||.|||||||||||.|||||.||||.
BPUM_1179___p   1066 ATTTTCATGATCTATATCTTTTATGTCATGGCCTTTTTCGCAGTCTTTAA   1115

BSNT_02174___   1116 TCTCCGCAAGC-GAGCAAAGGGAAAAAAGCGCGCCTACAGTGTTCCGCTT   1164
                     .||..|.||.| .|.|||| ||||...||||.||.||.||.||.||.|||
BPUM_1179___p   1116 ACTGAGAAAACAAAACAAA-GGAATCGAGCGTGCTTATAGCGTACCACTT   1164

BSNT_02174___   1165 TATCCATTTATGCCAATTCTGGCAATCGCGGGCTCCTTCTTTGTGCTAGG   1214
                     |||||..|.|..|||||..|.||.||....||.|||||.||.||..||..
BPUM_1179___p   1165 TATCCGCTCACACCAATCGTTGCGATTATCGGTTCCTTATTCGTCTTAAT   1214

BSNT_02174___   1215 CAGCACACTCATTACAGA-TACAATGAGCTGCGGAT----TATCCATCCT   1259
                     ||||||..|.||.||.|| |..|| .|||||    |    |.|||||.||
BPUM_1179___p   1215 CAGCACCATGATCACCGACTGGAA-AAGCTG----TCTCATCTCCATGCT   1259

BSNT_02174___   1260 CATCGGCCTTGCCGGACTGCCTGTCTATTACGGGATGAAAA--------A   1301
                     .|||||..||||.||.||||||.|.|||||....|||||||        |
BPUM_1179___p   1260 GATCGGAATTGCTGGGCTGCCTCTTTATTATTATATGAAAAGAGCACACA   1309

BSNT_02174___   1302 ACGAAAAGCA---AGCTGA   1317
                     |  |||||||   .|||.|
BPUM_1179___p   1310 A--AAAAGCAGAGCGCTAA   1326


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